AlfalfaGEDB | MsaG005463

M. sativa ssp. caerulea / MsaG005463

KEGG: K04454 K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006996 GO:0007275 GO:0008150 GO:0009553 GO:0009657 GO:0009658 GO:0009791 GO:0009888 GO:0009889 GO:0009909 GO:0009911 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0010556 GO:0010817 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032879 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048316 GO:0048518 GO:0048580 GO:0048582 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0051049 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0080090 GO:0140110 GO:1903506 GO:2000012 GO:2000026 GO:2000112 GO:2000241 GO:2000243 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005463	XP_003592558.1	91.327	196	17	0	1	196	1	196	4.22e-132	380

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005463	sp\|Q9FKK2\|AGL62_ARATH	52.973	185	80	4	4	181	2	186	4.70e-58	187

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005463	tr\|G7IAT8\|G7IAT8_MEDTR	91.327	196	17	0	1	196	1	196	2.01e-132	380

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005463	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005463	MtrunA17_Chr1g0208561	91.327	196	17	0	1	196	1	196	3.88e-136	380
MsaG005463	MtrunA17_Chr3g0089141	91.327	196	17	0	1	196	1	196	7.33e-135	376
MsaG005463	MtrunA17_Chr1g0208581	87.755	196	24	0	1	196	1	196	6.87e-130	364
MsaG005463	MtrunA17_Chr2g0325971	85.204	196	29	0	1	196	1	196	1.05e-124	351
MsaG005463	MtrunA17_Chr1g0206721	75.490	204	42	1	1	196	1	204	4.41e-109	311
MsaG005463	MtrunA17_Chr8g0355091	74.510	204	44	1	1	196	1	204	7.12e-108	308
MsaG005463	MtrunA17_Chr2g0292791	72.549	204	48	1	1	196	1	204	2.80e-104	300
MsaG005463	MtrunA17_Chr1g0206701	70.588	204	52	1	1	196	1	204	1.18e-101	293
MsaG005463	MtrunA17_Chr1g0149391	70.098	204	53	1	1	196	1	204	1.39e-101	293
MsaG005463	MtrunA17_Chr3g0099421	70.588	204	52	1	1	196	26	229	9.77e-101	291

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005463	AT5G60440.1	52.973	185	80	4	4	181	2	186	4.77e-59	187
MsaG005463	AT2G24840.1	44.221	199	82	5	9	184	63	255	1.40e-44	149
MsaG005463	AT1G01530.1	42.391	184	98	4	4	183	2	181	3.29e-40	137
MsaG005463	AT4G36590.1	44.767	172	85	4	4	167	2	171	8.61e-40	136
MsaG005463	AT1G65360.1	40.984	183	101	4	4	181	2	182	1.77e-38	132
MsaG005463	AT3G04100.1	32.632	190	116	3	2	183	7	192	2.82e-28	105
MsaG005463	AT2G34440.1	37.162	148	91	2	9	156	2	147	3.92e-28	104
MsaG005463	AT3G66656.1	39.370	127	73	1	9	131	2	128	1.23e-24	95.5
MsaG005463	AT4G09960.2	40.580	138	68	5	9	137	2	134	5.21e-23	92.0
MsaG005463	AT4G09960.6	40.580	138	68	5	9	137	3	135	6.46e-23	92.0

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Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGAAAATACCTTTCCACT+AGG	0.627897	1:-81716167	None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG	0.546172	1:-81716114	None:intergenic
ACTTTCTCAAAGCGTCGTAA+CGG	0.503300	1:+81716077	MsaT005463.1:CDS
AGCAGCATCTGCACCACAAA+GGG	0.494828	1:-81716129	None:intergenic
AGCATTGAGTTCACGAACTT+TGG	0.407921	1:-81716288	None:intergenic
AGGAAACAGAGGCTAAGTTT+TGG	0.455034	1:+81716381	MsaT005463.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG	0.448173	1:+81716116	MsaT005463.1:CDS
ATCAAGATTGGGGTGACCAA+AGG	0.581678	1:-81716186	None:intergenic
ATGATGGAGATAAATGTTCG+AGG	0.611297	1:-81716537	None:intergenic
ATTTCAGATTGTTGAGCATT+TGG	0.323276	1:-81716563	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	81715999	81716917	81715999	ID=MsaG005463
Chr1	mRNA	81715999	81716917	81715999	ID=MsaT005463.1;Parent=MsaG005463
Chr1	exon	81715999	81716585	81715999	ID=MsaT005463.1.exon1;Parent=MsaT005463.1
Chr1	CDS	81715999	81716585	81715999	ID=cds.MsaT005463.1;Parent=MsaT005463.1
Chr1	exon	81716914	81716917	81716914	ID=MsaT005463.1.exon2;Parent=MsaT005463.1
Chr1	CDS	81716914	81716917	81716914	ID=cds.MsaT005463.1;Parent=MsaT005463.1

Gene Sequence

>MsaT005463.1

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATTAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGTCGTAACGGGCTCTTCAAGAAGGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTCGTCCCAACCCAAAACGATGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAAAGTTCGTGAACTCAATGCTCAGATGACTCAAATCAAAAACACGCTGGATACCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGAATGAATATGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCAAACTCTTCCATTTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATCTAA

Protein sequence

>MsaT005463.1

MSSARKGRGRQKIEMKKISNESNLQVTFSKRRNGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPTQNDGTMQLIEAHRNAKVRELNAQMTQIKNTLDTEKKIGDEVSHLLKETEAKFWWACPVDGMNMDQLELFKKALEELKKLLIQHATTQTLPFFVGNASSSNIYLHHQPNAQQSEI*