AlfalfaGEDB | MsaG005397

M. sativa ssp. caerulea / MsaG005397

KEGG: K07739
GO: GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0002097 GO:0002098 GO:0003674 GO:0003824 GO:0004402 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005719 GO:0005737 GO:0005829 GO:0006139 GO:0006325 GO:0006355 GO:0006357 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0007389 GO:0008033 GO:0008080 GO:0008150 GO:0008152 GO:0008283 GO:0009292 GO:0009294 GO:0009451 GO:0009653 GO:0009798 GO:0009889 GO:0009966 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010646 GO:0010928 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0022603 GO:0023051 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033588 GO:0034212 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0040007 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044454 GO:0044464 GO:0044764 GO:0046483 GO:0048583 GO:0048589 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0051276 GO:0051704 GO:0060255 GO:0061733 GO:0065001 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090708 GO:0099402 GO:1900618 GO:1901360 GO:1901371 GO:1901564 GO:1903506 GO:1905392 GO:1905421 GO:1905428 GO:2000024 GO:2000025 GO:2000026 GO:2000112 GO:2001141
PFAM: PF04055.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005397	XP_013470032.1	98.934	563	6	0	1	563	1	563	0.0	1155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005397	sp\|Q93ZR1\|ELP3_ARATH	91.327	565	47	1	1	563	1	565	0.0	1087

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005397	tr\|A0A072W1A9\|A0A072W1A9_MEDTR	98.934	563	6	0	1	563	1	563	0.0	1155

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005397	TR	GNAT

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005397	MtrunA17_Chr1g0207811	98.934	563	6	0	1	563	1	563	0.0	1155

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005397	AT5G50320.1	91.327	565	47	1	1	563	1	565	0.0	1087

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Find 176 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCCGTCCGAACCGCATC+TGG	0.355392	1:+80983966	MsaT005397.1:CDS
AAAGGAGGCTTTGAAGGCCA+CGG	0.542814	1:+80983732	MsaT005397.1:CDS
AAATCGGAGTCAGGACCGCC+AGG	0.474986	1:-80984068	None:intergenic
AAATTGGGATATGAGCTTGA+AGG	0.569511	1:+80987544	MsaT005397.1:CDS
AACAACGGCTATTCCAGATG+CGG	0.680136	1:-80983979	None:intergenic
AACATTTGTGTCTACTGCCC+TGG	0.483658	1:+80984050	MsaT005397.1:CDS
AACCCTTATGTGCAGACAAG+AGG	0.578250	1:+80984272	MsaT005397.1:CDS
AACTTGTGGACATCATAGCA+AGG	0.660784	1:+80986357	MsaT005397.1:CDS
AACTTTCATGTCCCTTCCGG+CGG	0.546193	1:+80984464	MsaT005397.1:CDS
AAGCCCATCTGCTCTAAACA+AGG	0.553799	1:-80986125	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	80983684	80987594	80983684	ID=MsaG005397
Chr1	mRNA	80983684	80987594	80983684	ID=MsaT005397.1;Parent=MsaG005397
Chr1	exon	80983684	80984153	80983684	ID=MsaT005397.1.exon1;Parent=MsaT005397.1
Chr1	CDS	80983684	80984153	80983684	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80984268	80984337	80984268	ID=MsaT005397.1.exon2;Parent=MsaT005397.1
Chr1	CDS	80984268	80984337	80984268	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80984441	80984613	80984441	ID=MsaT005397.1.exon3;Parent=MsaT005397.1
Chr1	CDS	80984441	80984613	80984441	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80985525	80985699	80985525	ID=MsaT005397.1.exon4;Parent=MsaT005397.1
Chr1	CDS	80985525	80985699	80985525	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80986043	80986209	80986043	ID=MsaT005397.1.exon5;Parent=MsaT005397.1
Chr1	CDS	80986043	80986209	80986043	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80986334	80986553	80986334	ID=MsaT005397.1.exon6;Parent=MsaT005397.1
Chr1	CDS	80986334	80986553	80986334	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80986675	80986779	80986675	ID=MsaT005397.1.exon7;Parent=MsaT005397.1
Chr1	CDS	80986675	80986779	80986675	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80987027	80987179	80987027	ID=MsaT005397.1.exon8;Parent=MsaT005397.1
Chr1	CDS	80987027	80987179	80987027	ID=cds.MsaT005397.1;Parent=MsaT005397.1
Chr1	exon	80987436	80987594	80987436	ID=MsaT005397.1.exon9;Parent=MsaT005397.1
Chr1	CDS	80987436	80987594	80987436	ID=cds.MsaT005397.1;Parent=MsaT005397.1

Gene Sequence

>MsaT005397.1

ATGGCAACTGCAATGGTGGCAGAGGCAAAAAAGGCACCACGTCCTGGGAAAGGAGGCTTTGAAGGCCACGGCCTTAGTGAAGAAGAAGCACGTGTTCGAGCCATTGCAGAGATTGTAAACTCCATGGTCGACTTATCTCATAAAGGCCACAAAGTTGATCTCAACGCTCTCAAGTCTGCTGCGTGCCGTAAGTATGGCCTCTCACGTGCACCCAAACTTGTTGAGATGATTGCAGCTTTACCAGACTCCGAACGAGAGGTTCTTCTTCCCAAACTCCGAGCCAAACCCGTCCGAACCGCATCTGGAATAGCCGTTGTTGCTGTCATGTCAAAGCCTCATCGTTGCCCTCACATTGCCACCACCGGTAACATTTGTGTCTACTGCCCTGGCGGTCCTGACTCCGATTTTGAATACAGTACTCAGTCTTACACTGGTTATGAACCTACCAGTATGCGTGCAATTCGAGCAAGGTATAACCCTTATGTGCAGACAAGAGGTAGGATTGATCAGCTTAAGCGTTTAGGTCACAGTGTAGACAAGGTTGAGTTTATATTAATGGGTGGAACTTTCATGTCCCTTCCGGCGGATTACCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCCAATGTAGAAGAGGCGGTGACGTACTCTGAGCATAGTGCAACCAAGTGTATTGGCATGACAATTGAAACGAGGCCAGATTATTGTCTTGGGCCTCACCTGCGACAAATGCTTTCTTACGGTTGTACACGATTGGAGATTGGAGTCCAAAGCACTTACGAGGATGTTGCTCGTGACACTAATAGAGGACATACTGTTGCTGCTGTAGCTGATTGTTTTTGCCTGGCTAAAGATGCCGGTTTCAAGGTAGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAAAGGGACATGGAAAGTTTCCGAGAGTTTTTTGAAAGTCCCTTGTTTAGAGCAGATGGGCTTAAAATTTACCCCACTCTTGTAATACGTGGAACTGGGCTTTATGAGCTCTGGAAAACTGGCAGGTATAGAAATTATCCACCTGAGCAACTTGTGGACATCATAGCAAGGATCCTTGCAATGGTACCTCCATGGACGCGTGTTTATAGAGTTCAGCGGGATATTCCAATGCCTTTGGTGACCTCTGGGGTTGAGAAAGGGAATCTAAGGGAGTTAGCATTAGCTCGAATGGAAGACTTGGGTTTAAAATGTCGTGATGTTCGGACCAGAGAAGCTGGAATCCAGGATATTCATCACCAAATTAAACCAGAAGAGGTGGAACTTGTTCGTCGTGATTATATGGCAAATGAAGGTTGGGAAACATTTTTGTCATATGAAGATACACGGCAGGATATCCTTGTTGGTTTGTTACGACTGCGAAAATGTGGCCGTAACACTACTTGTCCAGAGCTTATGGGTAAGTGTTCTATTGTTCGTGAGCTCCATGTTTATGGAACTGCTGTACCGGTTCATGGGCGGGATTCTGACAAGCTACAACACCAGGGTTATGGTACACTTCTTATGGAGGAGGCTGAGCGGATTGCTTCGAAAGAACACAGATCAACTAAGATAGCTGTAATTTCTGGGGTTGGCACACGCCATTACTACAGAAAATTGGGATATGAGCTTGAAGGGCCTTACATGATGAAATACCTAATGTAA

Protein sequence

>MsaT005397.1

MATAMVAEAKKAPRPGKGGFEGHGLSEEEARVRAIAEIVNSMVDLSHKGHKVDLNALKSAACRKYGLSRAPKLVEMIAALPDSEREVLLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQTRGRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVTYSEHSATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDMESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIIARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDSDKLQHQGYGTLLMEEAERIASKEHRSTKIAVISGVGTRHYYRKLGYELEGPYMMKYLM*