AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005316

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005316 MtrunA17_Chr8g0355091 90.717 237 22 0 1 237 1 237 7.20e-161 444
MsaG005316 MtrunA17_Chr1g0206701 91.139 237 21 0 1 237 1 237 2.88e-155 430
MsaG005316 MtrunA17_Chr1g0206721 92.237 219 17 0 1 219 1 219 2.34e-152 423
MsaG005316 MtrunA17_Chr2g0292791 91.561 237 20 0 1 237 1 237 6.56e-152 422
MsaG005316 MtrunA17_Chr3g0099421 87.671 219 27 0 1 219 26 244 1.75e-144 404
MsaG005316 MtrunA17_Chr1g0149391 88.608 237 27 0 1 237 1 237 3.79e-144 402
MsaG005316 MtrunA17_Chr1g0206691 82.727 220 38 0 18 237 1 220 5.23e-135 378
MsaG005316 MtrunA17_Chr3g0099411 81.279 219 22 1 1 219 1 200 1.88e-126 357
MsaG005316 MtrunA17_Chr2g0300441 72.152 237 65 1 1 237 1 236 1.97e-121 345
MsaG005316 MtrunA17_Chr5g0422941 68.354 237 75 0 1 237 1 237 4.06e-121 344
MsaG005316 MtrunA17_Chr3g0089141 74.043 235 43 3 1 225 1 227 6.96e-121 343
MsaG005316 MtrunA17_Chr1g0208561 74.468 235 42 3 1 225 1 227 1.60e-120 342
MsaG005316 MtrunA17_Chr1g0188671 72.444 225 62 0 1 225 39 263 1.78e-120 343
MsaG005316 MtrunA17_Chr2g0317451 67.373 236 77 0 1 236 1 236 7.88e-119 338
MsaG005316 MtrunA17_Chr1g0187361 72.000 225 63 0 1 225 1 225 1.28e-118 337
MsaG005316 MtrunA17_Chr2g0325971 73.617 235 44 3 1 225 1 227 2.12e-118 337
MsaG005316 MtrunA17_Chr1g0206991 88.462 182 21 0 1 182 1 182 2.19e-118 335
MsaG005316 MtrunA17_Chr2g0317481 67.373 236 77 0 1 236 1 236 2.72e-118 337
MsaG005316 MtrunA17_Chr5g0419601 70.886 237 69 0 1 237 1 237 7.81e-116 330
MsaG005316 MtrunA17_Chr1g0208581 71.489 235 49 3 1 225 1 227 1.12e-114 327
MsaG005316 MtrunA17_Chr5g0422421 69.778 225 68 0 1 225 1 225 3.41e-114 326
MsaG005316 MtrunA17_Chr7g0238991 64.831 236 81 2 3 237 14 248 7.92e-103 298
MsaG005316 MtrunA17_Chr2g0300421 76.119 134 32 0 1 134 1 134 1.64e-68 208
MsaG005316 MtrunA17_Chr3g0085241 52.381 189 80 1 3 191 35 213 5.47e-67 207
MsaG005316 MtrunA17_Chr3g0089151 75.000 132 33 0 1 132 1 132 1.30e-65 199
MsaG005316 MtrunA17_Chr3g0119901 56.024 166 73 0 7 172 7 172 3.76e-65 201
MsaG005316 MtrunA17_Chr3g0111931 69.608 102 31 0 21 122 2 103 3.95e-47 151
MsaG005316 MtrunA17_Chr2g0333981 39.766 171 93 2 5 172 8 171 5.89e-41 138
MsaG005316 MtrunA17_Chr8g0379021 41.566 166 87 2 5 167 8 166 1.03e-40 137
MsaG005316 MtrunA17_Chr4g0018951 44.516 155 74 3 5 159 8 150 1.05e-34 122
MsaG005316 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 2.39e-34 118
MsaG005316 MtrunA17_Chr4g0071601 37.500 184 95 4 5 175 8 184 3.66e-31 113
MsaG005316 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 1.39e-29 105
MsaG005316 MtrunA17_Chr1g0175601 47.525 101 51 1 9 109 2 100 1.32e-25 99.0
MsaG005316 MtrunA17_Chr1g0169761 62.319 69 26 0 9 77 2 70 9.78e-25 96.7
MsaG005316 MtrunA17_Chr8g0376821 62.319 69 26 0 9 77 2 70 2.42e-24 95.5
MsaG005316 MtrunA17_Chr3g0111831 68.852 61 19 0 16 76 11 71 5.19e-24 91.7
MsaG005316 MtrunA17_Chr4g0074101 40.517 116 54 2 9 109 2 117 5.40e-24 95.1
MsaG005316 MtrunA17_Chr1g0175611 46.535 101 52 1 9 109 2 100 1.06e-23 93.6
MsaG005316 MtrunA17_Chr1g0180591 48.544 103 51 2 9 109 2 104 1.21e-23 93.6
MsaG005316 MtrunA17_Chr8g0357771 42.857 126 67 2 9 131 2 125 1.40e-23 93.6
MsaG005316 MtrunA17_Chr8g0356071 40.152 132 67 3 9 135 2 126 1.01e-22 90.9
MsaG005316 MtrunA17_Chr4g0052061 40.708 113 64 2 9 120 2 112 1.13e-20 85.1
MsaG005316 MtrunA17_Chr4g0049901 33.939 165 86 3 10 153 29 191 2.41e-19 83.6
MsaG005316 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 3.02e-19 83.2
MsaG005316 MtrunA17_Chr3g0097101 42.453 106 51 1 3 108 11 106 4.52e-19 83.2
MsaG005316 MtrunA17_Chr4g0052081 41.509 106 61 1 9 113 2 107 1.37e-18 80.1
MsaG005316 MtrunA17_Chr4g0057151 50.685 73 36 0 10 82 3 75 2.26e-18 80.5
MsaG005316 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 4.41e-18 79.0
MsaG005316 MtrunA17_Chr8g0351051 33.929 168 95 5 9 167 2 162 8.08e-18 79.7
MsaG005316 MtrunA17_Chr5g0427401 51.471 68 33 0 9 76 2 69 1.37e-17 78.6
MsaG005316 MtrunA17_Chr3g0093131 35.664 143 75 4 26 159 36 170 1.44e-17 77.8
MsaG005316 MtrunA17_Chr2g0284911 41.346 104 60 1 9 112 17 119 2.04e-17 79.0
MsaG005316 MtrunA17_Chr8g0380021 51.471 68 33 0 9 76 18 85 2.34e-17 78.6
MsaG005316 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.45e-17 76.6
MsaG005316 MtrunA17_Chr6g0474371 49.275 69 34 1 9 76 2 70 2.87e-17 77.0
MsaG005316 MtrunA17_Chr3g0134451 42.308 104 57 3 9 111 2 103 4.51e-17 78.6
MsaG005316 MtrunA17_Chr5g0412461 29.108 213 127 6 9 201 2 210 6.36e-17 77.0
MsaG005316 MtrunA17_Chr5g0412271 30.047 213 126 8 9 201 2 211 1.02e-16 76.3
MsaG005316 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 1.15e-16 76.3
MsaG005316 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.20e-16 76.3
MsaG005316 MtrunA17_Chr8g0351031 47.436 78 41 0 10 87 3 80 1.25e-16 76.3
MsaG005316 MtrunA17_Chr7g0246431 38.182 110 66 1 10 119 3 110 1.26e-16 75.9
MsaG005316 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 2.66e-16 75.9
MsaG005316 MtrunA17_Chr4g0020221 42.683 82 47 0 9 90 2 83 5.04e-16 75.1
MsaG005316 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 9.42e-16 73.6
MsaG005316 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.04e-15 73.9
MsaG005316 MtrunA17_Chr7g0220111 49.275 69 34 1 9 76 2 70 1.12e-15 73.9
MsaG005316 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.37e-15 73.6
MsaG005316 MtrunA17_Chr8g0366231 40.964 83 46 1 9 91 2 81 1.38e-15 73.6
MsaG005316 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 2.35e-15 68.9
MsaG005316 MtrunA17_Chr5g0420081 45.070 71 36 1 9 79 2 69 3.74e-15 72.4
MsaG005316 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 4.00e-15 68.9
MsaG005316 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 4.58e-15 72.0
MsaG005316 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 5.74e-15 68.2
MsaG005316 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 8.72e-15 70.9
MsaG005316 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.23e-14 68.2
MsaG005316 MtrunA17_Chr7g0246381 48.485 66 29 1 9 69 2 67 1.43e-14 66.6
MsaG005316 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 1.75e-14 67.0
MsaG005316 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 2.03e-14 70.5
MsaG005316 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 2.22e-14 70.1
MsaG005316 MtrunA17_Chr3g0122251 41.237 97 54 1 9 105 2 95 2.24e-14 70.1
MsaG005316 MtrunA17_Chr5g0427921 49.123 57 29 0 9 65 2 58 3.17e-14 65.5
MsaG005316 MtrunA17_Chr4g0061671 50.877 57 28 0 9 65 2 58 3.89e-14 68.6
MsaG005316 MtrunA17_Chr3g0125241 44.286 70 37 1 9 76 27 96 4.05e-14 68.9
MsaG005316 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 4.49e-14 68.2
MsaG005316 MtrunA17_Chr3g0142191 28.814 177 98 5 9 181 2 154 1.10e-13 68.2
MsaG005316 MtrunA17_Chr4g0060841 28.977 176 103 9 9 172 2 167 4.77e-12 64.7
MsaG005316 MtrunA17_Chr2g0302091 31.288 163 84 7 7 159 36 180 6.55e-12 62.8
MsaG005316 MtrunA17_Chr4g0025531 29.703 202 113 6 5 198 5 185 7.33e-12 63.2
MsaG005316 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 1.37e-11 60.1
MsaG005316 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 2.67e-11 60.8
MsaG005316 MtrunA17_Chr1g0166611 36.190 105 58 2 20 123 17 113 7.21e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005316 AT5G60440.1 56.452 186 74 3 5 187 3 184 1.55e-64 202
MsaG005316 AT2G24840.1 50.000 164 71 4 6 163 60 218 9.89e-46 153
MsaG005316 AT1G01530.1 43.750 192 96 4 4 192 2 184 5.55e-43 146
MsaG005316 AT1G65360.1 40.529 227 120 6 5 225 3 220 9.48e-43 144
MsaG005316 AT4G36590.1 46.951 164 77 4 5 160 3 164 5.17e-40 138
MsaG005316 AT2G34440.1 45.299 117 55 2 9 121 2 113 8.74e-27 102
MsaG005316 AT3G04100.1 32.716 162 105 3 2 159 7 168 5.88e-26 100
MsaG005316 AT3G66656.1 43.697 119 63 1 9 123 2 120 1.25e-25 99.4
MsaG005316 AT1G72350.1 36.184 152 64 4 9 160 43 161 3.54e-23 94.0
MsaG005316 AT1G28460.1 29.586 169 115 2 5 169 4 172 2.52e-20 85.5
MsaG005316 AT4G22950.2 49.351 77 39 0 10 86 3 79 2.16e-19 82.8
MsaG005316 AT4G09960.2 46.512 86 45 1 9 93 2 87 2.46e-19 83.6
MsaG005316 AT4G09960.1 46.512 86 45 1 9 93 2 87 2.77e-19 83.6
MsaG005316 AT4G09960.6 46.512 86 45 1 9 93 3 88 3.10e-19 83.6
MsaG005316 AT1G29962.1 29.651 172 114 4 5 169 4 175 3.71e-19 82.4
MsaG005316 AT4G09960.5 46.512 86 45 1 9 93 12 97 3.98e-19 83.6
MsaG005316 AT4G22950.3 40.909 110 62 1 10 119 3 109 5.16e-19 82.8
MsaG005316 AT4G22950.1 40.909 110 62 1 10 119 3 109 5.16e-19 82.8
MsaG005316 AT4G09960.3 46.512 86 45 1 9 93 28 113 5.76e-19 83.6
MsaG005316 AT4G18960.1 31.933 238 136 10 5 226 15 242 6.70e-19 83.2
MsaG005316 AT2G45660.2 52.941 68 32 0 10 77 3 70 1.08e-18 80.5
MsaG005316 AT2G45650.1 52.941 68 32 0 9 76 2 69 1.33e-18 82.4
MsaG005316 AT4G09960.4 46.512 86 45 1 9 93 97 182 1.60e-18 83.2
MsaG005316 AT2G45660.1 52.941 68 32 0 10 77 3 70 3.20e-18 80.5
MsaG005316 AT2G22540.3 39.130 138 64 5 9 132 2 133 1.88e-17 79.0
MsaG005316 AT2G22540.1 39.130 138 64 5 9 132 2 133 1.88e-17 79.0
MsaG005316 AT3G57230.2 47.059 68 36 0 9 76 2 69 3.46e-17 76.3
MsaG005316 AT5G51870.2 53.731 67 31 0 10 76 3 69 3.57e-17 76.6
MsaG005316 AT2G42830.1 47.368 76 40 0 1 76 9 84 3.72e-17 78.2
MsaG005316 AT2G42830.2 47.368 76 40 0 1 76 9 84 3.80e-17 78.2
MsaG005316 AT5G51870.1 53.731 67 31 0 10 76 3 69 4.22e-17 77.4
MsaG005316 AT3G58780.1 50.704 71 35 0 6 76 14 84 4.29e-17 78.2
MsaG005316 AT3G58780.5 50.704 71 35 0 6 76 20 90 4.37e-17 78.2
MsaG005316 AT3G61120.1 51.471 68 33 0 9 76 2 69 5.48e-17 77.8
MsaG005316 AT5G51870.5 50.000 72 36 0 5 76 21 92 7.81e-17 76.3
MsaG005316 AT1G17310.1 36.905 168 65 5 8 170 47 178 8.03e-17 76.6
MsaG005316 AT5G51870.4 53.731 67 31 0 10 76 3 69 8.06e-17 77.0
MsaG005316 AT4G24540.1 51.471 68 33 0 9 76 2 69 8.12e-17 77.0
MsaG005316 AT3G58780.4 50.704 71 35 0 6 76 14 84 8.41e-17 77.8
MsaG005316 AT1G17310.2 36.905 168 65 5 8 170 58 189 9.89e-17 76.6
MsaG005316 AT5G51870.3 53.731 67 31 0 10 76 13 79 9.95e-17 76.6
MsaG005316 AT3G57390.3 50.000 68 34 0 9 76 2 69 1.13e-16 76.6
MsaG005316 AT5G10140.2 50.725 69 33 1 9 76 2 70 1.19e-16 75.1
MsaG005316 AT5G62165.14 49.254 67 34 0 10 76 3 69 1.49e-16 73.2
MsaG005316 AT1G22130.1 37.143 105 65 1 9 112 2 106 1.50e-16 77.8
MsaG005316 AT4G37940.4 48.529 68 35 0 9 76 2 69 1.51e-16 75.9
MsaG005316 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.60e-16 76.3
MsaG005316 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.64e-16 75.1
MsaG005316 AT5G62165.17 49.254 67 34 0 10 76 3 69 1.71e-16 74.7
MsaG005316 AT5G62165.12 49.254 67 34 0 10 76 3 69 1.71e-16 74.7
MsaG005316 AT5G62165.11 49.254 67 34 0 10 76 3 69 1.71e-16 74.7
MsaG005316 AT5G13790.2 43.011 93 44 1 9 101 2 85 1.95e-16 76.6
MsaG005316 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.97e-16 76.3
MsaG005316 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.97e-16 76.3
MsaG005316 AT5G10140.4 50.725 69 33 1 9 76 2 70 1.97e-16 75.1
MsaG005316 AT5G62165.6 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
MsaG005316 AT5G62165.9 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
MsaG005316 AT5G62165.7 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
MsaG005316 AT5G62165.8 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
MsaG005316 AT5G62165.13 49.254 67 34 0 10 76 3 69 2.07e-16 74.3
MsaG005316 AT1G77980.1 38.095 105 64 1 9 112 2 106 2.09e-16 77.4
MsaG005316 AT5G10140.1 50.725 69 33 1 9 76 2 70 2.27e-16 75.1
MsaG005316 AT5G10140.3 50.725 69 33 1 9 76 2 70 2.28e-16 75.1
MsaG005316 AT1G28450.1 27.950 161 110 3 5 159 4 164 2.50e-16 74.7
MsaG005316 AT5G13790.1 51.471 68 33 0 9 76 2 69 2.67e-16 76.3
MsaG005316 AT3G57390.1 50.000 68 34 0 9 76 2 69 2.67e-16 76.3
MsaG005316 AT4G11880.2 48.611 72 36 1 10 80 3 74 4.11e-16 73.9
MsaG005316 AT4G11880.3 48.611 72 36 1 10 80 3 74 4.11e-16 73.9
MsaG005316 AT5G51860.2 52.239 67 32 0 10 76 3 69 4.81e-16 74.3
MsaG005316 AT1G69120.2 43.373 83 44 1 9 91 2 81 5.01e-16 75.1
MsaG005316 AT5G62165.10 49.254 67 34 0 10 76 3 69 6.83e-16 73.9
MsaG005316 AT5G62165.4 49.254 67 34 0 10 76 3 69 6.83e-16 73.9
MsaG005316 AT5G62165.3 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
MsaG005316 AT5G62165.1 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
MsaG005316 AT5G62165.2 49.254 67 34 0 10 76 3 69 7.02e-16 73.9
MsaG005316 AT1G77950.3 46.053 76 39 2 9 83 2 76 7.14e-16 74.7
MsaG005316 AT1G77950.2 46.053 76 39 2 9 83 2 76 7.14e-16 74.7
MsaG005316 AT1G77950.1 46.053 76 39 2 9 83 2 76 7.14e-16 74.7
MsaG005316 AT1G77950.4 46.053 76 39 2 9 83 2 76 7.14e-16 74.7
MsaG005316 AT5G51860.1 52.239 67 32 0 10 76 3 69 7.44e-16 73.9
MsaG005316 AT5G60910.1 49.296 71 33 1 9 79 2 69 7.74e-16 74.7
MsaG005316 AT2G22630.1 47.059 68 36 0 9 76 2 69 7.93e-16 74.3
MsaG005316 AT2G22630.2 47.059 68 36 0 9 76 2 69 7.93e-16 74.3
MsaG005316 AT4G11880.4 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MsaG005316 AT4G11880.1 48.611 72 36 1 10 80 3 74 8.55e-16 73.9
MsaG005316 AT1G69120.1 40.659 91 51 1 9 99 2 89 9.80e-16 74.7
MsaG005316 AT1G24260.3 30.000 240 134 9 9 234 2 221 1.04e-15 74.3
MsaG005316 AT1G26310.1 47.826 69 35 1 9 76 2 70 1.29e-15 74.3
MsaG005316 AT3G54340.1 47.143 70 35 1 9 76 2 71 1.56e-15 73.6
MsaG005316 AT3G30260.1 46.377 69 36 1 9 76 2 70 1.70e-15 73.9
MsaG005316 AT5G15800.1 49.275 69 34 1 9 76 2 70 3.03e-15 73.2
MsaG005316 AT1G24260.2 28.685 251 137 9 9 234 2 235 4.14e-15 72.8
MsaG005316 AT5G20240.2 47.143 70 35 1 9 76 2 71 5.06e-15 70.5
MsaG005316 AT5G15800.2 49.275 69 34 1 9 76 2 70 5.21e-15 72.8
MsaG005316 AT2G14210.1 46.377 69 36 1 9 76 2 70 5.57e-15 72.0
MsaG005316 AT5G20240.1 47.143 70 35 1 9 76 2 71 6.86e-15 71.2
MsaG005316 AT2G14210.2 46.377 69 36 1 9 76 2 70 7.13e-15 72.0
MsaG005316 AT2G22540.2 38.406 138 60 6 9 132 2 128 7.88e-15 71.6
MsaG005316 AT5G23260.4 43.299 97 47 3 2 90 9 105 1.51e-14 71.6
MsaG005316 AT5G23260.1 43.299 97 47 3 2 90 9 105 1.61e-14 71.2
MsaG005316 AT5G65050.2 46.377 69 36 1 9 76 2 70 1.70e-14 69.7
MsaG005316 AT3G58780.2 52.459 61 29 0 6 66 14 74 1.88e-14 70.9
MsaG005316 AT3G02310.2 47.826 69 35 1 9 76 2 70 1.93e-14 70.1
MsaG005316 AT1G24260.1 29.084 251 135 11 9 234 2 234 2.27e-14 70.9
MsaG005316 AT3G58780.3 52.459 61 29 0 6 66 14 74 2.68e-14 70.9
MsaG005316 AT5G65050.5 46.377 69 36 1 9 76 2 70 2.89e-14 69.3
MsaG005316 AT5G23260.3 44.318 88 43 2 9 90 2 89 3.01e-14 70.1
MsaG005316 AT5G23260.2 44.318 88 43 2 9 90 2 89 3.01e-14 70.5
MsaG005316 AT5G65050.3 46.377 69 36 1 9 76 2 70 3.05e-14 69.3
MsaG005316 AT5G65050.1 46.377 69 36 1 9 76 2 70 3.31e-14 68.9
MsaG005316 AT2G03710.3 53.571 56 26 0 9 64 2 57 4.83e-14 68.6
MsaG005316 AT3G02310.1 47.826 69 35 1 9 76 2 70 5.14e-14 69.7
MsaG005316 AT5G65060.3 46.377 69 36 1 9 76 2 70 5.19e-14 68.6
MsaG005316 AT5G65060.2 46.377 69 36 1 9 76 2 70 5.43e-14 68.6
MsaG005316 AT5G65060.1 46.377 69 36 1 9 76 2 70 6.27e-14 68.6
MsaG005316 AT1G47760.1 34.483 116 61 3 9 123 2 103 6.60e-14 68.2
MsaG005316 AT2G03710.1 45.714 70 36 1 9 76 2 71 1.10e-13 68.9
MsaG005316 AT2G03710.2 45.714 70 36 1 9 76 2 71 1.14e-13 68.9
MsaG005316 AT1G71692.1 44.286 70 38 1 9 77 2 71 2.29e-13 67.4
MsaG005316 AT5G65070.4 42.029 69 39 1 9 76 2 70 2.88e-13 65.5
MsaG005316 AT5G65070.1 42.029 69 39 1 9 76 2 70 5.78e-13 65.9
MsaG005316 AT5G65070.2 42.029 69 39 1 9 76 2 70 1.06e-12 65.9
MsaG005316 AT5G65070.5 42.029 69 39 1 9 76 2 70 1.15e-12 65.5
MsaG005316 AT1G18750.4 27.053 207 129 7 9 195 2 206 1.60e-12 66.6
MsaG005316 AT1G18750.1 27.053 207 129 7 9 195 2 206 1.72e-12 66.6
MsaG005316 AT1G18750.3 38.667 75 44 1 9 81 2 76 5.39e-12 65.1
MsaG005316 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.52e-12 63.9
MsaG005316 AT2G03060.3 28.655 171 105 7 9 164 2 170 6.14e-12 64.7
MsaG005316 AT2G03060.7 28.655 171 105 7 9 164 2 170 6.14e-12 64.7
MsaG005316 AT2G03060.1 28.655 171 105 7 9 164 2 170 6.14e-12 64.7
MsaG005316 AT2G03060.2 28.655 171 105 7 9 164 2 170 6.83e-12 64.7
MsaG005316 AT1G69540.1 33.636 110 65 3 9 117 2 104 1.27e-11 63.9
MsaG005316 AT1G46408.1 36.134 119 67 4 10 119 5 123 1.48e-11 63.2
MsaG005316 AT1G69540.2 33.636 110 65 3 9 117 2 104 1.55e-11 63.5
MsaG005316 AT5G65080.3 42.667 75 40 2 5 76 3 77 2.75e-11 61.2
MsaG005316 AT4G37435.1 40.278 72 42 1 9 79 2 73 3.14e-11 60.8
MsaG005316 AT2G26320.1 40.000 70 40 1 9 76 18 87 4.63e-11 58.5
MsaG005316 AT5G65080.2 43.548 62 35 0 1 62 1 62 7.15e-11 60.1
MsaG005316 AT5G27130.1 40.000 85 47 2 2 82 6 90 7.57e-11 61.2

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1:-80115368 MsaT005316.1:CDS
AGGCGACCGAAGCTCAATTT+TGG 0.280062 1:-80115639 MsaT005316.1:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 1:+80115440 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 1:+80115433 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 1:-80115619 MsaT005316.1:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 1:+80115776 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1:-80115367 MsaT005316.1:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1:-80115578 MsaT005316.1:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1:-80115527 MsaT005316.1:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1:-80115382 MsaT005316.1:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 1:-80115540 MsaT005316.1:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 1:+80115692 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1:-80115609 MsaT005316.1:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 1:+80115823 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1:+80115585 None:intergenic
CACTTGCAAGTTGCTTTCGT+TGG 0.444023 1:+80115966 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1:-80115618 MsaT005316.1:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1:-80115608 MsaT005316.1:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1:+80115584 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 1:+80115607 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 1:+80115443 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1:+80115385 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1:-80115584 MsaT005316.1:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1:+80115732 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 1:+80115822 None:intergenic
AGCCCACCAAAATTGAGCTT+CGG 0.515026 1:+80115633 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1:+80115906 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1:+80115386 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1:+80115606 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 1:-80115704 MsaT005316.1:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 1:+80115321 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 1:-80115830 MsaT005316.1:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1:-80115942 MsaT005316.1:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1:-80115366 MsaT005316.1:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1:+80115373 None:intergenic
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1:-80116029 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 1:+80115853 None:intergenic
GGAGGTGGATATGGTCCCTC+CGG 0.565894 1:-80115340 MsaT005316.1:CDS
GCTGGAAACATCTGAGCTTG+TGG 0.568464 1:+80115424 None:intergenic
GGATTTGGTTGATGGTGGAG+AGG 0.568530 1:+80115448 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1:-80115943 MsaT005316.1:CDS
AGAGCTAAGCGACTTGCGCA+AGG 0.585527 1:-80115659 MsaT005316.1:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1:-80115904 MsaT005316.1:CDS
ATGGTGGAGAGGCATGTTCG+AGG 0.589348 1:+80115459 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1:+80115891 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 1:-80116033 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 1:+80115509 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1:-80115365 MsaT005316.1:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 1:-80115787 MsaT005316.1:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1:+80115929 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1:-80115526 MsaT005316.1:CDS
TGGTGGAGAGGCATGTTCGA+GGG 0.636955 1:+80115460 None:intergenic
TTTGGTTTCAACAATATGGG+GGG 0.638238 1:-80115364 MsaT005316.1:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1:-80115767 MsaT005316.1:CDS
GGAAACATCTGAGCTTGTGG+AGG 0.645017 1:+80115427 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655264 1:+80115324 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 1:+80115827 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.673953 1:+80115325 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 1:+80115762 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1:-80116018 MsaT005316.1:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 1:+80115824 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1:+80115890 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 80115330 80116043 80115330 ID=MsaG005316
Chr1 mRNA 80115330 80116043 80115330 ID=MsaT005316.1;Parent=MsaG005316
Chr1 exon 80115330 80116043 80115330 ID=MsaT005316.1.exon1;Parent=MsaT005316.1
Chr1 CDS 80115330 80116043 80115330 ID=cds.MsaT005316.1;Parent=MsaT005316.1
Gene Sequence

>MsaT005316.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTAAGCGACTTGCGCAAGGCGACCGAAGCTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATGCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGTCCCTCCGGATTCTTTTGA
Protein sequence

>MsaT005316.1

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATEAQFWWAGPVDGMNRAQLELFKKALDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNMPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF*