AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005464

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005464 MtrunA17_Chr1g0208561 92.893 197 14 0 1 197 1 197 1.71e-139 389
MsaG005464 MtrunA17_Chr3g0089141 92.386 197 15 0 1 197 1 197 9.66e-138 384
MsaG005464 MtrunA17_Chr2g0325971 87.065 201 26 0 1 201 1 201 2.02e-130 365
MsaG005464 MtrunA17_Chr1g0208581 86.070 201 28 0 1 201 1 201 4.64e-130 365
MsaG005464 MtrunA17_Chr1g0206721 77.941 204 37 1 1 196 1 204 1.44e-113 323
MsaG005464 MtrunA17_Chr8g0355091 76.098 205 41 1 1 197 1 205 1.38e-110 316
MsaG005464 MtrunA17_Chr2g0292791 72.727 209 49 1 1 201 1 209 4.99e-108 309
MsaG005464 MtrunA17_Chr1g0206701 73.659 205 46 1 1 197 1 205 2.70e-107 307
MsaG005464 MtrunA17_Chr1g0149391 71.292 209 52 1 1 201 1 209 3.10e-106 305
MsaG005464 MtrunA17_Chr3g0099421 71.292 209 52 1 1 201 26 234 9.52e-106 304
MsaG005464 MtrunA17_Chr2g0300441 69.756 205 54 1 1 197 1 205 1.15e-99 288
MsaG005464 MtrunA17_Chr1g0206991 74.725 182 38 1 1 174 1 182 2.34e-95 275
MsaG005464 MtrunA17_Chr1g0187361 66.341 205 61 1 1 197 1 205 1.86e-94 275
MsaG005464 MtrunA17_Chr3g0099411 68.780 205 37 3 1 197 1 186 8.24e-93 270
MsaG005464 MtrunA17_Chr1g0188671 64.878 205 64 1 1 197 39 243 4.87e-92 270
MsaG005464 MtrunA17_Chr5g0419601 64.878 205 64 1 1 197 1 205 2.03e-90 265
MsaG005464 MtrunA17_Chr1g0206691 68.085 188 52 1 18 197 1 188 1.39e-89 262
MsaG005464 MtrunA17_Chr2g0317451 63.184 201 66 1 1 193 1 201 4.10e-89 261
MsaG005464 MtrunA17_Chr2g0317481 63.184 201 66 1 1 193 1 201 4.33e-89 261
MsaG005464 MtrunA17_Chr5g0422421 64.390 205 65 2 1 197 1 205 3.57e-88 259
MsaG005464 MtrunA17_Chr5g0422941 62.687 201 67 1 1 193 1 201 1.48e-86 255
MsaG005464 MtrunA17_Chr7g0238991 64.398 191 59 2 16 197 27 217 1.44e-80 240
MsaG005464 MtrunA17_Chr2g0300421 85.075 134 20 0 1 134 1 134 3.66e-79 234
MsaG005464 MtrunA17_Chr3g0089151 71.970 132 37 0 1 132 1 132 3.99e-66 199
MsaG005464 MtrunA17_Chr3g0119901 57.237 152 65 0 9 160 9 160 8.83e-63 194
MsaG005464 MtrunA17_Chr3g0085241 55.696 158 70 0 3 160 35 192 2.01e-62 194
MsaG005464 MtrunA17_Chr3g0111931 62.745 102 38 0 21 122 2 103 1.26e-41 136
MsaG005464 MtrunA17_Chr8g0379021 43.030 165 84 2 5 166 8 165 2.08e-40 135
MsaG005464 MtrunA17_Chr2g0333981 39.394 165 90 2 5 166 8 165 6.08e-36 124
MsaG005464 MtrunA17_Chr1g0187351 80.303 66 13 0 18 83 1 66 1.61e-32 112
MsaG005464 MtrunA17_Chr4g0018951 41.040 173 90 3 5 177 8 168 3.09e-31 112
MsaG005464 MtrunA17_Chr3g0111841 79.661 59 12 0 15 73 2 60 1.56e-28 102
MsaG005464 MtrunA17_Chr4g0071601 37.714 175 89 4 5 166 8 175 3.11e-26 99.8
MsaG005464 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 1.88e-24 94.7
MsaG005464 MtrunA17_Chr1g0175601 41.071 112 63 2 9 119 2 111 3.81e-24 94.0
MsaG005464 MtrunA17_Chr1g0175611 51.948 77 37 0 9 85 2 78 3.23e-23 91.3
MsaG005464 MtrunA17_Chr8g0376821 56.522 69 30 0 9 77 2 70 3.49e-23 91.7
MsaG005464 MtrunA17_Chr1g0169761 56.522 69 30 0 9 77 2 70 5.26e-23 90.9
MsaG005464 MtrunA17_Chr4g0074101 40.517 116 54 3 9 109 2 117 6.80e-23 91.3
MsaG005464 MtrunA17_Chr4g0052081 43.396 106 59 1 9 113 2 107 3.36e-22 89.0
MsaG005464 MtrunA17_Chr8g0357771 39.683 126 71 2 9 131 2 125 9.26e-22 87.8
MsaG005464 MtrunA17_Chr4g0052061 39.623 106 62 1 9 114 2 105 2.06e-21 86.3
MsaG005464 MtrunA17_Chr3g0111831 63.934 61 22 0 16 76 11 71 2.20e-21 84.0
MsaG005464 MtrunA17_Chr8g0356071 37.692 130 73 3 9 135 2 126 5.67e-21 85.5
MsaG005464 MtrunA17_Chr3g0077501 51.471 68 33 0 9 76 2 69 5.84e-20 84.0
MsaG005464 MtrunA17_Chr5g0427401 33.333 159 81 4 9 164 2 138 1.31e-19 83.2
MsaG005464 MtrunA17_Chr4g0057151 52.239 67 32 0 10 76 3 69 3.26e-19 81.6
MsaG005464 MtrunA17_Chr3g0134451 44.118 102 54 3 9 109 2 101 6.07e-19 83.2
MsaG005464 MtrunA17_Chr3g0097101 48.649 74 38 0 3 76 11 84 1.04e-18 81.3
MsaG005464 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 1.16e-18 80.9
MsaG005464 MtrunA17_Chr8g0351051 48.148 81 38 2 7 85 2 80 2.10e-18 80.5
MsaG005464 MtrunA17_Chr8g0351041 46.154 78 42 0 10 87 3 80 2.75e-18 78.2
MsaG005464 MtrunA17_Chr6g0474371 49.296 71 33 2 7 76 2 70 5.67e-18 78.2
MsaG005464 MtrunA17_Chr2g0279821 47.059 68 36 0 9 76 2 69 7.13e-18 79.0
MsaG005464 MtrunA17_Chr5g0412271 32.258 155 74 6 9 156 2 132 7.86e-18 78.6
MsaG005464 MtrunA17_Chr8g0345001 32.911 158 93 3 8 159 17 167 8.13e-18 77.4
MsaG005464 MtrunA17_Chr4g0061691 47.887 71 34 2 7 76 2 70 9.13e-18 78.6
MsaG005464 MtrunA17_Chr1g0204111 50.000 68 34 0 9 76 18 85 1.10e-17 78.6
MsaG005464 MtrunA17_Chr5g0412461 47.059 68 36 0 9 76 2 69 1.11e-17 78.2
MsaG005464 MtrunA17_Chr7g0246431 49.254 67 34 0 10 76 3 69 1.26e-17 77.8
MsaG005464 MtrunA17_Chr8g0351031 49.275 69 35 0 10 78 3 71 1.35e-17 77.8
MsaG005464 MtrunA17_Chr4g0020221 50.000 68 34 0 9 76 2 69 1.50e-17 78.2
MsaG005464 MtrunA17_Chr8g0380021 48.529 68 35 0 9 76 18 85 1.99e-17 77.8
MsaG005464 MtrunA17_Chr2g0284911 48.529 68 35 0 9 76 17 84 4.68e-17 77.0
MsaG005464 MtrunA17_Chr1g0173161 52.459 61 29 0 9 69 2 62 8.37e-17 72.0
MsaG005464 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 8.51e-17 75.9
MsaG005464 MtrunA17_Chr6g0455511 47.826 69 35 1 9 76 2 70 9.22e-17 76.3
MsaG005464 MtrunA17_Chr7g0220111 49.296 71 33 2 7 76 2 70 9.56e-17 75.9
MsaG005464 MtrunA17_Chr4g0049541 36.066 122 69 4 9 126 2 118 2.05e-16 74.7
MsaG005464 MtrunA17_Chr3g0125241 48.571 70 34 1 9 76 27 96 2.27e-16 74.3
MsaG005464 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 2.68e-16 74.3
MsaG005464 MtrunA17_Chr8g0366231 44.928 69 37 1 9 76 2 70 3.37e-16 74.3
MsaG005464 MtrunA17_Chr7g0246381 49.254 67 29 1 9 70 2 68 4.53e-16 70.1
MsaG005464 MtrunA17_Chr4g0061671 52.542 59 26 1 7 65 2 58 5.21e-16 72.8
MsaG005464 MtrunA17_Chr1g0159661 47.143 70 35 1 9 76 2 71 6.40e-16 72.4
MsaG005464 MtrunA17_Chr5g0404951 51.429 70 32 1 9 76 2 71 6.69e-16 73.6
MsaG005464 MtrunA17_Chr2g0308251 46.377 69 37 0 9 77 2 70 7.71e-16 69.7
MsaG005464 MtrunA17_Chr7g0220121 42.029 69 39 1 9 76 2 70 1.15e-15 73.2
MsaG005464 MtrunA17_Chr1g0164791 47.143 70 35 1 9 76 2 71 1.93e-15 72.0
MsaG005464 MtrunA17_Chr8g0377561 51.786 56 27 0 9 64 2 57 2.09e-15 68.9
MsaG005464 MtrunA17_Chr5g0420081 42.029 69 39 1 9 76 2 70 2.55e-15 72.0
MsaG005464 MtrunA17_Chr3g0122251 53.571 56 26 0 9 64 2 57 7.77e-15 70.9
MsaG005464 MtrunA17_Chr5g0425191 56.604 53 23 0 9 61 2 54 1.13e-14 67.0
MsaG005464 MtrunA17_Chr4g0044071 52.632 57 27 0 9 65 2 58 1.66e-14 67.0
MsaG005464 MtrunA17_Chr4g0060841 29.143 175 110 6 9 171 2 174 1.77e-14 70.9
MsaG005464 MtrunA17_Chr3g0142191 44.286 70 37 1 9 76 2 71 3.27e-14 68.9
MsaG005464 MtrunA17_Chr3g0093131 34.000 150 68 6 26 159 36 170 5.83e-14 67.4
MsaG005464 MtrunA17_Chr5g0427921 45.614 57 31 0 9 65 2 58 1.29e-13 63.2
MsaG005464 MtrunA17_Chr5g0417661 44.444 72 34 1 9 80 57 122 1.18e-12 62.4
MsaG005464 MtrunA17_Chr4g0025531 31.210 157 91 3 1 155 1 142 1.50e-12 64.3
MsaG005464 MtrunA17_Chr4g0018421 29.730 185 107 7 9 186 2 170 1.93e-12 63.5
MsaG005464 MtrunA17_Chr1g0166611 35.000 100 56 2 20 118 17 108 4.25e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005464 AT5G60440.1 54.348 184 77 3 5 181 3 186 1.02e-59 189
MsaG005464 AT2G24840.1 48.193 166 75 4 9 168 63 223 4.87e-44 148
MsaG005464 AT1G65360.1 40.291 206 107 5 5 205 3 197 9.72e-41 138
MsaG005464 AT1G01530.1 41.463 205 105 5 4 204 2 195 3.46e-40 137
MsaG005464 AT4G36590.1 44.444 171 85 4 5 167 3 171 3.12e-39 135
MsaG005464 AT2G34440.1 37.162 148 91 2 9 156 2 147 7.19e-28 103
MsaG005464 AT3G04100.1 34.337 166 97 3 2 159 7 168 1.20e-26 101
MsaG005464 AT3G66656.1 39.370 127 73 1 9 131 2 128 2.48e-24 94.7
MsaG005464 AT1G72350.1 34.211 152 67 4 9 160 43 161 1.45e-21 89.0
MsaG005464 AT4G24540.1 36.486 148 77 4 9 156 2 132 1.52e-20 85.9
MsaG005464 AT4G09960.2 37.500 136 75 4 9 137 2 134 1.55e-20 85.9
MsaG005464 AT1G28460.1 30.178 169 113 3 5 169 4 171 1.64e-20 85.1
MsaG005464 AT4G09960.1 37.500 136 75 4 9 137 2 134 2.07e-20 85.9
MsaG005464 AT4G09960.6 37.500 136 75 4 9 137 3 135 2.15e-20 85.9
MsaG005464 AT4G09960.5 37.500 136 75 4 9 137 12 144 3.06e-20 85.5
MsaG005464 AT2G45660.2 51.471 68 33 0 10 77 3 70 3.23e-20 83.6
MsaG005464 AT1G29962.1 29.240 171 115 2 5 169 4 174 3.40e-20 84.3
MsaG005464 AT4G09960.3 37.500 136 75 4 9 137 28 160 4.32e-20 85.5
MsaG005464 AT2G45660.1 51.471 68 33 0 10 77 3 70 1.30e-19 83.6
MsaG005464 AT4G09960.4 37.594 133 73 4 9 134 97 226 1.34e-19 85.5
MsaG005464 AT2G45650.1 51.471 68 33 0 9 76 2 69 2.10e-19 83.6
MsaG005464 AT5G51870.2 53.731 67 31 0 10 76 3 69 9.37e-19 80.1
MsaG005464 AT5G51870.1 53.731 67 31 0 10 76 3 69 1.48e-18 80.5
MsaG005464 AT2G22540.3 50.000 68 34 0 9 76 2 69 1.56e-18 80.9
MsaG005464 AT2G22540.1 50.000 68 34 0 9 76 2 69 1.56e-18 80.9
MsaG005464 AT5G51870.5 51.389 72 35 0 5 76 21 92 1.85e-18 79.7
MsaG005464 AT3G57230.2 45.588 68 37 0 9 76 2 69 2.46e-18 78.2
MsaG005464 AT5G10140.2 52.174 69 32 1 9 76 2 70 2.58e-18 79.0
MsaG005464 AT5G51870.4 53.731 67 31 0 10 76 3 69 2.75e-18 80.1
MsaG005464 AT5G51870.3 53.731 67 31 0 10 76 13 79 3.22e-18 80.1
MsaG005464 AT4G18960.1 39.252 107 55 1 2 108 11 107 3.93e-18 80.1
MsaG005464 AT4G22950.2 50.746 67 33 0 10 76 3 69 4.40e-18 78.2
MsaG005464 AT5G10140.4 52.174 69 32 1 9 76 2 70 4.42e-18 78.6
MsaG005464 AT2G42830.1 49.333 75 36 1 2 76 12 84 4.63e-18 79.7
MsaG005464 AT2G42830.2 49.333 75 36 1 2 76 12 84 4.63e-18 80.1
MsaG005464 AT5G10140.3 52.174 69 32 1 9 76 2 70 4.81e-18 78.6
MsaG005464 AT5G62165.17 49.254 67 34 0 10 76 3 69 5.15e-18 77.8
MsaG005464 AT5G62165.12 49.254 67 34 0 10 76 3 69 5.15e-18 77.8
MsaG005464 AT5G62165.11 49.254 67 34 0 10 76 3 69 5.15e-18 77.8
MsaG005464 AT5G10140.1 52.174 69 32 1 9 76 2 70 5.42e-18 78.6
MsaG005464 AT5G62165.6 49.254 67 34 0 10 76 3 69 6.71e-18 77.4
MsaG005464 AT5G62165.9 49.254 67 34 0 10 76 3 69 6.71e-18 77.4
MsaG005464 AT5G62165.7 49.254 67 34 0 10 76 3 69 6.71e-18 77.4
MsaG005464 AT5G62165.8 49.254 67 34 0 10 76 3 69 6.71e-18 77.4
MsaG005464 AT5G62165.13 49.254 67 34 0 10 76 3 69 6.71e-18 77.4
MsaG005464 AT5G62165.14 49.254 67 34 0 10 76 3 69 7.64e-18 75.9
MsaG005464 AT3G58780.1 49.333 75 36 1 2 76 12 84 8.41e-18 79.3
MsaG005464 AT4G37940.1 47.059 68 36 0 9 76 2 69 1.01e-17 78.6
MsaG005464 AT3G58780.5 49.333 75 36 1 2 76 18 90 1.01e-17 79.0
MsaG005464 AT5G13790.1 51.471 68 33 0 9 76 2 69 1.04e-17 79.3
MsaG005464 AT5G13790.2 51.471 68 33 0 9 76 2 69 1.05e-17 79.3
MsaG005464 AT3G57230.1 45.588 68 37 0 9 76 2 69 1.08e-17 79.0
MsaG005464 AT3G57230.4 45.588 68 37 0 9 76 2 69 1.08e-17 79.0
MsaG005464 AT3G57390.3 48.529 68 35 0 9 76 2 69 1.11e-17 78.6
MsaG005464 AT4G37940.4 47.059 68 36 0 9 76 2 69 1.12e-17 78.2
MsaG005464 AT3G58780.4 49.333 75 36 1 2 76 12 84 1.47e-17 79.0
MsaG005464 AT4G22950.3 50.746 67 33 0 10 76 3 69 1.80e-17 77.8
MsaG005464 AT4G22950.1 50.746 67 33 0 10 76 3 69 1.80e-17 77.8
MsaG005464 AT4G37940.3 47.059 68 36 0 9 76 2 69 1.86e-17 76.6
MsaG005464 AT5G62165.10 49.254 67 34 0 10 76 3 69 2.13e-17 77.0
MsaG005464 AT5G62165.4 49.254 67 34 0 10 76 3 69 2.13e-17 77.0
MsaG005464 AT5G62165.3 49.254 67 34 0 10 76 3 69 2.14e-17 77.4
MsaG005464 AT5G62165.1 49.254 67 34 0 10 76 3 69 2.14e-17 77.4
MsaG005464 AT5G62165.2 49.254 67 34 0 10 76 3 69 2.14e-17 77.4
MsaG005464 AT3G57390.1 48.529 68 35 0 9 76 2 69 2.70e-17 78.2
MsaG005464 AT5G51860.2 50.746 67 33 0 10 76 3 69 7.97e-17 75.9
MsaG005464 AT1G26310.1 47.887 71 34 2 7 76 2 70 1.08e-16 76.3
MsaG005464 AT5G51860.1 50.746 67 33 0 10 76 3 69 1.10e-16 75.5
MsaG005464 AT3G30260.1 44.928 69 37 1 9 76 2 70 1.28e-16 76.3
MsaG005464 AT1G69120.2 47.887 71 34 2 7 76 2 70 1.64e-16 75.5
MsaG005464 AT3G61120.1 47.059 68 36 0 9 76 2 69 2.44e-16 75.1
MsaG005464 AT5G60910.1 46.377 69 36 1 9 76 2 70 2.54e-16 75.1
MsaG005464 AT4G11880.2 48.529 68 34 1 10 76 3 70 2.58e-16 73.9
MsaG005464 AT4G11880.3 48.529 68 34 1 10 76 3 70 2.58e-16 73.9
MsaG005464 AT1G77980.1 50.000 72 35 1 9 79 2 73 2.69e-16 76.3
MsaG005464 AT5G15800.1 47.826 69 35 1 9 76 2 70 2.83e-16 75.1
MsaG005464 AT2G14210.1 44.928 69 37 1 9 76 2 70 3.13e-16 74.7
MsaG005464 AT1G77950.3 47.222 72 37 1 9 79 2 73 3.15e-16 75.1
MsaG005464 AT1G77950.2 47.222 72 37 1 9 79 2 73 3.15e-16 75.1
MsaG005464 AT1G77950.1 47.222 72 37 1 9 79 2 73 3.15e-16 75.1
MsaG005464 AT1G77950.4 47.222 72 37 1 9 79 2 73 3.15e-16 75.1
MsaG005464 AT1G22130.1 38.710 93 56 1 9 100 2 94 3.74e-16 75.9
MsaG005464 AT2G22540.2 48.529 68 30 1 9 76 2 64 4.15e-16 74.3
MsaG005464 AT2G14210.2 44.928 69 37 1 9 76 2 70 4.24e-16 74.3
MsaG005464 AT5G20240.2 45.205 73 38 1 9 79 2 74 4.53e-16 72.4
MsaG005464 AT5G65050.2 47.826 69 35 1 9 76 2 70 4.69e-16 73.2
MsaG005464 AT1G69120.1 47.887 71 34 2 7 76 2 70 5.25e-16 74.3
MsaG005464 AT5G15800.2 47.826 69 35 1 9 76 2 70 5.34e-16 74.7
MsaG005464 AT1G28450.1 28.824 170 113 4 5 167 4 172 5.50e-16 73.2
MsaG005464 AT4G11880.4 48.529 68 34 1 10 76 3 70 5.62e-16 73.9
MsaG005464 AT4G11880.1 48.529 68 34 1 10 76 3 70 5.62e-16 73.9
MsaG005464 AT5G20240.1 45.205 73 38 1 9 79 2 74 7.57e-16 73.2
MsaG005464 AT5G65050.5 47.826 69 35 1 9 76 2 70 1.15e-15 72.4
MsaG005464 AT5G65050.3 47.826 69 35 1 9 76 2 70 1.29e-15 72.4
MsaG005464 AT5G65050.1 47.826 69 35 1 9 76 2 70 1.36e-15 72.0
MsaG005464 AT5G65060.3 47.826 69 35 1 9 76 2 70 1.41e-15 72.0
MsaG005464 AT3G58780.2 52.308 65 29 1 2 66 12 74 1.45e-15 73.2
MsaG005464 AT5G23260.4 49.333 75 36 1 5 77 14 88 1.49e-15 73.6
MsaG005464 AT5G23260.1 49.333 75 36 1 5 77 14 88 1.52e-15 73.2
MsaG005464 AT3G02310.2 46.377 69 36 1 9 76 2 70 1.55e-15 72.4
MsaG005464 AT3G58780.3 52.308 65 29 1 2 66 12 74 2.03e-15 73.2
MsaG005464 AT5G65060.2 47.826 69 35 1 9 76 2 70 2.26e-15 71.6
MsaG005464 AT3G54340.1 43.836 73 39 1 9 79 2 74 2.31e-15 72.4
MsaG005464 AT5G65060.1 47.826 69 35 1 9 76 2 70 2.32e-15 71.6
MsaG005464 AT2G03710.3 47.143 70 35 2 9 76 2 71 2.57e-15 71.2
MsaG005464 AT5G23260.2 50.704 71 33 1 9 77 2 72 3.47e-15 72.4
MsaG005464 AT5G23260.3 50.704 71 33 1 9 77 2 72 3.74e-15 72.0
MsaG005464 AT3G02310.1 46.377 69 36 1 9 76 2 70 5.17e-15 71.6
MsaG005464 AT1G24260.2 44.928 69 37 1 9 76 2 70 1.13e-14 70.9
MsaG005464 AT1G24260.1 44.928 69 37 1 9 76 2 70 1.15e-14 70.9
MsaG005464 AT1G24260.3 44.928 69 37 1 9 76 2 70 1.19e-14 70.5
MsaG005464 AT2G03710.2 47.143 70 35 2 9 76 2 71 1.19e-14 70.9
MsaG005464 AT2G03710.1 47.143 70 35 2 9 76 2 71 1.24e-14 70.9
MsaG005464 AT5G65070.4 40.580 69 40 1 9 76 2 70 1.24e-14 68.6
MsaG005464 AT2G22630.1 42.647 68 39 0 9 76 2 69 1.52e-14 70.1
MsaG005464 AT2G22630.2 42.647 68 39 0 9 76 2 69 1.52e-14 70.1
MsaG005464 AT1G47760.1 43.284 67 38 0 9 75 2 68 1.58e-14 69.3
MsaG005464 AT1G71692.1 44.928 69 37 1 10 77 3 71 1.72e-14 69.7
MsaG005464 AT1G17310.1 50.633 79 37 1 8 86 47 123 2.12e-14 69.3
MsaG005464 AT5G65070.1 40.580 69 40 1 9 76 2 70 2.66e-14 68.9
MsaG005464 AT1G17310.2 50.633 79 37 1 8 86 58 134 2.90e-14 69.3
MsaG005464 AT1G18750.4 42.667 75 41 1 9 81 2 76 4.19e-14 70.5
MsaG005464 AT1G18750.3 42.667 75 41 1 9 81 2 76 4.97e-14 70.1
MsaG005464 AT1G18750.1 42.667 75 41 1 9 81 2 76 5.02e-14 70.1
MsaG005464 AT5G65070.2 40.580 69 40 1 9 76 2 70 6.09e-14 68.6
MsaG005464 AT5G65070.5 40.580 69 40 1 9 76 2 70 7.70e-14 67.8
MsaG005464 AT5G65070.3 45.614 57 31 0 9 65 2 58 4.09e-13 66.2
MsaG005464 AT5G65080.3 40.580 69 40 1 9 76 9 77 1.26e-12 64.3
MsaG005464 AT4G37435.1 46.429 56 30 0 9 64 2 57 3.31e-12 62.8
MsaG005464 AT5G65080.2 41.935 62 36 0 1 62 1 62 4.84e-12 62.8
MsaG005464 AT1G69540.1 43.243 74 41 1 9 81 2 75 5.29e-12 64.3
MsaG005464 AT1G69540.2 43.243 74 41 1 9 81 2 75 7.56e-12 63.9
MsaG005464 AT2G03060.3 40.000 75 43 1 9 81 2 76 1.82e-11 62.8
MsaG005464 AT2G03060.7 40.000 75 43 1 9 81 2 76 1.82e-11 62.8
MsaG005464 AT2G03060.1 40.000 75 43 1 9 81 2 76 1.82e-11 62.8
MsaG005464 AT5G49420.1 36.957 92 51 2 5 89 3 94 1.94e-11 62.4
MsaG005464 AT2G03060.2 40.000 75 43 1 9 81 2 76 2.04e-11 62.4
MsaG005464 AT1G77080.11 49.275 69 34 1 9 76 2 70 2.07e-11 60.5
MsaG005464 AT1G77080.5 49.275 69 34 1 9 76 2 70 2.34e-11 60.5
MsaG005464 AT5G49490.1 37.500 88 48 2 5 85 41 128 3.07e-11 61.6
MsaG005464 AT1G77080.4 49.275 69 34 1 9 76 2 70 5.73e-11 59.7

Find 44 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.249457 1:+81719532 MsaT005464.1:CDS
ATTTCAGCTTGTTGAGGATT+TGG 0.288922 1:-81719659 None:intergenic
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1:+81719497 MsaT005464.1:CDS
CCTCTGTTTCCTTGAGCAAA+TGG 0.356090 1:-81719466 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.372729 1:-81719438 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1:-81719294 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1:+81719508 MsaT005464.1:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1:+81719507 MsaT005464.1:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1:+81719498 MsaT005464.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.441727 1:+81719212 MsaT005464.1:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1:-81719293 None:intergenic
AGGAAACAGAGGCTAAGTTT+TGG 0.455034 1:+81719477 MsaT005464.1:CDS
CATAGACCGCTATCTTTCTC+TGG 0.460785 1:+81719310 MsaT005464.1:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.460994 1:+81719431 MsaT005464.1:CDS
GTTGAGGATTTGGCTGATGA+TGG 0.467757 1:-81719649 None:intergenic
CTTTCTCAAAGCGCCGTAGC+GGG 0.471817 1:+81719174 MsaT005464.1:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 1:-81719509 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1:-81719225 None:intergenic
GCCTTTCTTTCCGCTCGACA+TGG 0.505646 1:-81719093 None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG 0.510063 1:+81719092 None:intergenic
AGCATTGAGTTCACGAACAT+TGG 0.517207 1:-81719384 None:intergenic
ACAAAGGGTGCAAAGCTCAC+TGG 0.525840 1:-81719210 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1:+81719286 MsaT005464.1:CDS
TGTATTCTCACCTAGTGGTA+AGG 0.555867 1:+81719253 MsaT005464.1:CDS
GGAAACATTTCAGCTTGTTG+AGG 0.562544 1:-81719665 None:intergenic
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1:-81719282 None:intergenic
CGAGAAGAAGATTGGCGATG+AGG 0.586593 1:+81719439 MsaT005464.1:CDS
TGAGGTGAGCCATTTGCTCA+AGG 0.593970 1:+81719457 MsaT005464.1:CDS
ACTTTCTCAAAGCGCCGTAG+CGG 0.594013 1:+81719173 MsaT005464.1:CDS
TCGAGCGGAAAGAAAGGCCG+AGG 0.597603 1:+81719098 MsaT005464.1:CDS
TGGCACCATGCAACTCATTG+AGG 0.610323 1:+81719349 MsaT005464.1:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1:-81719633 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.611491 1:+81719248 MsaT005464.1:CDS
AAGGAAAATACCTTACCACT+AGG 0.624124 1:-81719263 None:intergenic
GTTCACGAACATTGGCATTG+CGG 0.625359 1:-81719376 None:intergenic
CTTTCTTGAAGATCCCGCTA+CGG 0.625983 1:-81719187 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 1:-81719226 None:intergenic
TCTAAAATTATCAGCATAGG+CGG 0.629394 1:+81719957 MsaT005464.1:intron
TGTGCTTAAGCCATGTCGAG+CGG 0.639376 1:+81719083 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1:-81719292 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1:+81719412 MsaT005464.1:CDS
CCATTTGCTCAAGGAAACAG+AGG 0.656067 1:+81719466 MsaT005464.1:CDS
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 1:-81719354 None:intergenic
GGGGTACCAGAGAAAGATAG+CGG 0.705690 1:-81719316 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 81719095 81720001 81719095 ID=MsaG005464
Chr1 mRNA 81719095 81720001 81719095 ID=MsaT005464.1;Parent=MsaG005464
Chr1 exon 81719095 81719681 81719095 ID=MsaT005464.1.exon1;Parent=MsaT005464.1
Chr1 CDS 81719095 81719681 81719095 ID=cds.MsaT005464.1;Parent=MsaT005464.1
Chr1 exon 81719971 81720001 81719971 ID=MsaT005464.1.exon2;Parent=MsaT005464.1
Chr1 CDS 81719971 81720001 81719971 ID=cds.MsaT005464.1;Parent=MsaT005464.1
Gene Sequence

>MsaT005464.1

ATGTCGAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAGCGGGATCTTCAAGAAAGCCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGTAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCCCCACAAAACAATGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAATGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGGTGAGCCATTTGCTCAAGGAAACAGAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCAAACTCATCCATTTTTTGTTGGCGACGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATCCTCAACAAGCTGAAATCATAGGCGGCAAAATAAGTATTAGTCAGTAA
Protein sequence

>MsaT005464.1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGIFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIGDEVSHLLKETEAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATQTHPFFVGDASSSNIYLHHQPNPQQAEIIGGKISISQ*