AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005339

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005339 MtrunA17_Chr1g0206991 90.710 183 17 0 1 183 1 183 5.43e-122 342
MsaG005339 MtrunA17_Chr1g0206721 88.462 182 21 0 1 182 1 182 1.32e-118 335
MsaG005339 MtrunA17_Chr3g0099421 84.615 182 28 0 1 182 26 207 2.09e-115 328
MsaG005339 MtrunA17_Chr8g0355091 85.165 182 27 0 1 182 1 182 3.92e-114 324
MsaG005339 MtrunA17_Chr1g0206701 84.615 182 28 0 1 182 1 182 2.17e-113 322
MsaG005339 MtrunA17_Chr2g0292791 85.165 182 27 0 1 182 1 182 8.16e-113 320
MsaG005339 MtrunA17_Chr1g0149391 84.066 182 29 0 1 182 1 182 6.19e-112 318
MsaG005339 MtrunA17_Chr3g0099411 76.923 182 23 1 1 182 1 163 1.16e-94 274
MsaG005339 MtrunA17_Chr1g0206691 78.182 165 36 0 18 182 1 165 2.25e-93 271
MsaG005339 MtrunA17_Chr1g0208561 73.077 182 41 1 1 182 1 174 1.83e-91 266
MsaG005339 MtrunA17_Chr3g0089141 73.626 182 40 1 1 182 1 174 2.18e-91 266
MsaG005339 MtrunA17_Chr2g0325971 71.429 182 44 1 1 182 1 174 2.93e-87 255
MsaG005339 MtrunA17_Chr1g0208581 70.330 182 46 1 1 182 1 174 1.80e-86 253
MsaG005339 MtrunA17_Chr1g0188671 67.582 182 59 0 1 182 39 220 2.31e-86 255
MsaG005339 MtrunA17_Chr5g0419601 66.851 181 60 0 1 181 1 181 6.31e-85 250
MsaG005339 MtrunA17_Chr1g0187361 67.033 182 60 0 1 182 1 182 2.76e-84 248
MsaG005339 MtrunA17_Chr2g0300441 68.681 182 57 0 1 182 1 182 1.47e-83 246
MsaG005339 MtrunA17_Chr5g0422941 63.736 182 66 0 1 182 1 182 4.69e-83 245
MsaG005339 MtrunA17_Chr2g0317481 63.736 182 66 0 1 182 1 182 5.05e-81 240
MsaG005339 MtrunA17_Chr2g0317451 63.736 182 66 0 1 182 1 182 6.14e-81 240
MsaG005339 MtrunA17_Chr5g0422421 65.934 182 62 0 1 182 1 182 4.74e-80 238
MsaG005339 MtrunA17_Chr7g0238991 65.269 167 57 1 16 181 27 193 7.59e-71 214
MsaG005339 MtrunA17_Chr2g0300421 70.149 134 40 0 1 134 1 134 1.80e-63 193
MsaG005339 MtrunA17_Chr3g0085241 51.176 170 83 0 3 172 35 204 5.88e-61 189
MsaG005339 MtrunA17_Chr3g0119901 53.012 166 78 0 7 172 7 172 5.03e-60 186
MsaG005339 MtrunA17_Chr3g0089151 69.231 130 40 0 1 130 1 130 8.28e-60 182
MsaG005339 MtrunA17_Chr3g0111931 63.107 103 38 0 21 123 2 104 2.08e-42 137
MsaG005339 MtrunA17_Chr2g0333981 37.500 168 101 1 5 172 8 171 7.53e-37 125
MsaG005339 MtrunA17_Chr8g0379021 38.554 166 92 2 5 167 8 166 3.39e-35 121
MsaG005339 MtrunA17_Chr1g0187351 83.607 61 10 0 18 78 1 61 1.96e-32 111
MsaG005339 MtrunA17_Chr4g0018951 40.645 155 80 2 5 159 8 150 1.59e-30 109
MsaG005339 MtrunA17_Chr3g0111841 83.051 59 10 0 15 73 2 60 2.81e-30 105
MsaG005339 MtrunA17_Chr4g0071601 36.313 179 98 3 5 172 8 181 2.24e-28 104
MsaG005339 MtrunA17_Chr1g0175601 46.535 101 52 1 9 109 2 100 1.39e-26 99.8
MsaG005339 MtrunA17_Chr1g0169761 42.361 144 65 5 9 136 2 143 1.47e-25 97.1
MsaG005339 MtrunA17_Chr8g0357771 46.535 101 52 1 9 109 2 100 2.12e-25 96.7
MsaG005339 MtrunA17_Chr8g0376821 59.155 71 29 0 9 79 2 72 3.26e-25 96.3
MsaG005339 MtrunA17_Chr8g0356071 40.152 132 67 3 9 135 2 126 5.17e-25 95.1
MsaG005339 MtrunA17_Chr1g0175611 45.045 111 58 2 9 118 2 110 6.41e-25 95.1
MsaG005339 MtrunA17_Chr1g0180591 44.554 101 54 1 9 109 2 100 1.01e-24 94.7
MsaG005339 MtrunA17_Chr4g0074101 43.000 100 55 1 9 108 2 99 3.29e-24 94.0
MsaG005339 MtrunA17_Chr3g0111831 68.852 61 19 0 16 76 11 71 4.09e-24 90.5
MsaG005339 MtrunA17_Chr4g0052061 36.842 133 72 3 9 131 2 132 4.46e-22 87.4
MsaG005339 MtrunA17_Chr4g0049901 33.540 161 91 3 10 160 29 183 4.19e-20 84.3
MsaG005339 MtrunA17_Chr5g0412461 37.037 135 73 3 10 134 3 135 2.14e-18 79.3
MsaG005339 MtrunA17_Chr4g0057151 50.000 72 36 0 10 81 3 74 2.28e-18 79.0
MsaG005339 MtrunA17_Chr3g0097101 44.318 88 49 0 3 90 11 98 2.87e-18 79.3
MsaG005339 MtrunA17_Chr5g0412271 36.029 136 75 3 9 134 2 135 3.08e-18 79.0
MsaG005339 MtrunA17_Chr8g0351031 34.320 169 94 6 10 166 3 166 3.15e-18 79.0
MsaG005339 MtrunA17_Chr4g0052081 52.174 69 33 0 9 77 2 70 4.25e-18 77.4
MsaG005339 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 8.63e-18 76.3
MsaG005339 MtrunA17_Chr2g0284911 41.346 104 60 1 9 112 17 119 1.02e-17 78.2
MsaG005339 MtrunA17_Chr3g0077501 48.529 68 35 0 9 76 2 69 1.51e-17 77.0
MsaG005339 MtrunA17_Chr8g0380021 50.000 68 34 0 9 76 18 85 1.13e-16 75.1
MsaG005339 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 1.30e-16 74.7
MsaG005339 MtrunA17_Chr5g0427401 48.529 68 35 0 9 76 2 69 1.47e-16 74.3
MsaG005339 MtrunA17_Chr7g0246431 49.254 67 34 0 10 76 3 69 1.76e-16 73.9
MsaG005339 MtrunA17_Chr8g0351051 45.570 79 41 1 9 85 2 80 1.79e-16 74.7
MsaG005339 MtrunA17_Chr4g0061691 44.928 69 37 1 9 76 2 70 3.98e-16 73.6
MsaG005339 MtrunA17_Chr3g0134451 37.008 127 72 4 9 129 2 126 4.06e-16 74.7
MsaG005339 MtrunA17_Chr4g0020221 50.000 68 34 0 9 76 2 69 5.33e-16 73.6
MsaG005339 MtrunA17_Chr6g0474371 46.377 69 36 1 9 76 2 70 5.79e-16 72.4
MsaG005339 MtrunA17_Chr1g0173161 57.143 56 24 0 9 64 2 57 8.89e-16 68.9
MsaG005339 MtrunA17_Chr5g0411691 48.529 68 35 0 9 76 2 69 1.75e-15 72.0
MsaG005339 MtrunA17_Chr4g0049541 47.059 68 36 0 9 76 2 69 2.13e-15 71.2
MsaG005339 MtrunA17_Chr6g0455511 47.826 69 35 1 9 76 2 70 2.83e-15 71.2
MsaG005339 MtrunA17_Chr1g0204111 47.059 68 36 0 9 76 18 85 2.95e-15 71.6
MsaG005339 MtrunA17_Chr7g0220121 43.478 69 38 1 9 76 2 70 5.97e-15 70.5
MsaG005339 MtrunA17_Chr5g0420081 43.662 71 37 1 9 79 2 69 1.34e-14 69.3
MsaG005339 MtrunA17_Chr5g0420091 34.400 125 57 3 9 131 2 103 1.69e-14 68.9
MsaG005339 MtrunA17_Chr8g0366231 44.928 69 37 1 9 76 2 70 1.88e-14 68.9
MsaG005339 MtrunA17_Chr5g0404951 47.143 70 35 1 9 76 2 71 2.13e-14 68.9
MsaG005339 MtrunA17_Chr7g0246381 46.269 67 31 1 9 70 2 68 2.21e-14 65.1
MsaG005339 MtrunA17_Chr5g0425191 52.830 53 25 0 9 61 2 54 2.88e-14 65.5
MsaG005339 MtrunA17_Chr2g0308251 44.928 69 38 0 9 77 2 70 2.96e-14 65.1
MsaG005339 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 4.20e-14 68.2
MsaG005339 MtrunA17_Chr1g0159661 46.970 66 34 1 9 74 2 66 4.89e-14 67.0
MsaG005339 MtrunA17_Chr4g0018421 31.159 138 83 5 9 136 2 137 5.12e-14 67.4
MsaG005339 MtrunA17_Chr7g0220111 46.377 69 36 1 9 76 2 70 5.56e-14 67.8
MsaG005339 MtrunA17_Chr3g0125241 42.857 70 38 1 9 76 27 96 9.40e-14 66.6
MsaG005339 MtrunA17_Chr8g0377561 50.000 56 28 0 9 64 2 57 9.97e-14 63.9
MsaG005339 MtrunA17_Chr4g0061671 46.667 60 32 0 9 68 2 61 1.07e-13 66.2
MsaG005339 MtrunA17_Chr4g0044071 49.123 57 29 0 9 65 2 58 1.21e-13 64.3
MsaG005339 MtrunA17_Chr8g0345001 31.447 159 94 3 8 159 17 167 1.46e-13 65.9
MsaG005339 MtrunA17_Chr3g0142191 44.286 70 37 1 9 76 2 71 2.50e-13 65.9
MsaG005339 MtrunA17_Chr3g0122251 46.377 69 36 1 9 76 2 70 4.32e-13 65.5
MsaG005339 MtrunA17_Chr4g0025531 45.122 82 45 0 1 82 1 82 8.71e-13 64.3
MsaG005339 MtrunA17_Chr5g0427921 47.368 57 30 0 9 65 2 58 1.11e-12 60.1
MsaG005339 MtrunA17_Chr5g0417661 42.029 69 34 1 9 77 57 119 5.61e-12 60.1
MsaG005339 MtrunA17_Chr3g0093131 30.769 143 82 4 26 159 36 170 1.54e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005339 AT5G60440.1 54.857 175 76 2 5 176 3 177 2.23e-57 182
MsaG005339 AT2G24840.1 49.693 163 73 4 6 163 60 218 1.67e-44 148
MsaG005339 AT4G36590.1 46.667 165 76 5 5 160 3 164 1.06e-37 130
MsaG005339 AT1G01530.1 43.750 160 87 2 4 162 2 159 1.64e-36 127
MsaG005339 AT1G65360.1 39.306 173 100 3 5 175 3 172 2.40e-36 126
MsaG005339 AT2G34440.1 42.735 117 58 2 9 121 2 113 6.90e-26 98.2
MsaG005339 AT3G66656.1 41.176 119 66 1 9 123 2 120 1.22e-24 95.1
MsaG005339 AT3G04100.1 31.902 163 105 3 2 159 7 168 1.36e-23 92.8
MsaG005339 AT1G72350.1 53.425 73 32 1 9 81 43 113 1.69e-21 87.8
MsaG005339 AT1G28460.1 32.370 173 107 3 5 174 4 169 3.82e-21 85.9
MsaG005339 AT4G22950.2 40.909 110 62 1 10 119 3 109 6.15e-20 82.4
MsaG005339 AT1G29962.1 30.814 172 112 3 5 169 4 175 1.38e-19 82.0
MsaG005339 AT4G22950.3 40.909 110 62 1 10 119 3 109 2.00e-19 82.4
MsaG005339 AT4G22950.1 40.909 110 62 1 10 119 3 109 2.00e-19 82.4
MsaG005339 AT2G45660.2 50.000 68 34 0 10 77 3 70 5.18e-18 77.0
MsaG005339 AT2G45650.1 50.000 68 34 0 9 76 2 69 9.03e-18 78.6
MsaG005339 AT4G24540.1 37.162 148 76 5 9 156 2 132 9.95e-18 77.8
MsaG005339 AT4G18960.1 45.055 91 48 2 5 94 15 104 1.41e-17 78.2
MsaG005339 AT2G22540.3 37.324 142 65 3 9 134 2 135 1.44e-17 77.8
MsaG005339 AT2G22540.1 37.324 142 65 3 9 134 2 135 1.44e-17 77.8
MsaG005339 AT2G45660.1 50.000 68 34 0 10 77 3 70 1.84e-17 77.0
MsaG005339 AT3G57230.2 47.059 68 36 0 9 76 2 69 2.03e-17 75.5
MsaG005339 AT4G09960.2 43.023 86 48 1 9 93 2 87 3.14e-17 76.6
MsaG005339 AT4G09960.1 43.023 86 48 1 9 93 2 87 3.54e-17 76.6
MsaG005339 AT4G09960.6 43.023 86 48 1 9 93 3 88 3.60e-17 76.6
MsaG005339 AT4G09960.5 43.023 86 48 1 9 93 12 97 5.00e-17 76.3
MsaG005339 AT4G09960.3 43.023 86 48 1 9 93 28 113 5.40e-17 76.6
MsaG005339 AT4G37940.4 32.759 174 84 4 9 154 2 170 6.42e-17 75.5
MsaG005339 AT4G09960.4 43.023 86 48 1 9 93 97 182 9.14e-17 77.0
MsaG005339 AT3G61120.1 50.000 68 34 0 9 76 2 69 1.11e-16 75.5
MsaG005339 AT2G42830.2 50.000 68 34 0 9 76 17 84 1.12e-16 75.5
MsaG005339 AT2G42830.1 50.000 68 34 0 9 76 17 84 1.18e-16 75.5
MsaG005339 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.36e-16 75.1
MsaG005339 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.36e-16 75.1
MsaG005339 AT4G37940.1 48.529 68 35 0 9 76 2 69 1.39e-16 75.1
MsaG005339 AT4G11880.2 48.611 72 36 1 10 80 3 74 1.48e-16 73.9
MsaG005339 AT4G11880.3 48.611 72 36 1 10 80 3 74 1.48e-16 73.9
MsaG005339 AT4G37940.3 48.529 68 35 0 9 76 2 69 1.53e-16 73.6
MsaG005339 AT5G51870.2 52.239 67 32 0 10 76 3 69 1.59e-16 73.6
MsaG005339 AT5G51870.1 52.239 67 32 0 10 76 3 69 1.71e-16 74.3
MsaG005339 AT1G28450.1 29.586 169 109 4 5 163 4 172 2.04e-16 73.6
MsaG005339 AT3G58780.1 49.296 71 36 0 6 76 14 84 2.06e-16 74.7
MsaG005339 AT3G57390.3 48.529 68 35 0 9 76 2 69 2.30e-16 74.3
MsaG005339 AT3G58780.5 49.296 71 36 0 6 76 20 90 2.50e-16 74.7
MsaG005339 AT5G51870.4 52.239 67 32 0 10 76 3 69 2.81e-16 73.9
MsaG005339 AT5G51870.3 52.239 67 32 0 10 76 13 79 2.85e-16 74.3
MsaG005339 AT4G11880.4 48.611 72 36 1 10 80 3 74 2.87e-16 73.9
MsaG005339 AT4G11880.1 48.611 72 36 1 10 80 3 74 2.87e-16 73.9
MsaG005339 AT5G51870.5 48.611 72 37 0 5 76 21 92 3.83e-16 73.2
MsaG005339 AT3G58780.4 49.296 71 36 0 6 76 14 84 4.00e-16 74.7
MsaG005339 AT1G17310.1 51.899 79 36 1 8 86 47 123 5.23e-16 73.2
MsaG005339 AT3G57390.1 48.529 68 35 0 9 76 2 69 5.31e-16 73.9
MsaG005339 AT1G17310.2 51.899 79 36 1 8 86 58 134 5.67e-16 73.2
MsaG005339 AT5G13790.2 41.935 93 45 1 9 101 2 85 5.88e-16 73.9
MsaG005339 AT5G13790.1 50.000 68 34 0 9 76 2 69 7.10e-16 73.6
MsaG005339 AT5G62165.14 47.761 67 35 0 10 76 3 69 7.18e-16 70.1
MsaG005339 AT3G30260.1 46.377 69 36 1 9 76 2 70 7.44e-16 73.6
MsaG005339 AT2G22630.1 47.059 68 36 0 9 76 2 69 8.18e-16 72.8
MsaG005339 AT2G22630.2 47.059 68 36 0 9 76 2 69 8.18e-16 72.8
MsaG005339 AT5G62165.17 47.761 67 35 0 10 76 3 69 8.62e-16 71.2
MsaG005339 AT5G62165.12 47.761 67 35 0 10 76 3 69 8.62e-16 71.2
MsaG005339 AT5G62165.11 47.761 67 35 0 10 76 3 69 8.62e-16 71.2
MsaG005339 AT5G62165.6 47.761 67 35 0 10 76 3 69 1.30e-15 70.9
MsaG005339 AT5G62165.9 47.761 67 35 0 10 76 3 69 1.30e-15 70.9
MsaG005339 AT5G62165.7 47.761 67 35 0 10 76 3 69 1.30e-15 70.9
MsaG005339 AT5G62165.8 47.761 67 35 0 10 76 3 69 1.30e-15 70.9
MsaG005339 AT5G62165.13 47.761 67 35 0 10 76 3 69 1.30e-15 70.9
MsaG005339 AT5G10140.2 49.275 69 34 1 9 76 2 70 1.51e-15 70.9
MsaG005339 AT5G51860.2 50.746 67 33 0 10 76 3 69 2.25e-15 71.2
MsaG005339 AT5G10140.4 49.275 69 34 1 9 76 2 70 2.61e-15 70.5
MsaG005339 AT5G10140.3 49.275 69 34 1 9 76 2 70 2.72e-15 70.9
MsaG005339 AT5G62165.3 47.761 67 35 0 10 76 3 69 2.85e-15 71.2
MsaG005339 AT5G62165.1 47.761 67 35 0 10 76 3 69 2.85e-15 71.2
MsaG005339 AT5G62165.2 47.761 67 35 0 10 76 3 69 2.85e-15 71.2
MsaG005339 AT5G62165.10 47.761 67 35 0 10 76 3 69 2.88e-15 70.9
MsaG005339 AT5G62165.4 47.761 67 35 0 10 76 3 69 2.88e-15 70.9
MsaG005339 AT5G51860.1 50.746 67 33 0 10 76 3 69 2.99e-15 71.2
MsaG005339 AT5G10140.1 49.275 69 34 1 9 76 2 70 3.01e-15 70.9
MsaG005339 AT5G60910.1 47.887 71 34 1 9 79 2 69 3.02e-15 71.6
MsaG005339 AT2G14210.1 46.377 69 36 1 9 76 2 70 4.08e-15 71.2
MsaG005339 AT1G77950.3 43.421 76 41 2 9 83 2 76 4.53e-15 71.2
MsaG005339 AT1G77950.2 43.421 76 41 2 9 83 2 76 4.53e-15 71.2
MsaG005339 AT1G77950.1 43.421 76 41 2 9 83 2 76 4.53e-15 71.2
MsaG005339 AT1G77950.4 43.421 76 41 2 9 83 2 76 4.53e-15 71.2
MsaG005339 AT1G77980.1 46.479 71 37 1 9 78 2 72 4.56e-15 72.0
MsaG005339 AT5G20240.2 30.469 128 67 3 9 114 2 129 4.72e-15 69.3
MsaG005339 AT5G20240.1 30.469 128 67 3 9 114 2 129 4.88e-15 70.5
MsaG005339 AT2G14210.2 46.377 69 36 1 9 76 2 70 4.97e-15 70.9
MsaG005339 AT1G22130.1 42.683 82 45 2 9 89 2 82 8.57e-15 71.2
MsaG005339 AT1G26310.1 46.377 69 36 1 9 76 2 70 8.74e-15 70.5
MsaG005339 AT1G71692.1 44.928 69 37 1 10 77 3 71 1.08e-14 69.7
MsaG005339 AT1G69120.2 46.377 69 36 1 9 76 2 70 1.09e-14 70.1
MsaG005339 AT2G22540.2 56.364 55 24 0 10 64 3 57 1.25e-14 69.7
MsaG005339 AT1G47760.1 34.483 116 61 3 9 123 2 103 1.28e-14 68.9
MsaG005339 AT1G69120.1 46.479 71 35 1 9 79 2 69 2.27e-14 69.3
MsaG005339 AT5G65050.2 44.928 69 37 1 9 76 2 70 7.00e-14 66.6
MsaG005339 AT5G23260.4 49.351 77 35 2 5 77 12 88 7.61e-14 68.2
MsaG005339 AT2G03710.3 45.714 70 36 2 9 76 2 71 7.81e-14 67.0
MsaG005339 AT5G23260.1 49.351 77 35 2 5 77 12 88 8.41e-14 67.8
MsaG005339 AT5G23260.2 49.296 71 34 1 9 77 2 72 1.15e-13 67.4
MsaG005339 AT5G23260.3 49.296 71 34 1 9 77 2 72 1.26e-13 67.0
MsaG005339 AT5G15800.1 46.377 69 36 1 9 76 2 70 1.29e-13 67.4
MsaG005339 AT3G54340.1 42.857 70 38 1 9 76 2 71 1.34e-13 67.0
MsaG005339 AT5G65070.4 43.478 69 38 1 9 76 2 70 1.36e-13 65.1
MsaG005339 AT5G65050.5 44.928 69 37 1 9 76 2 70 1.61e-13 65.9
MsaG005339 AT5G65050.3 44.928 69 37 1 9 76 2 70 1.64e-13 66.2
MsaG005339 AT5G65050.1 44.928 69 37 1 9 76 2 70 1.94e-13 65.9
MsaG005339 AT5G15800.2 46.377 69 36 1 9 76 2 70 1.98e-13 67.0
MsaG005339 AT3G58780.3 49.206 63 32 0 6 68 14 76 2.09e-13 67.0
MsaG005339 AT5G65070.1 43.478 69 38 1 9 76 2 70 2.48e-13 65.9
MsaG005339 AT5G65060.3 44.928 69 37 1 9 76 2 70 2.80e-13 65.5
MsaG005339 AT5G65080.3 30.729 192 105 8 9 182 9 190 3.14e-13 65.5
MsaG005339 AT2G03710.2 45.714 70 36 2 9 76 2 71 3.17e-13 66.2
MsaG005339 AT2G03710.1 45.714 70 36 2 9 76 2 71 3.24e-13 66.2
MsaG005339 AT3G58780.2 49.180 61 31 0 6 66 14 74 3.76e-13 65.9
MsaG005339 AT5G65060.2 44.928 69 37 1 9 76 2 70 4.25e-13 64.7
MsaG005339 AT5G65060.1 44.928 69 37 1 9 76 2 70 4.64e-13 65.1
MsaG005339 AT3G02310.2 44.928 69 37 1 9 76 2 70 4.89e-13 65.1
MsaG005339 AT5G65070.2 43.478 69 38 1 9 76 2 70 4.95e-13 65.5
MsaG005339 AT1G24260.1 44.928 69 37 1 9 76 2 70 5.29e-13 65.5
MsaG005339 AT1G24260.2 44.928 69 37 1 9 76 2 70 5.57e-13 65.5
MsaG005339 AT1G24260.3 44.928 69 37 1 9 76 2 70 6.45e-13 65.1
MsaG005339 AT5G65070.5 43.478 69 38 1 9 76 2 70 7.18e-13 64.7
MsaG005339 AT1G46408.1 34.228 149 84 6 10 144 5 153 1.45e-12 64.7
MsaG005339 AT3G02310.1 44.928 69 37 1 9 76 2 70 3.36e-12 63.5
MsaG005339 AT5G49490.1 39.744 78 43 1 5 78 41 118 4.32e-12 63.5
MsaG005339 AT1G69540.1 36.036 111 61 3 9 117 2 104 5.63e-12 63.5
MsaG005339 AT4G37435.1 33.684 95 57 2 9 97 2 96 6.55e-12 61.6
MsaG005339 AT5G65070.3 47.368 57 30 0 9 65 2 58 7.09e-12 62.4
MsaG005339 AT2G26320.1 41.429 70 39 1 9 76 18 87 7.30e-12 59.7
MsaG005339 AT1G69540.2 36.036 111 61 3 9 117 2 104 7.48e-12 63.2
MsaG005339 AT1G18750.3 33.333 123 76 5 9 127 2 122 1.55e-11 62.4
MsaG005339 AT5G49420.1 37.778 90 49 2 5 87 3 92 1.92e-11 62.0
MsaG005339 AT1G18750.4 34.783 92 57 2 9 97 2 93 3.12e-11 61.6
MsaG005339 AT1G18750.1 34.783 92 57 2 9 97 2 93 3.32e-11 61.2
MsaG005339 AT5G65080.2 47.273 55 29 0 9 63 9 63 5.22e-11 59.3

Find 51 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCATGGTACCGTTGTTT+TGG 0.317431 1:-80366275 None:intergenic
GTCCCGTTGATGGGATGAAC+AGG 0.345518 1:+80366442 MsaT005339.1:CDS
TGGTTGGCTGGTCCCGTTGA+TGG 0.347475 1:+80366432 MsaT005339.1:CDS
GGTGGTTGATCTGAGTTAGA+TGG 0.362826 1:-80366341 None:intergenic
CTCTCGTTGTTTACTCACCT+GGG 0.364999 1:+80366181 MsaT005339.1:CDS
GCTCTCGTTGTTTACTCACC+TGG 0.366410 1:+80366180 MsaT005339.1:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.370342 1:+80366473 MsaT005339.1:CDS
AACTCAGATCAACCACCTAT+TGG 0.378745 1:+80366347 MsaT005339.1:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1:+80366524 MsaT005339.1:CDS
TTGTTGCACATCATGCTGAT+AGG 0.402994 1:+80366511 MsaT005339.1:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1:-80366466 None:intergenic
GTTTCTTCTCGATGTCCAAT+AGG 0.442800 1:-80366362 None:intergenic
GATCGAGACTCAACTTTGGT+TGG 0.457866 1:+80366416 MsaT005339.1:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1:-80366467 None:intergenic
GGTGCTACGGTGAGCCTCAA+TGG 0.484756 1:-80366298 None:intergenic
GGTTGGCTGGTCCCGTTGAT+GGG 0.488279 1:+80366433 MsaT005339.1:CDS
GCCCTGTTCATCCCATCAAC+GGG 0.488608 1:-80366444 None:intergenic
GGCCCTGTTCATCCCATCAA+CGG 0.495905 1:-80366445 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1:+80366467 MsaT005339.1:CDS
GAGACTCAACTTTGGTTGGC+TGG 0.499959 1:+80366420 MsaT005339.1:CDS
GTGGTTGATCTGAGTTAGAT+GGG 0.506455 1:-80366340 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1:-80366145 None:intergenic
GCTCACGCACGTTGGTGCTA+CGG 0.531315 1:-80366311 None:intergenic
TGTTTACTCACCTGGGGAGA+AGG 0.536541 1:+80366188 MsaT005339.1:CDS
ATCTATGACTGTATCAACAC+TGG 0.540768 1:-80366229 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1:+80366109 MsaT005339.1:CDS
CTTCAATCATGTCGAGTGGA+AGG 0.559861 1:+80366022 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1:+80366108 MsaT005339.1:CDS
TCTTCTCGATGTCCAATAGG+TGG 0.584648 1:-80366359 None:intergenic
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1:+80366147 MsaT005339.1:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1:-80366198 None:intergenic
TCGAGAAAGTCACTTGCAAG+TGG 0.591713 1:-80366095 None:intergenic
TCTATGACTGTATCAACACT+GGG 0.592150 1:-80366228 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1:-80366160 None:intergenic
TCTCGATCGACTTACGCAAG+TGG 0.597492 1:-80366401 None:intergenic
TCCCGTTGATGGGATGAACA+GGG 0.598148 1:+80366443 MsaT005339.1:CDS
GGGTTTGAGTCGGAGCACCC+TGG 0.608427 1:-80366542 None:intergenic
AGTCGATCGAGACTCAACTT+TGG 0.610036 1:+80366412 MsaT005339.1:CDS
CGGTACCATGCTATCCATTG+AGG 0.610543 1:+80366284 MsaT005339.1:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1:-80366122 None:intergenic
TCTCGTTGTTTACTCACCTG+GGG 0.615216 1:+80366182 MsaT005339.1:CDS
GTGAGCCTCAATGGATAGCA+TGG 0.621366 1:-80366289 None:intergenic
AACAGAGGAAGGGTTTGAGT+CGG 0.630945 1:-80366552 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1:+80366525 MsaT005339.1:CDS
TGTGCTTCAATCATGTCGAG+TGG 0.638522 1:+80366018 None:intergenic
TGACTGTATCAACACTGGGG+TGG 0.658147 1:-80366224 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1:+80366033 MsaT005339.1:CDS
GGTATTAAGCTCACGCACGT+TGG 0.704138 1:-80366319 None:intergenic
CGAGTCCCATCCCAAAACAA+CGG 0.708361 1:+80366264 MsaT005339.1:CDS
GAGCAACATCTGCACCACAG+AGG 0.729838 1:-80366161 None:intergenic
CTATGACTGTATCAACACTG+GGG 0.806256 1:-80366227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 80366030 80366581 80366030 ID=MsaG005339
Chr1 mRNA 80366030 80366581 80366030 ID=MsaT005339.1;Parent=MsaG005339
Chr1 exon 80366030 80366581 80366030 ID=MsaT005339.1.exon1;Parent=MsaT005339.1
Chr1 CDS 80366030 80366581 80366030 ID=cds.MsaT005339.1;Parent=MsaT005339.1
Gene Sequence

>MsaT005339.1

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCCACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTACTCACCTGGGGAGAAGGTATTTTCATTTGGCCACCCCAGTGTTGATACAGTCATAGATCGTTATCTCTCTCGAGTCCCATCCCAAAACAACGGTACCATGCTATCCATTGAGGCTCACCGTAGCACCAACGTGCGTGAGCTTAATACCCATCTAACTCAGATCAACCACCTATTGGACATCGAGAAGAAACGTGCTGAAGAGTTGATCCACTTGCGTAAGTCGATCGAGACTCAACTTTGGTTGGCTGGTCCCGTTGATGGGATGAACAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGAAGAGCTTAAGAAACTTGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCGACTCAAACCCTTCCTCTGTTTTTTTGA
Protein sequence

>MsaT005339.1

MSSGRKSRGRQKIEMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADVALVVYSPGEKVFSFGHPSVDTVIDRYLSRVPSQNNGTMLSIEAHRSTNVRELNTHLTQINHLLDIEKKRAEELIHLRKSIETQLWLAGPVDGMNRAQLELFKKALEELKKLVAHHADRLVIQGAPTQTLPLFF*