AlfalfaGEDB | MsaG005363

M. sativa ssp. caerulea / MsaG005363

KEGG: -
GO: GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006970 GO:0006979 GO:0008150 GO:0008152 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009611 GO:0009628 GO:0009642 GO:0009644 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010035 GO:0010117 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015979 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0035264 GO:0040007 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044237 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048589 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF13912.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005363	XP_039685924.1	80.212	283	17	9	3	279	2	251	6.55e-141	406

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005363	sp\|Q96289\|ZAT10_ARATH	41.667	276	94	13	4	269	1	219	2.67e-45	155

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005363	tr\|G7IEV2\|G7IEV2_MEDTR	80.212	283	17	9	3	279	2	251	3.13e-141	406

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005363	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005363	MtrunA17_Chr1g0207451	80.212	283	17	9	3	279	2	251	6.02e-145	406
MsaG005363	MtrunA17_Chr3g0134711	46.014	276	98	12	4	273	1	231	1.00e-54	177
MsaG005363	MtrunA17_Chr1g0152661	45.415	229	67	9	55	270	38	221	9.26e-46	154
MsaG005363	MtrunA17_Chr4g0012791	32.000	200	72	5	41	176	136	335	1.63e-20	90.9
MsaG005363	MtrunA17_Chr7g0263121	43.966	116	49	4	60	175	15	114	2.96e-20	85.5
MsaG005363	MtrunA17_Chr7g0231181	31.188	202	86	5	55	227	164	341	4.12e-19	85.9
MsaG005363	MtrunA17_Chr4g0012691	35.664	143	73	4	94	225	212	346	4.63e-19	85.9
MsaG005363	MtrunA17_Chr1g0182161	36.257	171	79	8	65	225	1	151	2.26e-16	75.1
MsaG005363	MtrunA17_Chr7g0222831	34.074	135	66	3	60	192	12	125	1.78e-15	72.8
MsaG005363	MtrunA17_Chr1g0180311	31.980	197	91	6	60	224	81	266	3.53e-15	73.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005363	AT1G27730.1	41.667	276	94	13	4	269	1	219	2.71e-46	155
MsaG005363	AT3G19580.1	42.979	235	88	10	55	279	66	264	4.58e-43	148
MsaG005363	AT3G19580.2	42.979	235	88	10	55	279	66	264	4.58e-43	148
MsaG005363	AT3G49930.1	52.381	147	55	4	37	176	34	172	2.47e-38	134
MsaG005363	AT5G67450.1	39.683	252	105	9	4	223	1	237	2.71e-38	135
MsaG005363	AT5G04340.1	40.000	240	96	8	41	269	30	232	2.24e-37	132
MsaG005363	AT5G43170.1	39.004	241	79	12	4	232	1	185	5.00e-30	112
MsaG005363	AT3G60580.1	36.022	186	93	3	55	234	122	287	1.01e-25	103
MsaG005363	AT2G45120.1	36.872	179	81	6	55	224	146	301	6.84e-24	99.0
MsaG005363	AT1G49900.1	35.047	214	109	8	44	230	117	327	3.62e-22	96.7

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Find 70 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCACGGTGGCTGATGG+AGG	0.597416	1:-80579679	None:intergenic
AACAGAAACGGTGTCGTTGA+CGG	0.479133	1:-80579457	None:intergenic
AACATTAATCTTGGTCTTCT+TGG	0.185197	1:-80579766	None:intergenic
AACGGTGTCGTTGACGGTTG+TGG	0.349088	1:-80579451	None:intergenic
AAGATTAATGTTAATCTCGC+CGG	0.533608	1:+80579777	MsaT005363.1:CDS
AATGGAATAGTAGCTCCTGT+TGG	0.598789	1:-80579087	None:intergenic
AATTGAGGTCAAATCCACGG+TGG	0.794635	1:-80579689	None:intergenic
ACTGAATTCTGGTCTCCGGT+TGG	0.515567	1:+80579726	MsaT005363.1:CDS
AGAGGTAGAAAGTCCGTTGC+CGG	0.419568	1:+80579812	MsaT005363.1:CDS
AGATATTCTTCTTCAGTGGG+TGG	0.522083	1:-80579207	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80579051	80579890	80579051	ID=MsaG005363
Chr1	mRNA	80579051	80579890	80579051	ID=MsaT005363.1;Parent=MsaG005363
Chr1	exon	80579051	80579890	80579051	ID=MsaT005363.1.exon1;Parent=MsaT005363.1
Chr1	CDS	80579051	80579890	80579051	ID=cds.MsaT005363.1;Parent=MsaT005363.1

Gene Sequence

>MsaT005363.1

ATGGCCGCTTTAGAGTTACAAGCTTTGAATTCTTCTCCAACAGGAGCTACTATTCCATTCCCACGCTTCAAACACCAACAACAAGAAAATCAAGAGATTCATGAACGTGAGTCTTTGGTCAAAAAGAAACGATCAAAACGGCCGCGTATTGGTAACCCACCCACTGAAGAAGAATATCTCGCTCTCTGTCTCATCATGCTCTCTCAAAGCAACAACAACGAAAAAATCAACATCTCTGAATCATCATCTTCACAACAACAACAACAACCGTTGCAGTCGCCGCCATCACCGGTGAAGCTGAATCACAAGTGCAGTGTTTGCAACAAAGCTTTCCCATCTTATCAAGCACTTGGTGGTCACAAAGCCAGCCACCGTAAATCGTCATCAGAAAACCATCAATCCACAACCGTCAACGACACCGTTTCTGTTTCCGTCTCAACCGTCACCGGAAAGATGCACGAGTGTTCCATTTGTCACAAGAGTTTTCCTACCGGTCAAGCTCTCGGTGGACACAAACGATGCCACTATGAAGGAGTCATCAATAACAGCAATCATAATCATAATAACAGTAACAGCAACGTCAATAACAGCAGCGGAATCACAGTCTCCGACGGCGGCGGCGCGTCCTCCTCCATCAGCCACCGTGGATTTGACCTCAATTTACCAGCGCCTCTCACTGAATTCTGGTCTCCGGTTGGATTCGGTGGTGGAGATTCCAAGAAGACCAAGATTAATGTTAATCTCGCCGGAATCAATGAACAAGAGGTAGAAAGTCCGTTGCCGGTAACCGCTAAAAGGCCGCGTTTGTTTTCCGGTGAAGACAATGATGAAACGGTGTAG

Protein sequence

>MsaT005363.1

MAALELQALNSSPTGATIPFPRFKHQQQENQEIHERESLVKKKRSKRPRIGNPPTEEEYLALCLIMLSQSNNNEKINISESSSSQQQQQPLQSPPSPVKLNHKCSVCNKAFPSYQALGGHKASHRKSSSENHQSTTVNDTVSVSVSTVTGKMHECSICHKSFPTGQALGGHKRCHYEGVINNSNHNHNNSNSNVNNSSGITVSDGGGASSSISHRGFDLNLPAPLTEFWSPVGFGGGDSKKTKINVNLAGINEQEVESPLPVTAKRPRLFSGEDNDETV*