AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005463

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005463 MtrunA17_Chr1g0208561 91.327 196 17 0 1 196 1 196 3.88e-136 380
MsaG005463 MtrunA17_Chr3g0089141 91.327 196 17 0 1 196 1 196 7.33e-135 376
MsaG005463 MtrunA17_Chr1g0208581 87.755 196 24 0 1 196 1 196 6.87e-130 364
MsaG005463 MtrunA17_Chr2g0325971 85.204 196 29 0 1 196 1 196 1.05e-124 351
MsaG005463 MtrunA17_Chr1g0206721 75.490 204 42 1 1 196 1 204 4.41e-109 311
MsaG005463 MtrunA17_Chr8g0355091 74.510 204 44 1 1 196 1 204 7.12e-108 308
MsaG005463 MtrunA17_Chr2g0292791 72.549 204 48 1 1 196 1 204 2.80e-104 300
MsaG005463 MtrunA17_Chr1g0206701 70.588 204 52 1 1 196 1 204 1.18e-101 293
MsaG005463 MtrunA17_Chr1g0149391 70.098 204 53 1 1 196 1 204 1.39e-101 293
MsaG005463 MtrunA17_Chr3g0099421 70.588 204 52 1 1 196 26 229 9.77e-101 291
MsaG005463 MtrunA17_Chr2g0300441 68.137 204 57 1 1 196 1 204 1.30e-95 277
MsaG005463 MtrunA17_Chr5g0419601 65.686 204 62 1 1 196 1 204 2.46e-93 272
MsaG005463 MtrunA17_Chr1g0206991 71.978 182 43 1 1 174 1 182 1.27e-91 265
MsaG005463 MtrunA17_Chr1g0187361 64.216 204 65 1 1 196 1 204 1.09e-90 265
MsaG005463 MtrunA17_Chr2g0317481 63.184 201 66 1 1 193 1 201 1.17e-89 262
MsaG005463 MtrunA17_Chr2g0317451 63.184 201 66 1 1 193 1 201 1.35e-89 262
MsaG005463 MtrunA17_Chr1g0188671 62.745 204 68 1 1 196 39 242 2.36e-88 260
MsaG005463 MtrunA17_Chr5g0422421 63.725 204 66 1 1 196 1 204 4.17e-88 258
MsaG005463 MtrunA17_Chr3g0099411 66.327 196 55 2 1 196 1 185 5.34e-87 255
MsaG005463 MtrunA17_Chr1g0206691 64.706 187 58 1 18 196 1 187 5.09e-84 248
MsaG005463 MtrunA17_Chr5g0422941 60.199 201 72 1 1 193 1 201 4.61e-82 243
MsaG005463 MtrunA17_Chr7g0238991 65.193 181 55 1 24 196 36 216 9.50e-79 235
MsaG005463 MtrunA17_Chr2g0300421 79.104 134 28 0 1 134 1 134 7.70e-73 218
MsaG005463 MtrunA17_Chr3g0119901 53.714 175 79 1 9 183 9 181 2.93e-63 194
MsaG005463 MtrunA17_Chr3g0089151 69.697 132 40 0 1 132 1 132 6.33e-63 191
MsaG005463 MtrunA17_Chr3g0085241 51.381 181 86 1 3 183 35 213 1.57e-62 194
MsaG005463 MtrunA17_Chr3g0111931 61.765 102 39 0 21 122 2 103 3.64e-41 135
MsaG005463 MtrunA17_Chr8g0379021 42.424 165 85 2 5 166 8 165 1.31e-39 133
MsaG005463 MtrunA17_Chr2g0333981 40.606 165 88 2 5 166 8 165 1.12e-37 128
MsaG005463 MtrunA17_Chr4g0018951 41.830 153 77 3 22 174 25 165 9.87e-33 115
MsaG005463 MtrunA17_Chr1g0187351 86.885 61 8 0 18 78 1 61 1.02e-32 112
MsaG005463 MtrunA17_Chr3g0111841 77.966 59 13 0 15 73 2 60 4.81e-28 100
MsaG005463 MtrunA17_Chr4g0071601 38.372 172 92 3 5 166 8 175 7.65e-27 100
MsaG005463 MtrunA17_Chr1g0180591 56.164 73 32 0 9 81 2 74 1.20e-24 95.1
MsaG005463 MtrunA17_Chr4g0074101 40.517 116 54 2 9 109 2 117 2.69e-24 94.7
MsaG005463 MtrunA17_Chr1g0169761 39.837 123 72 1 9 131 2 122 3.00e-24 94.0
MsaG005463 MtrunA17_Chr8g0376821 57.971 69 29 0 9 77 2 70 4.72e-24 93.6
MsaG005463 MtrunA17_Chr1g0175601 53.333 75 35 0 9 83 2 76 7.93e-24 92.8
MsaG005463 MtrunA17_Chr1g0175611 53.333 75 35 0 9 83 2 76 1.24e-23 92.0
MsaG005463 MtrunA17_Chr8g0357771 41.270 126 69 2 9 131 2 125 6.07e-23 90.5
MsaG005463 MtrunA17_Chr3g0077501 55.882 68 30 0 9 76 2 69 1.31e-21 88.2
MsaG005463 MtrunA17_Chr3g0111831 63.934 61 22 0 16 76 11 71 2.98e-21 83.6
MsaG005463 MtrunA17_Chr8g0356071 36.154 130 75 2 9 135 2 126 3.20e-21 85.9
MsaG005463 MtrunA17_Chr4g0052061 38.679 106 63 1 9 114 2 105 4.57e-21 85.1
MsaG005463 MtrunA17_Chr8g0351051 51.899 79 36 1 9 85 2 80 6.21e-21 87.0
MsaG005463 MtrunA17_Chr4g0052081 40.566 106 62 1 9 113 2 107 7.48e-21 85.1
MsaG005463 MtrunA17_Chr4g0057151 56.716 67 29 0 10 76 3 69 7.54e-21 85.9
MsaG005463 MtrunA17_Chr3g0134451 47.059 102 51 3 9 109 2 101 1.17e-20 87.4
MsaG005463 MtrunA17_Chr3g0097101 52.703 74 35 0 3 76 11 84 2.24e-20 85.5
MsaG005463 MtrunA17_Chr8g0351041 50.000 78 39 0 10 87 3 80 3.49e-20 83.2
MsaG005463 MtrunA17_Chr5g0427401 52.941 68 32 0 9 76 2 69 1.13e-19 83.2
MsaG005463 MtrunA17_Chr2g0279821 51.471 68 33 0 9 76 2 69 1.31e-19 83.2
MsaG005463 MtrunA17_Chr4g0049901 59.091 66 27 0 10 75 29 94 1.50e-19 83.2
MsaG005463 MtrunA17_Chr8g0351031 50.000 78 39 0 10 87 3 80 1.96e-19 82.4
MsaG005463 MtrunA17_Chr7g0246431 53.731 67 31 0 10 76 3 69 2.09e-19 82.0
MsaG005463 MtrunA17_Chr2g0284911 39.474 114 68 1 9 122 17 129 2.71e-19 82.8
MsaG005463 MtrunA17_Chr8g0380021 52.941 68 32 0 9 76 18 85 4.66e-19 82.0
MsaG005463 MtrunA17_Chr5g0412271 31.373 153 76 4 10 156 3 132 8.15e-19 80.9
MsaG005463 MtrunA17_Chr8g0345001 33.544 158 92 3 8 159 17 167 9.28e-19 79.7
MsaG005463 MtrunA17_Chr5g0412461 32.886 149 79 4 10 156 3 132 1.39e-18 80.5
MsaG005463 MtrunA17_Chr1g0173161 57.377 61 26 0 9 69 2 62 1.46e-18 76.6
MsaG005463 MtrunA17_Chr6g0455511 52.174 69 32 1 9 76 2 70 1.97e-18 80.5
MsaG005463 MtrunA17_Chr6g0474371 50.704 71 32 2 7 76 2 70 2.43e-18 79.0
MsaG005463 MtrunA17_Chr7g0220111 53.521 71 30 2 7 76 2 70 2.76e-18 80.1
MsaG005463 MtrunA17_Chr4g0061691 47.826 69 35 1 9 76 2 70 3.98e-18 79.3
MsaG005463 MtrunA17_Chr4g0020221 51.471 68 33 0 9 76 2 69 4.72e-18 79.3
MsaG005463 MtrunA17_Chr1g0204111 51.471 68 33 0 9 76 18 85 5.89e-18 79.3
MsaG005463 MtrunA17_Chr7g0246381 53.731 67 26 1 9 70 2 68 6.30e-18 74.3
MsaG005463 MtrunA17_Chr5g0420091 50.725 69 33 1 9 76 2 70 8.72e-18 77.8
MsaG005463 MtrunA17_Chr5g0411691 50.000 68 34 0 9 76 2 69 1.05e-17 78.2
MsaG005463 MtrunA17_Chr3g0125241 50.000 70 33 1 9 76 27 96 1.68e-17 77.0
MsaG005463 MtrunA17_Chr8g0377561 57.143 56 24 0 9 64 2 57 4.21e-17 73.2
MsaG005463 MtrunA17_Chr4g0049541 43.529 85 45 1 9 90 2 86 4.80e-17 76.3
MsaG005463 MtrunA17_Chr4g0061671 55.932 59 24 1 7 65 2 58 4.84e-17 75.5
MsaG005463 MtrunA17_Chr5g0404951 52.857 70 31 1 9 76 2 71 6.45e-17 75.9
MsaG005463 MtrunA17_Chr8g0366231 47.826 69 35 1 9 76 2 70 1.14e-16 75.5
MsaG005463 MtrunA17_Chr3g0122251 41.748 103 55 2 9 110 2 100 1.52e-16 75.1
MsaG005463 MtrunA17_Chr5g0425191 62.264 53 20 0 9 61 2 54 1.68e-16 71.6
MsaG005463 MtrunA17_Chr2g0308251 47.826 69 36 0 9 77 2 70 2.31e-16 70.9
MsaG005463 MtrunA17_Chr7g0220121 44.928 69 37 1 9 76 2 70 2.84e-16 74.7
MsaG005463 MtrunA17_Chr4g0044071 57.895 57 24 0 9 65 2 58 3.95e-16 71.2
MsaG005463 MtrunA17_Chr1g0164791 50.000 70 33 1 9 76 2 71 4.64e-16 73.6
MsaG005463 MtrunA17_Chr3g0142191 35.833 120 65 2 9 117 2 120 5.73e-16 73.2
MsaG005463 MtrunA17_Chr5g0420081 44.928 69 37 1 9 76 2 70 6.80e-16 73.2
MsaG005463 MtrunA17_Chr1g0159661 45.714 70 36 1 9 76 2 71 1.13e-15 71.6
MsaG005463 MtrunA17_Chr4g0018421 31.016 187 102 6 9 186 2 170 1.23e-15 72.0
MsaG005463 MtrunA17_Chr5g0427921 50.877 57 28 0 9 65 2 58 6.78e-15 66.2
MsaG005463 MtrunA17_Chr3g0093131 32.867 143 79 4 26 159 36 170 2.91e-14 68.2
MsaG005463 MtrunA17_Chr1g0166611 37.000 100 54 2 20 118 17 108 1.08e-13 65.1
MsaG005463 MtrunA17_Chr4g0060841 28.571 168 106 6 9 164 2 167 1.67e-13 67.8
MsaG005463 MtrunA17_Chr4g0025531 31.902 163 98 3 1 163 1 150 3.77e-13 65.9
MsaG005463 MtrunA17_Chr5g0417661 44.444 72 34 1 9 80 57 122 4.05e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005463 AT5G60440.1 52.973 185 80 4 4 181 2 186 4.77e-59 187
MsaG005463 AT2G24840.1 44.221 199 82 5 9 184 63 255 1.40e-44 149
MsaG005463 AT1G01530.1 42.391 184 98 4 4 183 2 181 3.29e-40 137
MsaG005463 AT4G36590.1 44.767 172 85 4 4 167 2 171 8.61e-40 136
MsaG005463 AT1G65360.1 40.984 183 101 4 4 181 2 182 1.77e-38 132
MsaG005463 AT3G04100.1 32.632 190 116 3 2 183 7 192 2.82e-28 105
MsaG005463 AT2G34440.1 37.162 148 91 2 9 156 2 147 3.92e-28 104
MsaG005463 AT3G66656.1 39.370 127 73 1 9 131 2 128 1.23e-24 95.5
MsaG005463 AT4G09960.2 40.580 138 68 5 9 137 2 134 5.21e-23 92.0
MsaG005463 AT4G09960.6 40.580 138 68 5 9 137 3 135 6.46e-23 92.0
MsaG005463 AT4G09960.1 40.580 138 68 5 9 137 2 134 6.74e-23 92.0
MsaG005463 AT4G09960.5 40.580 138 68 5 9 137 12 144 9.12e-23 92.0
MsaG005463 AT1G72350.1 32.370 173 77 4 9 174 43 182 1.30e-22 91.3
MsaG005463 AT4G09960.3 40.845 142 68 6 5 137 26 160 1.81e-22 91.7
MsaG005463 AT1G28460.1 35.976 164 91 5 5 161 4 160 2.51e-22 89.4
MsaG005463 AT2G45660.2 55.882 68 30 0 10 77 3 70 4.35e-22 88.2
MsaG005463 AT4G09960.4 41.007 139 66 6 5 134 95 226 7.16e-22 91.3
MsaG005463 AT2G45660.1 55.882 68 30 0 10 77 3 70 2.30e-21 87.8
MsaG005463 AT2G45650.1 55.882 68 30 0 9 76 2 69 4.16e-21 87.8
MsaG005463 AT4G24540.1 35.811 148 78 4 9 156 2 132 1.04e-20 86.3
MsaG005463 AT1G29962.1 29.240 171 115 2 5 169 4 174 1.68e-20 84.7
MsaG005463 AT3G57230.2 50.000 68 34 0 9 76 2 69 3.32e-20 82.8
MsaG005463 AT5G10140.2 56.522 69 29 1 9 76 2 70 4.91e-20 83.2
MsaG005463 AT4G18960.1 41.379 116 60 3 2 112 11 123 5.78e-20 84.7
MsaG005463 AT2G22540.3 35.374 147 78 4 10 156 3 132 6.58e-20 84.3
MsaG005463 AT2G22540.1 35.374 147 78 4 10 156 3 132 6.58e-20 84.3
MsaG005463 AT5G62165.17 53.731 67 31 0 10 76 3 69 7.25e-20 82.4
MsaG005463 AT5G62165.12 53.731 67 31 0 10 76 3 69 7.25e-20 82.4
MsaG005463 AT5G62165.11 53.731 67 31 0 10 76 3 69 7.25e-20 82.4
MsaG005463 AT4G22950.2 55.224 67 30 0 10 76 3 69 7.49e-20 82.8
MsaG005463 AT5G10140.3 56.522 69 29 1 9 76 2 70 8.82e-20 82.8
MsaG005463 AT5G10140.4 56.522 69 29 1 9 76 2 70 9.17e-20 82.8
MsaG005463 AT5G62165.14 45.455 88 44 1 10 93 3 90 9.54e-20 80.5
MsaG005463 AT5G62165.6 53.731 67 31 0 10 76 3 69 1.03e-19 82.0
MsaG005463 AT5G62165.9 53.731 67 31 0 10 76 3 69 1.03e-19 82.0
MsaG005463 AT5G62165.7 53.731 67 31 0 10 76 3 69 1.03e-19 82.0
MsaG005463 AT5G62165.8 53.731 67 31 0 10 76 3 69 1.03e-19 82.0
MsaG005463 AT5G62165.13 53.731 67 31 0 10 76 3 69 1.03e-19 82.0
MsaG005463 AT5G10140.1 56.522 69 29 1 9 76 2 70 1.09e-19 82.8
MsaG005463 AT3G57230.1 50.000 68 34 0 9 76 2 69 1.84e-19 83.2
MsaG005463 AT3G57230.4 50.000 68 34 0 9 76 2 69 1.84e-19 83.2
MsaG005463 AT3G57390.3 52.941 68 32 0 9 76 2 69 2.22e-19 82.8
MsaG005463 AT2G42830.1 52.000 75 34 1 2 76 12 84 2.54e-19 83.2
MsaG005463 AT5G51870.2 55.224 67 30 0 10 76 3 69 2.64e-19 81.3
MsaG005463 AT2G42830.2 52.000 75 34 1 2 76 12 84 2.68e-19 83.2
MsaG005463 AT5G51870.1 55.224 67 30 0 10 76 3 69 3.82e-19 81.6
MsaG005463 AT4G22950.3 55.224 67 30 0 10 76 3 69 4.07e-19 82.0
MsaG005463 AT4G22950.1 55.224 67 30 0 10 76 3 69 4.07e-19 82.0
MsaG005463 AT5G62165.3 53.731 67 31 0 10 76 3 69 4.59e-19 81.6
MsaG005463 AT5G62165.1 53.731 67 31 0 10 76 3 69 4.59e-19 81.6
MsaG005463 AT5G62165.2 53.731 67 31 0 10 76 3 69 4.59e-19 81.6
MsaG005463 AT5G62165.10 53.731 67 31 0 10 76 3 69 4.61e-19 81.3
MsaG005463 AT5G62165.4 53.731 67 31 0 10 76 3 69 4.61e-19 81.3
MsaG005463 AT3G57390.1 52.941 68 32 0 9 76 2 69 4.80e-19 82.4
MsaG005463 AT3G58780.1 52.000 75 34 1 2 76 12 84 5.30e-19 82.0
MsaG005463 AT3G58780.5 52.000 75 34 1 2 76 18 90 6.08e-19 82.0
MsaG005463 AT5G51870.5 55.224 67 30 0 10 76 26 92 6.87e-19 80.9
MsaG005463 AT5G51870.4 55.224 67 30 0 10 76 3 69 7.45e-19 81.3
MsaG005463 AT3G58780.4 52.000 75 34 1 2 76 12 84 8.81e-19 82.0
MsaG005463 AT5G51870.3 55.224 67 30 0 10 76 13 79 9.70e-19 81.3
MsaG005463 AT4G37940.1 50.000 68 34 0 9 76 2 69 1.14e-18 80.9
MsaG005463 AT4G37940.4 50.000 68 34 0 9 76 2 69 1.22e-18 80.5
MsaG005463 AT1G22130.1 38.136 118 71 2 9 125 2 118 1.76e-18 82.0
MsaG005463 AT4G37940.3 50.000 68 34 0 9 76 2 69 1.88e-18 79.3
MsaG005463 AT5G65050.2 52.174 69 32 1 9 76 2 70 3.51e-18 78.6
MsaG005463 AT5G13790.1 52.941 68 32 0 9 76 2 69 3.69e-18 80.1
MsaG005463 AT4G11880.2 52.941 68 31 1 10 76 3 70 3.74e-18 78.6
MsaG005463 AT4G11880.3 52.941 68 31 1 10 76 3 70 3.74e-18 78.6
MsaG005463 AT5G13790.2 52.941 68 32 0 9 76 2 69 3.81e-18 80.5
MsaG005463 AT1G77980.1 54.167 72 32 1 9 79 2 73 8.36e-18 80.1
MsaG005463 AT4G11880.4 52.941 68 31 1 10 76 3 70 8.83e-18 78.6
MsaG005463 AT4G11880.1 52.941 68 31 1 10 76 3 70 8.83e-18 78.6
MsaG005463 AT5G15800.1 52.174 69 32 1 9 76 2 70 8.85e-18 79.0
MsaG005463 AT5G20240.2 49.315 73 35 1 9 79 2 74 9.52e-18 76.6
MsaG005463 AT5G20240.1 49.315 73 35 1 9 79 2 74 1.25e-17 77.8
MsaG005463 AT5G65050.5 52.174 69 32 1 9 76 2 70 1.32e-17 77.0
MsaG005463 AT5G65050.3 52.174 69 32 1 9 76 2 70 1.35e-17 77.4
MsaG005463 AT5G65050.1 52.174 69 32 1 9 76 2 70 1.47e-17 77.0
MsaG005463 AT5G15800.2 52.174 69 32 1 9 76 2 70 1.63e-17 78.6
MsaG005463 AT3G30260.1 47.826 69 35 1 9 76 2 70 2.06e-17 77.8
MsaG005463 AT5G51860.2 52.239 67 32 0 10 76 3 69 2.37e-17 77.0
MsaG005463 AT1G26310.1 50.704 71 32 2 7 76 2 70 2.68e-17 77.8
MsaG005463 AT1G28450.1 33.136 169 97 6 5 162 4 167 2.69e-17 76.3
MsaG005463 AT2G22540.2 34.694 147 74 5 10 156 3 127 2.72e-17 77.4
MsaG005463 AT5G51860.1 52.239 67 32 0 10 76 3 69 2.98e-17 76.6
MsaG005463 AT3G54340.1 33.083 133 75 4 9 128 2 133 3.09e-17 77.0
MsaG005463 AT2G03710.3 51.429 70 32 2 9 76 2 71 4.21e-17 75.9
MsaG005463 AT3G02310.2 50.725 69 33 1 9 76 2 70 4.45e-17 76.3
MsaG005463 AT1G69120.2 50.704 71 32 2 7 76 2 70 5.41e-17 76.6
MsaG005463 AT1G77950.3 50.000 76 36 2 9 83 2 76 7.16e-17 76.6
MsaG005463 AT1G77950.2 50.000 76 36 2 9 83 2 76 7.16e-17 76.6
MsaG005463 AT1G77950.1 50.000 76 36 2 9 83 2 76 7.16e-17 76.6
MsaG005463 AT1G77950.4 50.000 76 36 2 9 83 2 76 7.16e-17 76.6
MsaG005463 AT5G65060.3 50.725 69 33 1 9 76 2 70 8.02e-17 75.1
MsaG005463 AT3G61120.1 48.529 68 35 0 9 76 2 69 8.32e-17 76.3
MsaG005463 AT3G58780.2 55.385 65 27 1 2 66 12 74 9.58e-17 75.9
MsaG005463 AT5G60910.1 47.826 69 35 1 9 76 2 70 1.09e-16 75.9
MsaG005463 AT5G65060.2 50.725 69 33 1 9 76 2 70 1.32e-16 74.3
MsaG005463 AT5G65070.4 44.928 69 37 1 9 76 2 70 1.36e-16 73.6
MsaG005463 AT3G58780.3 55.385 65 27 1 2 66 12 74 1.42e-16 76.3
MsaG005463 AT5G65060.1 50.725 69 33 1 9 76 2 70 1.47e-16 74.7
MsaG005463 AT2G14210.1 46.377 69 36 1 9 76 2 70 1.50e-16 75.5
MsaG005463 AT1G69120.1 50.704 71 32 2 7 76 2 70 1.73e-16 75.5
MsaG005463 AT5G23260.4 46.392 97 44 3 2 90 9 105 1.96e-16 75.5
MsaG005463 AT2G14210.2 46.377 69 36 1 9 76 2 70 1.99e-16 75.1
MsaG005463 AT5G23260.1 46.392 97 44 3 2 90 9 105 2.02e-16 75.5
MsaG005463 AT3G02310.1 50.725 69 33 1 9 76 2 70 2.04e-16 75.1
MsaG005463 AT2G03710.1 51.429 70 32 2 9 76 2 71 2.47e-16 75.1
MsaG005463 AT2G03710.2 51.429 70 32 2 9 76 2 71 2.64e-16 75.1
MsaG005463 AT5G23260.2 47.727 88 40 2 9 90 2 89 2.94e-16 74.7
MsaG005463 AT5G65070.1 44.928 69 37 1 9 76 2 70 2.99e-16 73.9
MsaG005463 AT1G24260.1 57.143 56 24 0 9 64 2 57 3.17e-16 74.7
MsaG005463 AT1G24260.2 57.143 56 24 0 9 64 2 57 3.21e-16 74.7
MsaG005463 AT1G24260.3 57.143 56 24 0 9 64 2 57 3.26e-16 74.3
MsaG005463 AT5G23260.3 47.727 88 40 2 9 90 2 89 3.31e-16 74.3
MsaG005463 AT1G47760.1 37.255 102 50 2 9 110 2 89 5.70e-16 72.8
MsaG005463 AT5G65070.2 44.928 69 37 1 9 76 2 70 8.40e-16 73.2
MsaG005463 AT5G65070.5 44.928 69 37 1 9 76 2 70 9.64e-16 72.8
MsaG005463 AT1G17310.1 53.165 79 35 1 8 86 47 123 1.67e-15 72.4
MsaG005463 AT1G17310.2 53.165 79 35 1 8 86 58 134 2.11e-15 72.0
MsaG005463 AT2G22630.1 45.588 68 37 0 9 76 2 69 2.30e-15 72.0
MsaG005463 AT2G22630.2 45.588 68 37 0 9 76 2 69 2.30e-15 72.0
MsaG005463 AT1G71692.1 47.826 69 35 1 10 77 3 71 2.93e-15 71.6
MsaG005463 AT5G65070.3 50.877 57 28 0 9 65 2 58 6.22e-15 70.9
MsaG005463 AT5G65080.3 44.928 69 37 1 9 76 9 77 1.51e-14 69.3
MsaG005463 AT1G18750.4 41.558 77 43 1 9 83 2 78 1.98e-14 70.9
MsaG005463 AT1G18750.1 41.558 77 43 1 9 83 2 78 2.24e-14 70.9
MsaG005463 AT1G18750.3 41.558 77 43 1 9 83 2 78 2.40e-14 70.9
MsaG005463 AT4G37435.1 30.128 156 79 4 9 134 2 157 2.85e-14 68.2
MsaG005463 AT5G65080.2 51.852 54 26 0 9 62 9 62 8.90e-14 67.4
MsaG005463 AT1G77080.11 53.623 69 31 1 9 76 2 70 2.31e-13 65.9
MsaG005463 AT1G77080.5 53.623 69 31 1 9 76 2 70 2.89e-13 65.5
MsaG005463 AT1G77080.4 53.623 69 31 1 9 76 2 70 8.54e-13 64.7
MsaG005463 AT5G49490.1 39.326 89 47 2 4 85 40 128 1.06e-12 65.5
MsaG005463 AT2G03060.2 29.412 170 95 8 9 159 2 165 2.17e-12 65.1
MsaG005463 AT2G03060.3 29.412 170 95 8 9 159 2 165 2.45e-12 65.1
MsaG005463 AT2G03060.7 29.412 170 95 8 9 159 2 165 2.45e-12 65.1
MsaG005463 AT2G03060.1 29.412 170 95 8 9 159 2 165 2.45e-12 65.1
MsaG005463 AT1G77080.8 53.623 69 31 1 9 76 2 70 2.58e-12 63.5
MsaG005463 AT1G69540.1 40.789 76 44 1 9 83 2 77 4.78e-12 63.9
MsaG005463 AT1G69540.2 40.789 76 44 1 9 83 2 77 6.38e-12 63.9
MsaG005463 AT5G49420.1 38.043 92 50 2 5 89 3 94 8.47e-12 63.2
MsaG005463 AT1G46408.1 44.737 76 38 2 7 78 2 77 1.67e-11 62.0
MsaG005463 AT2G26320.1 39.726 73 42 1 9 79 18 90 3.32e-11 58.2

Find 40 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1:+81716436 MsaT005463.1:CDS
ATTTCAGATTGTTGAGCATT+TGG 0.323276 1:-81716563 None:intergenic
GTTGCATGGTGCCATCGTTT+TGG 0.342981 1:-81716244 None:intergenic
TCCGGTTGATGGAATGAATA+TGG 0.345674 1:+81716412 MsaT005463.1:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.354466 1:+81716401 MsaT005463.1:CDS
CCTCTGTTTCCTTGAGCAAA+TGG 0.356090 1:-81716370 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.378999 1:-81716342 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1:-81716198 None:intergenic
AGCATTGAGTTCACGAACTT+TGG 0.407921 1:-81716288 None:intergenic
CTTTCTCAAAGCGTCGTAAC+GGG 0.409500 1:+81716078 MsaT005463.1:CDS
TCCATATTCATTCCATCAAC+CGG 0.418130 1:-81716413 None:intergenic
TCTATGACCGTATCAAGATT+GGG 0.446553 1:-81716197 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.448173 1:+81716116 MsaT005463.1:CDS
AGGAAACAGAGGCTAAGTTT+TGG 0.455034 1:+81716381 MsaT005463.1:CDS
CTGGATACCGAGAAGAAGAT+TGG 0.467338 1:+81716335 MsaT005463.1:CDS
GCCTTTCCTTGCACTCGACA+TGG 0.477331 1:-81715997 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.477675 1:-81716553 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.494828 1:-81716129 None:intergenic
ACTTTCTCAAAGCGTCGTAA+CGG 0.503300 1:+81716077 MsaT005463.1:CDS
ACAAAGGGTGCAAAGCTCAC+TGG 0.546172 1:-81716114 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1:+81716190 MsaT005463.1:CDS
TTTGAGCCATGTCGAGTGCA+AGG 0.559355 1:+81715991 None:intergenic
CGAGAAGAAGATTGGCGATG+AGG 0.580787 1:+81716343 MsaT005463.1:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1:-81716186 None:intergenic
TCGTAACGGGCTCTTCAAGA+AGG 0.590251 1:+81716091 MsaT005463.1:CDS
CTAGTTGTATTCTCGCCTAG+TGG 0.592221 1:+81716152 MsaT005463.1:CDS
TGAGGTGAGCCATTTGCTCA+AGG 0.593970 1:+81716361 MsaT005463.1:CDS
TCGAGTGCAAGGAAAGGCCG+AGG 0.595815 1:+81716002 MsaT005463.1:CDS
TGTATTCTCGCCTAGTGGAA+AGG 0.608216 1:+81716157 MsaT005463.1:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1:-81716537 None:intergenic
GTTCACGAACTTTGGCATTG+CGG 0.613984 1:-81716280 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.621182 1:-81716130 None:intergenic
TGGCACCATGCAACTCATTG+AGG 0.627757 1:+81716253 MsaT005463.1:CDS
AAGGAAAATACCTTTCCACT+AGG 0.627897 1:-81716167 None:intergenic
GCCATGTCGAGTGCAAGGAA+AGG 0.640958 1:+81715996 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1:-81716196 None:intergenic
CCATTTGCTCAAGGAAACAG+AGG 0.656067 1:+81716370 MsaT005463.1:CDS
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 1:-81716258 None:intergenic
CTCGTCCCAACCCAAAACGA+TGG 0.674809 1:+81716233 MsaT005463.1:CDS
TTGGGACGAGAGAAAGATAG+CGG 0.705690 1:-81716220 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 81715999 81716917 81715999 ID=MsaG005463
Chr1 mRNA 81715999 81716917 81715999 ID=MsaT005463.1;Parent=MsaG005463
Chr1 exon 81715999 81716585 81715999 ID=MsaT005463.1.exon1;Parent=MsaT005463.1
Chr1 CDS 81715999 81716585 81715999 ID=cds.MsaT005463.1;Parent=MsaT005463.1
Chr1 exon 81716914 81716917 81716914 ID=MsaT005463.1.exon2;Parent=MsaT005463.1
Chr1 CDS 81716914 81716917 81716914 ID=cds.MsaT005463.1;Parent=MsaT005463.1
Gene Sequence

>MsaT005463.1

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATTAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGTCGTAACGGGCTCTTCAAGAAGGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTCGTCCCAACCCAAAACGATGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAAAGTTCGTGAACTCAATGCTCAGATGACTCAAATCAAAAACACGCTGGATACCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGAATGAATATGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCAAACTCTTCCATTTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATCTAA
Protein sequence

>MsaT005463.1

MSSARKGRGRQKIEMKKISNESNLQVTFSKRRNGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPTQNDGTMQLIEAHRNAKVRELNAQMTQIKNTLDTEKKIGDEVSHLLKETEAKFWWACPVDGMNMDQLELFKKALEELKKLLIQHATTQTLPFFVGNASSSNIYLHHQPNAQQSEI*