AlfalfaGEDB | MsaG005314

M. sativa ssp. caerulea / MsaG005314

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005314	XP_003628107.1	92.405	237	18	0	1	237	1	237	4.66e-160	452

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005314	sp\|Q9FKK2\|AGL62_ARATH	53.723	188	80	3	5	189	3	186	7.68e-60	193

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005314	tr\|G7L6X5\|G7L6X5_MEDTR	92.405	237	18	0	1	237	1	237	2.23e-160	452

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005314	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG004921	MsaG005314	0.802199	1.055102e-48	1.499348e-46
MsaG020137	MsaG005314	0.816414	9.717703e-52	1.947133e-49
MsaG021296	MsaG005314	0.816429	9.641594e-52	1.932614e-49
MsaG027046	MsaG005314	0.809727	2.802169e-50	4.753767e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005314	MtrunA17_Chr8g0355091	92.405	237	18	0	1	237	1	237	4.29e-164	452
MsaG005314	MtrunA17_Chr1g0206701	95.982	224	9	0	1	224	1	224	5.84e-162	447
MsaG005314	MtrunA17_Chr1g0206721	90.868	219	20	0	1	219	1	219	3.11e-150	417
MsaG005314	MtrunA17_Chr2g0292791	88.608	237	27	0	1	237	1	237	8.54e-149	414
MsaG005314	MtrunA17_Chr1g0149391	89.451	237	25	0	1	237	1	237	9.96e-147	409
MsaG005314	MtrunA17_Chr3g0099421	85.388	219	32	0	1	219	26	244	2.90e-141	395
MsaG005314	MtrunA17_Chr1g0206691	85.000	220	33	0	18	237	1	220	5.66e-139	388
MsaG005314	MtrunA17_Chr3g0099411	80.365	219	24	1	1	219	1	200	1.53e-124	352
MsaG005314	MtrunA17_Chr2g0300441	71.730	237	66	1	1	237	1	236	2.08e-121	345
MsaG005314	MtrunA17_Chr3g0089141	72.650	234	46	3	1	224	1	226	2.87e-117	334

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005314	AT5G60440.1	53.723	188	80	3	5	189	3	186	7.80e-61	193
MsaG005314	AT2G24840.1	49.080	163	72	4	6	162	60	217	2.70e-43	147
MsaG005314	AT1G65360.1	38.667	225	123	6	5	223	3	218	5.14e-40	137
MsaG005314	AT1G01530.1	40.000	210	103	4	4	192	2	209	1.00e-39	137
MsaG005314	AT4G36590.1	45.732	164	79	4	5	160	3	164	1.93e-38	134
MsaG005314	AT2G34440.1	45.299	117	55	2	9	121	2	113	6.62e-27	102
MsaG005314	AT3G66656.1	41.985	131	71	2	9	134	2	132	7.93e-26	99.8
MsaG005314	AT3G04100.1	31.579	152	100	2	2	149	7	158	1.04e-24	97.4
MsaG005314	AT1G72350.1	35.374	147	62	3	9	155	43	156	7.75e-23	93.2
MsaG005314	AT1G28460.1	31.429	140	93	1	5	141	4	143	1.32e-19	83.6

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Find 52 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGTGAGGTTGCAACAT+AGG	0.539918	1:+80079654	None:intergenic
AAGGAGACTAAGAAACTTGT+TGG	0.377140	1:-80079825	MsaT005314.1:CDS
AATGAAAATACCTTCTCCCC+AGG	0.587583	1:+80080122	None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG	0.571963	1:-80080212	MsaT005314.1:CDS
AGAGCTGAGCAACTTGCGCA+AGG	0.589828	1:-80079928	MsaT005314.1:CDS
AGCCCACCAAAACTGACTCT+CGG	0.565176	1:+80079902	None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG	0.458130	1:-80079908	MsaT005314.1:CDS
AGGTTTGAGTAGGAGCACCC+TGG	0.605264	1:+80079778	None:intergenic
AGTATTGAGCTCGCGCACAT+TGG	0.504609	1:+80080001	None:intergenic
AGTGAGCTTTGCACTCTCTG+CGG	0.622154	1:-80080173	MsaT005314.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80079599	80080312	80079599	ID=MsaG005314
Chr1	mRNA	80079599	80080312	80079599	ID=MsaT005314.1;Parent=MsaG005314
Chr1	exon	80079599	80080312	80079599	ID=MsaT005314.1.exon1;Parent=MsaT005314.1
Chr1	CDS	80079599	80080312	80079599	ID=cds.MsaT005314.1;Parent=MsaT005314.1

Gene Sequence

>MsaT005314.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGAAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGACTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA

Protein sequence

>MsaT005314.1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALKETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF*