AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005314

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005314 MtrunA17_Chr8g0355091 92.405 237 18 0 1 237 1 237 4.29e-164 452
MsaG005314 MtrunA17_Chr1g0206701 95.982 224 9 0 1 224 1 224 5.84e-162 447
MsaG005314 MtrunA17_Chr1g0206721 90.868 219 20 0 1 219 1 219 3.11e-150 417
MsaG005314 MtrunA17_Chr2g0292791 88.608 237 27 0 1 237 1 237 8.54e-149 414
MsaG005314 MtrunA17_Chr1g0149391 89.451 237 25 0 1 237 1 237 9.96e-147 409
MsaG005314 MtrunA17_Chr3g0099421 85.388 219 32 0 1 219 26 244 2.90e-141 395
MsaG005314 MtrunA17_Chr1g0206691 85.000 220 33 0 18 237 1 220 5.66e-139 388
MsaG005314 MtrunA17_Chr3g0099411 80.365 219 24 1 1 219 1 200 1.53e-124 352
MsaG005314 MtrunA17_Chr2g0300441 71.730 237 66 1 1 237 1 236 2.08e-121 345
MsaG005314 MtrunA17_Chr3g0089141 72.650 234 46 3 1 224 1 226 2.87e-117 334
MsaG005314 MtrunA17_Chr1g0208561 72.650 234 46 3 1 224 1 226 3.23e-116 331
MsaG005314 MtrunA17_Chr1g0206991 86.264 182 25 0 1 182 1 182 8.99e-116 328
MsaG005314 MtrunA17_Chr5g0422941 65.401 237 82 0 1 237 1 237 9.59e-115 328
MsaG005314 MtrunA17_Chr2g0325971 72.222 234 47 3 1 224 1 226 1.03e-114 327
MsaG005314 MtrunA17_Chr1g0188671 68.889 225 70 0 1 225 39 263 3.12e-114 328
MsaG005314 MtrunA17_Chr2g0317451 65.254 236 82 0 1 236 1 236 6.01e-113 323
MsaG005314 MtrunA17_Chr1g0187361 69.196 224 69 0 1 224 1 224 8.35e-113 323
MsaG005314 MtrunA17_Chr2g0317481 65.254 236 82 0 1 236 1 236 1.54e-112 322
MsaG005314 MtrunA17_Chr1g0208581 74.074 216 48 1 1 216 1 208 2.03e-111 319
MsaG005314 MtrunA17_Chr5g0422421 67.857 224 72 0 1 224 1 224 1.90e-110 317
MsaG005314 MtrunA17_Chr5g0419601 67.932 237 76 0 1 237 1 237 4.52e-110 316
MsaG005314 MtrunA17_Chr7g0238991 65.471 223 75 2 16 237 27 248 3.19e-99 289
MsaG005314 MtrunA17_Chr2g0300421 65.644 163 55 1 1 162 1 163 2.87e-68 207
MsaG005314 MtrunA17_Chr3g0085241 51.323 189 82 1 3 191 35 213 2.43e-65 202
MsaG005314 MtrunA17_Chr3g0089151 75.194 129 32 0 1 129 1 129 1.67e-64 196
MsaG005314 MtrunA17_Chr3g0119901 52.222 180 85 1 7 186 7 185 3.66e-64 198
MsaG005314 MtrunA17_Chr3g0111931 67.647 102 33 0 21 122 2 103 1.06e-45 148
MsaG005314 MtrunA17_Chr2g0333981 40.351 171 92 2 5 172 8 171 2.51e-41 139
MsaG005314 MtrunA17_Chr8g0379021 42.169 166 86 2 5 167 8 166 4.99e-41 138
MsaG005314 MtrunA17_Chr4g0018951 45.806 155 72 3 5 159 8 150 4.07e-36 125
MsaG005314 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.00e-33 114
MsaG005314 MtrunA17_Chr4g0071601 39.227 181 90 4 5 172 8 181 4.55e-32 115
MsaG005314 MtrunA17_Chr3g0111841 86.441 59 8 0 15 73 2 60 9.91e-31 108
MsaG005314 MtrunA17_Chr3g0111831 72.131 61 17 0 16 76 11 71 3.87e-25 94.7
MsaG005314 MtrunA17_Chr1g0175601 45.946 111 57 2 9 118 2 110 2.98e-24 95.1
MsaG005314 MtrunA17_Chr1g0169761 60.870 69 27 0 9 77 2 70 1.41e-23 93.6
MsaG005314 MtrunA17_Chr8g0376821 60.870 69 27 0 9 77 2 70 3.81e-23 92.4
MsaG005314 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 8.52e-23 92.0
MsaG005314 MtrunA17_Chr8g0357771 42.063 126 68 2 9 131 2 125 1.72e-22 90.5
MsaG005314 MtrunA17_Chr1g0175611 45.545 101 53 1 9 109 2 100 2.14e-22 90.1
MsaG005314 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 2.16e-22 90.5
MsaG005314 MtrunA17_Chr8g0356071 40.171 117 63 2 9 125 2 111 2.96e-21 87.0
MsaG005314 MtrunA17_Chr4g0052061 41.509 106 60 1 9 114 2 105 2.46e-20 84.3
MsaG005314 MtrunA17_Chr4g0049901 33.333 165 87 3 10 153 29 191 3.41e-19 83.2
MsaG005314 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 4.90e-19 82.4
MsaG005314 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 9.17e-19 82.4
MsaG005314 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.93e-18 79.7
MsaG005314 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 3.98e-18 79.7
MsaG005314 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.25e-17 79.0
MsaG005314 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 1.71e-17 77.8
MsaG005314 MtrunA17_Chr2g0284911 30.270 185 100 4 9 167 17 198 2.26e-17 78.6
MsaG005314 MtrunA17_Chr3g0134451 33.333 171 90 6 9 162 2 165 2.46e-17 79.3
MsaG005314 MtrunA17_Chr8g0351051 51.471 68 33 0 9 76 2 69 2.71e-17 78.6
MsaG005314 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 3.15e-17 76.3
MsaG005314 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 4.05e-17 77.8
MsaG005314 MtrunA17_Chr5g0412271 29.384 211 130 6 9 201 2 211 5.27e-17 77.0
MsaG005314 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
MsaG005314 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.08e-16 76.3
MsaG005314 MtrunA17_Chr5g0412461 28.169 213 129 6 9 201 2 210 1.16e-16 76.3
MsaG005314 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.44e-16 76.6
MsaG005314 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 1.65e-16 74.7
MsaG005314 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.71e-16 75.9
MsaG005314 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.90e-16 75.5
MsaG005314 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 5.63e-16 74.7
MsaG005314 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 7.23e-16 73.9
MsaG005314 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 9.40e-16 74.3
MsaG005314 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.05e-15 73.9
MsaG005314 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.09e-15 73.9
MsaG005314 MtrunA17_Chr7g0220121 25.822 213 144 5 9 207 2 214 1.72e-15 73.6
MsaG005314 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 1.85e-15 73.2
MsaG005314 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 2.02e-15 73.2
MsaG005314 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.17e-15 69.3
MsaG005314 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 2.71e-15 72.8
MsaG005314 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 3.18e-15 69.3
MsaG005314 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 3.99e-15 68.6
MsaG005314 MtrunA17_Chr3g0093131 33.566 143 78 4 26 159 36 170 6.06e-15 70.9
MsaG005314 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 7.26e-15 71.2
MsaG005314 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 8.81e-15 68.6
MsaG005314 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.51e-14 67.4
MsaG005314 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 1.85e-14 70.5
MsaG005314 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.68e-14 69.7
MsaG005314 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 2.73e-14 69.3
MsaG005314 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 2.78e-14 68.9
MsaG005314 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.40e-14 68.6
MsaG005314 MtrunA17_Chr7g0246381 52.632 57 27 0 9 65 2 58 5.53e-14 65.1
MsaG005314 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 7.22e-14 64.3
MsaG005314 MtrunA17_Chr3g0142191 47.619 63 33 0 9 71 2 64 1.35e-13 67.8
MsaG005314 MtrunA17_Chr4g0025531 32.278 158 95 3 5 162 5 150 1.02e-12 65.5
MsaG005314 MtrunA17_Chr4g0060841 26.738 187 115 7 9 183 2 178 2.41e-12 65.5
MsaG005314 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 6.50e-12 61.2
MsaG005314 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 1.09e-11 62.0
MsaG005314 MtrunA17_Chr2g0302091 32.075 159 80 7 7 155 36 176 2.06e-11 61.2
MsaG005314 MtrunA17_Chr1g0166611 34.513 113 64 2 20 132 17 119 5.43e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005314 AT5G60440.1 53.723 188 80 3 5 189 3 186 7.80e-61 193
MsaG005314 AT2G24840.1 49.080 163 72 4 6 162 60 217 2.70e-43 147
MsaG005314 AT1G65360.1 38.667 225 123 6 5 223 3 218 5.14e-40 137
MsaG005314 AT1G01530.1 40.000 210 103 4 4 192 2 209 1.00e-39 137
MsaG005314 AT4G36590.1 45.732 164 79 4 5 160 3 164 1.93e-38 134
MsaG005314 AT2G34440.1 45.299 117 55 2 9 121 2 113 6.62e-27 102
MsaG005314 AT3G66656.1 41.985 131 71 2 9 134 2 132 7.93e-26 99.8
MsaG005314 AT3G04100.1 31.579 152 100 2 2 149 7 158 1.04e-24 97.4
MsaG005314 AT1G72350.1 35.374 147 62 3 9 155 43 156 7.75e-23 93.2
MsaG005314 AT1G28460.1 31.429 140 93 1 5 141 4 143 1.32e-19 83.6
MsaG005314 AT4G22950.2 49.351 77 39 0 10 86 3 79 3.25e-19 82.0
MsaG005314 AT4G18960.1 28.689 244 136 8 5 226 15 242 4.14e-19 83.6
MsaG005314 AT4G09960.2 46.512 86 45 1 9 93 2 87 4.26e-19 82.8
MsaG005314 AT4G09960.1 46.512 86 45 1 9 93 2 87 4.84e-19 83.2
MsaG005314 AT4G09960.6 46.512 86 45 1 9 93 3 88 4.97e-19 83.2
MsaG005314 AT4G09960.5 46.512 86 45 1 9 93 12 97 6.87e-19 82.8
MsaG005314 AT4G09960.3 46.512 86 45 1 9 93 28 113 9.03e-19 82.8
MsaG005314 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.18e-18 82.4
MsaG005314 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.32e-18 80.1
MsaG005314 AT4G22950.3 50.000 76 38 0 10 85 3 78 1.38e-18 81.6
MsaG005314 AT4G22950.1 50.000 76 38 0 10 85 3 78 1.38e-18 81.6
MsaG005314 AT1G29962.1 29.070 172 115 4 5 169 4 175 2.68e-18 80.1
MsaG005314 AT4G09960.4 46.512 86 45 1 9 93 97 182 3.11e-18 82.4
MsaG005314 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.55e-18 80.5
MsaG005314 AT2G22540.3 51.471 68 33 0 9 76 2 69 1.90e-17 79.0
MsaG005314 AT2G22540.1 51.471 68 33 0 9 76 2 69 1.90e-17 79.0
MsaG005314 AT5G51870.2 53.731 67 31 0 10 76 3 69 2.43e-17 77.0
MsaG005314 AT5G51870.1 53.731 67 31 0 10 76 3 69 3.00e-17 77.8
MsaG005314 AT4G24540.1 36.567 134 73 4 9 132 2 133 4.26e-17 77.8
MsaG005314 AT3G57230.2 47.059 68 36 0 9 76 2 69 4.26e-17 75.9
MsaG005314 AT2G42830.1 47.368 76 40 0 1 76 9 84 5.26e-17 77.8
MsaG005314 AT5G51870.5 50.000 72 36 0 5 76 21 92 5.97e-17 76.6
MsaG005314 AT2G42830.2 47.368 76 40 0 1 76 9 84 6.13e-17 77.8
MsaG005314 AT1G22130.1 36.441 118 73 2 9 125 2 118 6.62e-17 79.0
MsaG005314 AT5G51870.4 53.731 67 31 0 10 76 3 69 6.77e-17 77.0
MsaG005314 AT3G58780.1 50.704 71 35 0 6 76 14 84 7.06e-17 77.4
MsaG005314 AT3G58780.5 50.704 71 35 0 6 76 20 90 7.19e-17 77.8
MsaG005314 AT5G51870.3 53.731 67 31 0 10 76 13 79 7.95e-17 77.0
MsaG005314 AT3G61120.1 51.471 68 33 0 9 76 2 69 8.57e-17 77.4
MsaG005314 AT5G10140.2 50.725 69 33 1 9 76 2 70 9.03e-17 75.5
MsaG005314 AT3G57390.3 50.000 68 34 0 9 76 2 69 9.53e-17 76.6
MsaG005314 AT5G62165.14 49.254 67 34 0 10 76 3 69 9.71e-17 73.9
MsaG005314 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.02e-16 76.6
MsaG005314 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.13e-16 76.6
MsaG005314 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.25e-16 75.5
MsaG005314 AT1G77980.1 38.095 105 64 1 9 112 2 106 1.30e-16 78.2
MsaG005314 AT1G77950.3 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
MsaG005314 AT1G77950.2 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
MsaG005314 AT1G77950.1 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
MsaG005314 AT1G77950.4 47.368 76 38 2 9 83 2 76 1.32e-16 77.0
MsaG005314 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.35e-16 75.5
MsaG005314 AT3G58780.4 50.704 71 35 0 6 76 14 84 1.40e-16 77.4
MsaG005314 AT5G62165.6 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
MsaG005314 AT5G62165.9 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
MsaG005314 AT5G62165.7 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
MsaG005314 AT5G62165.8 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
MsaG005314 AT5G62165.13 49.254 67 34 0 10 76 3 69 1.61e-16 74.3
MsaG005314 AT5G10140.1 50.725 69 33 1 9 76 2 70 1.69e-16 75.5
MsaG005314 AT5G10140.3 50.725 69 33 1 9 76 2 70 1.76e-16 75.1
MsaG005314 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.76e-16 76.3
MsaG005314 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.76e-16 76.3
MsaG005314 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
MsaG005314 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
MsaG005314 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.86e-16 74.3
MsaG005314 AT5G13790.2 43.011 93 44 1 9 101 2 85 2.15e-16 76.6
MsaG005314 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.23e-16 76.3
MsaG005314 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.98e-16 76.3
MsaG005314 AT4G11880.2 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
MsaG005314 AT4G11880.3 48.611 72 36 1 10 80 3 74 3.98e-16 73.9
MsaG005314 AT1G69120.2 40.659 91 51 1 9 99 2 89 4.13e-16 75.1
MsaG005314 AT2G22630.1 47.059 68 36 0 9 76 2 69 4.13e-16 75.1
MsaG005314 AT2G22630.2 47.059 68 36 0 9 76 2 69 4.13e-16 75.1
MsaG005314 AT5G51860.2 52.239 67 32 0 10 76 3 69 5.61e-16 74.3
MsaG005314 AT1G28450.1 29.371 143 95 3 5 141 4 146 5.70e-16 73.9
MsaG005314 AT5G51860.1 52.239 67 32 0 10 76 3 69 6.72e-16 74.3
MsaG005314 AT5G62165.10 49.254 67 34 0 10 76 3 69 7.11e-16 73.9
MsaG005314 AT5G62165.4 49.254 67 34 0 10 76 3 69 7.11e-16 73.9
MsaG005314 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.14e-16 74.7
MsaG005314 AT3G54340.1 29.487 156 86 3 9 162 2 135 7.36e-16 74.3
MsaG005314 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MsaG005314 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MsaG005314 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MsaG005314 AT4G11880.4 48.611 72 36 1 10 80 3 74 9.66e-16 73.9
MsaG005314 AT4G11880.1 48.611 72 36 1 10 80 3 74 9.66e-16 73.9
MsaG005314 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.89e-16 74.7
MsaG005314 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.06e-15 74.3
MsaG005314 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.35e-15 73.9
MsaG005314 AT5G23260.1 44.330 97 46 3 2 90 9 105 2.04e-15 73.9
MsaG005314 AT5G23260.4 44.330 97 46 3 2 90 9 105 2.17e-15 73.9
MsaG005314 AT5G20240.2 47.143 70 35 1 9 76 2 71 2.81e-15 71.2
MsaG005314 AT5G15800.1 49.275 69 34 1 9 76 2 70 2.91e-15 73.2
MsaG005314 AT5G23260.3 45.455 88 42 2 9 90 2 89 3.64e-15 72.8
MsaG005314 AT5G23260.2 45.455 88 42 2 9 90 2 89 4.11e-15 72.8
MsaG005314 AT2G22540.2 50.000 68 29 1 9 76 2 64 4.22e-15 72.4
MsaG005314 AT5G15800.2 49.275 69 34 1 9 76 2 70 4.91e-15 72.8
MsaG005314 AT5G20240.1 47.143 70 35 1 9 76 2 71 5.32e-15 71.6
MsaG005314 AT1G17310.1 51.899 79 36 1 8 86 47 123 6.76e-15 71.6
MsaG005314 AT5G65050.1 30.412 194 111 7 9 193 2 180 7.00e-15 70.9
MsaG005314 AT2G14210.1 46.377 69 36 1 9 76 2 70 8.17e-15 71.6
MsaG005314 AT1G17310.2 51.899 79 36 1 8 86 58 134 8.53e-15 71.6
MsaG005314 AT5G65050.5 27.979 193 120 8 9 193 2 183 9.10e-15 70.5
MsaG005314 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.11e-14 71.2
MsaG005314 AT3G58780.2 53.333 60 28 0 6 65 14 73 1.90e-14 70.9
MsaG005314 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.03e-14 70.1
MsaG005314 AT5G65050.2 46.377 69 36 1 9 76 2 70 2.28e-14 69.3
MsaG005314 AT1G24260.2 28.226 248 142 9 9 234 2 235 2.32e-14 70.9
MsaG005314 AT3G58780.3 53.333 60 28 0 6 65 14 73 2.50e-14 70.9
MsaG005314 AT1G24260.3 29.114 237 140 8 9 234 2 221 3.15e-14 70.1
MsaG005314 AT2G03710.3 53.571 56 26 0 9 64 2 57 3.94e-14 68.9
MsaG005314 AT5G65050.3 46.377 69 36 1 9 76 2 70 4.27e-14 68.9
MsaG005314 AT3G02310.1 47.826 69 35 1 9 76 2 70 4.99e-14 69.7
MsaG005314 AT2G03710.2 47.143 70 35 2 9 76 2 71 7.83e-14 69.3
MsaG005314 AT5G65060.3 46.377 69 36 1 9 76 2 70 8.21e-14 68.2
MsaG005314 AT2G03710.1 47.143 70 35 2 9 76 2 71 8.41e-14 69.3
MsaG005314 AT5G65060.2 46.377 69 36 1 9 76 2 70 8.59e-14 67.8
MsaG005314 AT1G47760.1 31.788 151 82 5 9 156 2 134 8.96e-14 67.8
MsaG005314 AT1G24260.1 53.571 56 26 0 9 64 2 57 1.00e-13 68.9
MsaG005314 AT5G65060.1 46.377 69 36 1 9 76 2 70 1.09e-13 67.8
MsaG005314 AT1G71692.1 44.286 70 38 1 9 77 2 71 1.33e-13 67.8
MsaG005314 AT5G65070.4 42.029 69 39 1 9 76 2 70 3.65e-13 65.5
MsaG005314 AT5G65070.1 42.029 69 39 1 9 76 2 70 6.14e-13 65.9
MsaG005314 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.15e-12 65.5
MsaG005314 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.27e-12 65.5
MsaG005314 AT1G18750.4 25.806 186 119 6 9 177 2 185 4.53e-12 65.1
MsaG005314 AT1G18750.1 25.806 186 119 6 9 177 2 185 5.33e-12 65.1
MsaG005314 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.86e-12 63.5
MsaG005314 AT1G69540.1 32.727 110 66 3 9 117 2 104 1.76e-11 63.5
MsaG005314 AT4G37435.1 40.278 72 42 1 9 79 2 73 1.90e-11 61.6
MsaG005314 AT1G69540.2 32.727 110 66 3 9 117 2 104 1.98e-11 63.2
MsaG005314 AT1G18750.3 37.333 75 45 1 9 81 2 76 3.98e-11 62.4
MsaG005314 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.27e-11 58.9
MsaG005314 AT5G65080.3 42.029 69 39 1 9 76 9 77 5.82e-11 60.1
MsaG005314 AT2G03060.3 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
MsaG005314 AT2G03060.7 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
MsaG005314 AT2G03060.1 39.286 84 48 3 9 90 2 84 6.97e-11 61.6
MsaG005314 AT2G03060.2 39.286 84 48 3 9 90 2 84 7.04e-11 61.6
MsaG005314 AT5G65080.2 43.548 62 35 0 1 62 1 62 8.38e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1:+80079702 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1:-80079888 MsaT005314.1:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 1:-80079967 MsaT005314.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1:+80080045 None:intergenic
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1:-80079651 MsaT005314.1:CDS
AAGGAGACTAAGAAACTTGT+TGG 0.377140 1:-80079825 MsaT005314.1:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1:+80079590 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1:-80079637 MsaT005314.1:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1:-80079878 MsaT005314.1:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 1:+80079712 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1:-80079887 MsaT005314.1:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1:-80079877 MsaT005314.1:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 1:+80079961 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1:-80079908 MsaT005314.1:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1:-80079636 MsaT005314.1:CDS
TGCTGATAGACTTGTAATCC+AGG 0.479655 1:-80079796 MsaT005314.1:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 1:+80079876 None:intergenic
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1:+80080001 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 1:+80079693 None:intergenic
GACTCAGATCAACCAGCTAC+TGG 0.508380 1:-80079973 MsaT005314.1:CDS
GTCTATGACCGTATCAACAT+TGG 0.509296 1:+80080091 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 1:+80080175 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1:+80079875 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1:+80079654 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1:+80080092 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1:-80080099 MsaT005314.1:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 1:+80080009 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1:-80080211 MsaT005314.1:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1:-80080298 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1:+80080069 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 1:+80079902 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1:-80080212 MsaT005314.1:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1:+80080122 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1:-80079928 MsaT005314.1:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 1:+80080096 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1:+80079778 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1:+80080198 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 1:+80079717 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 1:-80079635 MsaT005314.1:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 1:-80080173 MsaT005314.1:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 1:-80080302 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1:+80079593 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 1:-80080036 MsaT005314.1:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1:-80080056 MsaT005314.1:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1:+80080031 None:intergenic
GCTGATAGACTTGTAATCCA+GGG 0.644111 1:-80079795 MsaT005314.1:CDS
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1:+80079696 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1:+80079642 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1:+80079594 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1:-80079633 MsaT005314.1:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1:-80080287 MsaT005314.1:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1:-80079634 MsaT005314.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 80079599 80080312 80079599 ID=MsaG005314
Chr1 mRNA 80079599 80080312 80079599 ID=MsaT005314.1;Parent=MsaG005314
Chr1 exon 80079599 80080312 80079599 ID=MsaT005314.1.exon1;Parent=MsaT005314.1
Chr1 CDS 80079599 80080312 80079599 ID=cds.MsaT005314.1;Parent=MsaT005314.1
Gene Sequence

>MsaT005314.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGAAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGACTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>MsaT005314.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALKETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*