AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005466

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005466 MtrunA17_Chr1g0208561 95.522 134 6 0 1 134 1 134 3.39e-92 266
MsaG005466 MtrunA17_Chr3g0089141 94.776 134 7 0 1 134 1 134 1.08e-90 262
MsaG005466 MtrunA17_Chr1g0208581 89.552 134 14 0 1 134 1 134 1.47e-85 249
MsaG005466 MtrunA17_Chr2g0325971 89.552 134 14 0 1 134 1 134 1.15e-84 247
MsaG005466 MtrunA17_Chr2g0300421 83.582 134 22 0 1 134 1 134 2.68e-78 229
MsaG005466 MtrunA17_Chr1g0206721 82.836 134 23 0 1 134 1 134 1.38e-77 229
MsaG005466 MtrunA17_Chr8g0355091 82.836 134 23 0 1 134 1 134 3.40e-76 226
MsaG005466 MtrunA17_Chr3g0099411 85.039 127 19 0 1 127 1 127 4.57e-76 225
MsaG005466 MtrunA17_Chr1g0206701 79.851 134 27 0 1 134 1 134 4.51e-74 221
MsaG005466 MtrunA17_Chr1g0206991 78.358 134 29 0 1 134 1 134 8.23e-74 218
MsaG005466 MtrunA17_Chr3g0099421 77.612 134 30 0 1 134 26 159 2.47e-72 217
MsaG005466 MtrunA17_Chr2g0292791 78.358 134 29 0 1 134 1 134 3.81e-72 216
MsaG005466 MtrunA17_Chr1g0149391 77.612 134 30 0 1 134 1 134 2.05e-71 214
MsaG005466 MtrunA17_Chr2g0300441 76.866 134 31 0 1 134 1 134 2.16e-68 206
MsaG005466 MtrunA17_Chr3g0089151 73.485 132 35 0 1 132 1 132 1.94e-67 200
MsaG005466 MtrunA17_Chr1g0187361 73.881 134 35 0 1 134 1 134 8.72e-67 202
MsaG005466 MtrunA17_Chr5g0419601 69.403 134 41 0 1 134 1 134 7.09e-62 190
MsaG005466 MtrunA17_Chr1g0188671 67.910 134 43 0 1 134 39 172 2.23e-61 190
MsaG005466 MtrunA17_Chr2g0317451 65.672 134 46 0 1 134 1 134 1.02e-59 184
MsaG005466 MtrunA17_Chr2g0317481 65.672 134 46 0 1 134 1 134 1.17e-59 184
MsaG005466 MtrunA17_Chr1g0206691 74.359 117 30 0 18 134 1 117 3.98e-59 182
MsaG005466 MtrunA17_Chr5g0422941 61.806 144 49 1 1 138 1 144 2.28e-57 178
MsaG005466 MtrunA17_Chr5g0422421 66.418 134 45 0 1 134 1 134 2.86e-57 178
MsaG005466 MtrunA17_Chr3g0085241 58.333 132 55 0 3 134 35 166 8.57e-54 169
MsaG005466 MtrunA17_Chr3g0119901 60.317 126 50 0 9 134 9 134 8.77e-54 168
MsaG005466 MtrunA17_Chr7g0238991 68.333 120 37 1 16 134 27 146 9.13e-51 162
MsaG005466 MtrunA17_Chr3g0111931 61.165 103 40 0 21 123 2 104 2.02e-41 134
MsaG005466 MtrunA17_Chr1g0187351 81.818 66 12 0 18 83 1 66 4.45e-34 114
MsaG005466 MtrunA17_Chr8g0379021 43.307 127 62 2 5 128 8 127 5.95e-30 106
MsaG005466 MtrunA17_Chr3g0111841 77.966 59 13 0 15 73 2 60 8.81e-29 100
MsaG005466 MtrunA17_Chr2g0333981 40.157 127 66 2 5 128 8 127 7.82e-27 99.0
MsaG005466 MtrunA17_Chr1g0175601 39.231 130 76 2 9 137 2 129 4.31e-25 94.4
MsaG005466 MtrunA17_Chr1g0180591 45.536 112 56 3 9 118 2 110 6.55e-25 94.0
MsaG005466 MtrunA17_Chr4g0018951 48.454 97 42 2 22 118 25 113 1.87e-24 92.4
MsaG005466 MtrunA17_Chr8g0376821 56.522 69 30 0 9 77 2 70 1.39e-23 90.5
MsaG005466 MtrunA17_Chr1g0169761 56.522 69 30 0 9 77 2 70 1.60e-23 90.5
MsaG005466 MtrunA17_Chr4g0074101 35.526 152 81 5 9 144 2 152 1.61e-23 90.9
MsaG005466 MtrunA17_Chr1g0175611 51.948 77 37 0 9 85 2 78 2.10e-23 89.7
MsaG005466 MtrunA17_Chr8g0357771 55.072 69 31 0 9 77 2 70 6.01e-22 86.3
MsaG005466 MtrunA17_Chr4g0052081 40.566 106 62 1 9 113 2 107 1.40e-21 85.5
MsaG005466 MtrunA17_Chr8g0356071 34.559 136 81 2 9 144 2 129 2.42e-21 84.3
MsaG005466 MtrunA17_Chr3g0111831 61.905 63 24 0 16 78 11 73 2.74e-21 82.0
MsaG005466 MtrunA17_Chr4g0052061 38.679 106 63 1 9 114 2 105 2.84e-21 84.0
MsaG005466 MtrunA17_Chr3g0077501 52.941 68 32 0 9 76 2 69 1.16e-20 84.0
MsaG005466 MtrunA17_Chr4g0071601 40.945 127 65 2 5 128 8 127 1.79e-20 82.8
MsaG005466 MtrunA17_Chr4g0057151 53.731 67 31 0 10 76 3 69 3.54e-20 82.4
MsaG005466 MtrunA17_Chr3g0134451 45.098 102 53 3 9 109 2 101 6.44e-20 83.6
MsaG005466 MtrunA17_Chr3g0097101 50.000 74 37 0 3 76 11 84 1.31e-19 81.6
MsaG005466 MtrunA17_Chr8g0351041 47.436 78 41 0 10 87 3 80 2.33e-19 79.3
MsaG005466 MtrunA17_Chr8g0351051 38.525 122 69 3 7 126 2 119 2.50e-19 80.9
MsaG005466 MtrunA17_Chr5g0427401 50.000 68 34 0 9 76 2 69 4.45e-19 79.7
MsaG005466 MtrunA17_Chr4g0049901 56.061 66 29 0 10 75 29 94 4.72e-19 80.1
MsaG005466 MtrunA17_Chr2g0279821 48.529 68 35 0 9 76 2 69 8.05e-19 79.3
MsaG005466 MtrunA17_Chr7g0246431 50.746 67 33 0 10 76 3 69 1.09e-18 78.6
MsaG005466 MtrunA17_Chr8g0351031 50.725 69 34 0 10 78 3 71 1.15e-18 79.0
MsaG005466 MtrunA17_Chr2g0284911 36.641 131 77 3 9 134 17 146 2.73e-18 78.6
MsaG005466 MtrunA17_Chr8g0380021 48.000 75 39 0 2 76 11 85 2.84e-18 78.2
MsaG005466 MtrunA17_Chr5g0412271 47.059 68 36 0 9 76 2 69 6.75e-18 76.6
MsaG005466 MtrunA17_Chr5g0412461 47.761 67 35 0 10 76 3 69 7.77e-18 76.6
MsaG005466 MtrunA17_Chr1g0173161 54.098 61 28 0 9 69 2 62 8.48e-18 73.2
MsaG005466 MtrunA17_Chr6g0455511 49.275 69 34 1 9 76 2 70 1.21e-17 76.6
MsaG005466 MtrunA17_Chr6g0474371 47.887 71 34 2 7 76 2 70 1.55e-17 75.1
MsaG005466 MtrunA17_Chr7g0220111 50.704 71 32 2 7 76 2 70 1.58e-17 76.3
MsaG005466 MtrunA17_Chr4g0061691 46.479 71 35 2 7 76 2 70 1.73e-17 75.9
MsaG005466 MtrunA17_Chr1g0204111 48.529 68 35 0 9 76 18 85 1.87e-17 76.3
MsaG005466 MtrunA17_Chr4g0020221 48.529 68 35 0 9 76 2 69 2.87e-17 75.5
MsaG005466 MtrunA17_Chr7g0246381 50.746 67 28 1 9 70 2 68 3.65e-17 70.9
MsaG005466 MtrunA17_Chr4g0049541 36.885 122 68 4 9 126 2 118 4.02e-17 74.7
MsaG005466 MtrunA17_Chr5g0420091 47.826 69 35 1 9 76 2 70 5.30e-17 74.3
MsaG005466 MtrunA17_Chr5g0411691 47.059 68 36 0 9 76 2 69 6.14e-17 74.3
MsaG005466 MtrunA17_Chr3g0125241 47.143 70 35 1 9 76 27 96 8.01e-17 73.6
MsaG005466 MtrunA17_Chr5g0404951 50.000 70 33 1 9 76 2 71 2.18e-16 72.8
MsaG005466 MtrunA17_Chr8g0377561 53.571 56 26 0 9 64 2 57 3.38e-16 69.3
MsaG005466 MtrunA17_Chr1g0164791 48.571 70 34 1 9 76 2 71 3.57e-16 72.4
MsaG005466 MtrunA17_Chr4g0061671 52.542 59 26 1 7 65 2 58 4.22e-16 71.2
MsaG005466 MtrunA17_Chr8g0366231 44.928 69 37 1 9 76 2 70 5.45e-16 72.0
MsaG005466 MtrunA17_Chr3g0122251 55.357 56 25 0 9 64 2 57 1.00e-15 71.2
MsaG005466 MtrunA17_Chr7g0220121 43.662 71 37 2 7 76 2 70 1.04e-15 71.6
MsaG005466 MtrunA17_Chr2g0308251 43.056 72 40 1 9 79 2 73 1.06e-15 67.8
MsaG005466 MtrunA17_Chr5g0425191 58.491 53 22 0 9 61 2 54 1.23e-15 68.2
MsaG005466 MtrunA17_Chr4g0044071 54.386 57 26 0 9 65 2 58 2.05e-15 67.8
MsaG005466 MtrunA17_Chr3g0142191 45.714 70 36 1 9 76 2 71 2.26e-15 70.1
MsaG005466 MtrunA17_Chr5g0420081 42.029 69 39 1 9 76 2 70 2.56e-15 70.1
MsaG005466 MtrunA17_Chr8g0345001 44.000 75 42 0 8 82 17 91 4.49e-15 68.6
MsaG005466 MtrunA17_Chr5g0427921 47.368 57 30 0 9 65 2 58 4.69e-15 65.5
MsaG005466 MtrunA17_Chr1g0159661 42.857 70 38 1 9 76 2 71 4.95e-15 68.2
MsaG005466 MtrunA17_Chr4g0060841 31.061 132 86 4 9 137 2 131 7.87e-14 67.0
MsaG005466 MtrunA17_Chr1g0166611 36.190 105 58 2 20 123 17 113 1.71e-13 63.2
MsaG005466 MtrunA17_Chr5g0417661 43.056 72 35 1 9 80 57 122 6.74e-13 61.6
MsaG005466 MtrunA17_Chr4g0018421 40.000 70 41 1 9 77 2 71 5.11e-12 60.8
MsaG005466 MtrunA17_Chr4g0025531 39.506 81 49 0 1 81 1 81 1.29e-11 60.1
MsaG005466 MtrunA17_Chr3g0093131 46.296 54 28 1 26 78 36 89 6.20e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005466 AT5G60440.1 57.343 143 55 2 4 144 2 140 6.18e-50 162
MsaG005466 AT4G36590.1 53.383 133 54 3 4 130 2 132 1.33e-36 126
MsaG005466 AT1G01530.1 46.809 141 69 2 4 144 2 136 2.96e-35 122
MsaG005466 AT1G65360.1 50.435 115 55 1 4 118 2 114 1.50e-34 120
MsaG005466 AT2G24840.1 50.400 125 54 3 9 130 63 182 2.99e-34 120
MsaG005466 AT2G34440.1 43.363 113 63 1 9 121 2 113 3.50e-27 100
MsaG005466 AT3G66656.1 40.157 127 72 1 9 131 2 128 2.58e-25 95.5
MsaG005466 AT3G04100.1 36.364 121 72 2 2 117 7 127 4.67e-22 87.8
MsaG005466 AT4G09960.2 39.098 133 71 4 9 134 2 131 8.88e-22 87.0
MsaG005466 AT4G09960.1 39.098 133 71 4 9 134 2 131 1.33e-21 87.0
MsaG005466 AT4G09960.6 39.098 133 71 4 9 134 3 132 1.49e-21 87.0
MsaG005466 AT4G09960.5 39.098 133 71 4 9 134 12 141 1.99e-21 86.7
MsaG005466 AT2G45660.2 52.941 68 32 0 10 77 3 70 2.27e-21 84.7
MsaG005466 AT4G09960.3 39.098 133 71 4 9 134 28 157 2.49e-21 86.7
MsaG005466 AT1G28460.1 38.776 98 60 0 5 102 4 101 5.18e-21 84.3
MsaG005466 AT4G09960.4 39.416 137 71 5 5 134 95 226 6.61e-21 86.7
MsaG005466 AT2G45660.1 52.941 68 32 0 10 77 3 70 8.55e-21 84.3
MsaG005466 AT2G45650.1 52.941 68 32 0 9 76 2 69 2.14e-20 84.3
MsaG005466 AT1G72350.1 45.055 91 41 2 9 99 43 124 6.06e-20 82.4
MsaG005466 AT3G57230.2 47.059 68 36 0 9 76 2 69 1.80e-19 79.3
MsaG005466 AT4G18960.1 40.187 107 54 1 2 108 11 107 2.67e-19 81.3
MsaG005466 AT4G22950.2 52.239 67 32 0 10 76 3 69 3.05e-19 79.3
MsaG005466 AT5G10140.2 53.623 69 31 1 9 76 2 70 3.53e-19 79.3
MsaG005466 AT5G62165.17 50.746 67 33 0 10 76 3 69 3.79e-19 79.0
MsaG005466 AT5G62165.12 50.746 67 33 0 10 76 3 69 3.79e-19 79.0
MsaG005466 AT5G62165.11 50.746 67 33 0 10 76 3 69 3.79e-19 79.0
MsaG005466 AT5G62165.14 50.746 67 33 0 10 76 3 69 4.49e-19 77.4
MsaG005466 AT1G29962.1 37.624 101 60 1 5 102 4 104 5.10e-19 79.3
MsaG005466 AT5G62165.6 50.746 67 33 0 10 76 3 69 5.41e-19 78.2
MsaG005466 AT5G62165.9 50.746 67 33 0 10 76 3 69 5.41e-19 78.2
MsaG005466 AT5G62165.7 50.746 67 33 0 10 76 3 69 5.41e-19 78.2
MsaG005466 AT5G62165.8 50.746 67 33 0 10 76 3 69 5.41e-19 78.2
MsaG005466 AT5G62165.13 50.746 67 33 0 10 76 3 69 5.41e-19 78.2
MsaG005466 AT5G10140.3 53.623 69 31 1 9 76 2 70 5.98e-19 79.0
MsaG005466 AT5G10140.4 53.623 69 31 1 9 76 2 70 6.38e-19 79.0
MsaG005466 AT5G10140.1 53.623 69 31 1 9 76 2 70 8.41e-19 79.0
MsaG005466 AT2G22540.3 50.000 68 34 0 9 76 2 69 9.16e-19 79.7
MsaG005466 AT2G22540.1 50.000 68 34 0 9 76 2 69 9.16e-19 79.7
MsaG005466 AT3G57390.3 50.000 68 34 0 9 76 2 69 9.19e-19 79.3
MsaG005466 AT5G51870.2 52.239 67 32 0 10 76 3 69 1.18e-18 77.8
MsaG005466 AT3G57230.1 47.059 68 36 0 9 76 2 69 1.19e-18 79.3
MsaG005466 AT3G57230.4 47.059 68 36 0 9 76 2 69 1.19e-18 79.3
MsaG005466 AT4G22950.3 52.239 67 32 0 10 76 3 69 1.46e-18 79.0
MsaG005466 AT4G22950.1 52.239 67 32 0 10 76 3 69 1.46e-18 79.0
MsaG005466 AT5G51870.1 52.239 67 32 0 10 76 3 69 1.51e-18 78.6
MsaG005466 AT2G42830.1 49.333 75 36 1 2 76 12 84 1.53e-18 79.3
MsaG005466 AT4G24540.1 50.000 68 34 0 9 76 2 69 1.56e-18 78.6
MsaG005466 AT2G42830.2 49.333 75 36 1 2 76 12 84 1.63e-18 79.3
MsaG005466 AT3G57390.1 50.000 68 34 0 9 76 2 69 1.87e-18 79.3
MsaG005466 AT5G62165.3 50.746 67 33 0 10 76 3 69 1.91e-18 78.2
MsaG005466 AT5G62165.1 50.746 67 33 0 10 76 3 69 1.91e-18 78.2
MsaG005466 AT5G62165.2 50.746 67 33 0 10 76 3 69 1.91e-18 78.2
MsaG005466 AT5G62165.10 50.746 67 33 0 10 76 3 69 1.94e-18 77.8
MsaG005466 AT5G62165.4 50.746 67 33 0 10 76 3 69 1.94e-18 77.8
MsaG005466 AT5G51870.4 52.239 67 32 0 10 76 3 69 2.66e-18 78.2
MsaG005466 AT5G51870.5 52.239 67 32 0 10 76 26 92 3.04e-18 77.4
MsaG005466 AT3G58780.1 49.333 75 36 1 2 76 12 84 3.11e-18 78.6
MsaG005466 AT3G58780.5 49.333 75 36 1 2 76 18 90 3.54e-18 78.6
MsaG005466 AT5G51870.3 52.239 67 32 0 10 76 13 79 3.57e-18 77.8
MsaG005466 AT4G37940.1 47.059 68 36 0 9 76 2 69 4.66e-18 77.8
MsaG005466 AT4G37940.4 47.059 68 36 0 9 76 2 69 4.92e-18 77.4
MsaG005466 AT3G58780.4 49.333 75 36 1 2 76 12 84 6.41e-18 78.2
MsaG005466 AT4G37940.3 47.059 68 36 0 9 76 2 69 6.80e-18 75.9
MsaG005466 AT5G13790.2 50.000 68 34 0 9 76 2 69 1.45e-17 77.0
MsaG005466 AT5G13790.1 50.000 68 34 0 9 76 2 69 1.58e-17 77.0
MsaG005466 AT4G11880.2 50.000 68 33 1 10 76 3 70 1.82e-17 75.1
MsaG005466 AT4G11880.3 50.000 68 33 1 10 76 3 70 1.82e-17 75.1
MsaG005466 AT5G65050.2 49.275 69 34 1 9 76 2 70 2.85e-17 74.3
MsaG005466 AT4G11880.4 50.000 68 33 1 10 76 3 70 4.22e-17 75.1
MsaG005466 AT4G11880.1 50.000 68 33 1 10 76 3 70 4.22e-17 75.1
MsaG005466 AT1G77980.1 51.389 72 34 1 9 79 2 73 4.53e-17 76.3
MsaG005466 AT1G22130.1 39.785 93 55 1 9 100 2 94 5.22e-17 76.3
MsaG005466 AT5G15800.1 49.275 69 34 1 9 76 2 70 6.03e-17 75.1
MsaG005466 AT5G20240.2 46.575 73 37 1 9 79 2 74 6.25e-17 72.8
MsaG005466 AT3G30260.1 44.928 69 37 1 9 76 2 70 8.53e-17 74.7
MsaG005466 AT5G65050.5 49.275 69 34 1 9 76 2 70 8.79e-17 73.6
MsaG005466 AT5G65050.3 49.275 69 34 1 9 76 2 70 9.74e-17 73.6
MsaG005466 AT5G20240.1 46.575 73 37 1 9 79 2 74 9.78e-17 73.6
MsaG005466 AT5G15800.2 49.275 69 34 1 9 76 2 70 1.04e-16 74.7
MsaG005466 AT5G65050.1 49.275 69 34 1 9 76 2 70 1.14e-16 73.2
MsaG005466 AT5G51860.2 49.254 67 34 0 10 76 3 69 1.26e-16 73.2
MsaG005466 AT1G26310.1 47.887 71 34 2 7 76 2 70 1.27e-16 74.3
MsaG005466 AT5G51860.1 49.254 67 34 0 10 76 3 69 1.58e-16 73.2
MsaG005466 AT3G54340.1 45.205 73 38 1 9 79 2 74 1.72e-16 73.6
MsaG005466 AT3G02310.2 47.826 69 35 1 9 76 2 70 2.62e-16 72.4
MsaG005466 AT2G22540.2 49.254 67 29 1 10 76 3 64 2.64e-16 73.2
MsaG005466 AT2G03710.3 48.571 70 34 2 9 76 2 71 2.66e-16 72.0
MsaG005466 AT1G69120.2 47.887 71 34 2 7 76 2 70 2.80e-16 73.2
MsaG005466 AT1G77950.3 47.222 72 37 1 9 79 2 73 3.07e-16 73.2
MsaG005466 AT1G77950.2 47.222 72 37 1 9 79 2 73 3.07e-16 73.2
MsaG005466 AT1G77950.1 47.222 72 37 1 9 79 2 73 3.07e-16 73.2
MsaG005466 AT1G77950.4 47.222 72 37 1 9 79 2 73 3.07e-16 73.2
MsaG005466 AT3G61120.1 45.588 68 37 0 9 76 2 69 3.93e-16 72.8
MsaG005466 AT5G23260.1 50.000 80 36 2 2 77 9 88 4.42e-16 72.8
MsaG005466 AT5G23260.4 50.000 80 36 2 2 77 9 88 4.59e-16 72.8
MsaG005466 AT1G28450.1 33.663 101 64 1 5 102 4 104 4.62e-16 71.6
MsaG005466 AT3G58780.2 52.308 65 29 1 2 66 12 74 4.99e-16 72.4
MsaG005466 AT5G60910.1 44.928 69 37 1 9 76 2 70 5.11e-16 72.4
MsaG005466 AT5G23260.2 52.113 71 32 1 9 77 2 72 6.60e-16 72.4
MsaG005466 AT2G14210.1 43.478 69 38 1 9 76 2 70 6.85e-16 72.0
MsaG005466 AT5G23260.3 52.113 71 32 1 9 77 2 72 6.95e-16 72.0
MsaG005466 AT3G58780.3 52.308 65 29 1 2 66 12 74 7.54e-16 72.4
MsaG005466 AT5G65060.3 47.826 69 35 1 9 76 2 70 7.72e-16 70.9
MsaG005466 AT1G69120.1 47.887 71 34 2 7 76 2 70 7.93e-16 72.0
MsaG005466 AT2G14210.2 43.478 69 38 1 9 76 2 70 9.20e-16 71.6
MsaG005466 AT5G65060.2 47.826 69 35 1 9 76 2 70 1.09e-15 70.5
MsaG005466 AT5G65070.4 42.029 69 39 1 9 76 2 70 1.21e-15 69.3
MsaG005466 AT3G02310.1 47.826 69 35 1 9 76 2 70 1.23e-15 71.6
MsaG005466 AT5G65060.1 47.826 69 35 1 9 76 2 70 1.29e-15 70.5
MsaG005466 AT2G03710.2 48.571 70 34 2 9 76 2 71 1.37e-15 71.6
MsaG005466 AT2G03710.1 48.571 70 34 2 9 76 2 71 1.42e-15 71.6
MsaG005466 AT1G24260.2 53.571 56 26 0 9 64 2 57 1.99e-15 70.9
MsaG005466 AT1G24260.1 53.571 56 26 0 9 64 2 57 2.00e-15 70.9
MsaG005466 AT1G24260.3 53.571 56 26 0 9 64 2 57 2.12e-15 70.9
MsaG005466 AT5G65070.1 42.029 69 39 1 9 76 2 70 2.61e-15 69.7
MsaG005466 AT1G17310.1 54.054 74 32 1 8 81 47 118 5.72e-15 69.3
MsaG005466 AT1G47760.1 41.791 67 39 0 9 75 2 68 6.90e-15 68.6
MsaG005466 AT5G65070.2 42.029 69 39 1 9 76 2 70 6.99e-15 69.3
MsaG005466 AT1G17310.2 51.899 79 36 1 8 86 58 134 7.84e-15 68.9
MsaG005466 AT5G65070.5 42.029 69 39 1 9 76 2 70 8.14e-15 68.6
MsaG005466 AT2G22630.1 42.647 68 39 0 9 76 2 69 1.02e-14 68.6
MsaG005466 AT2G22630.2 42.647 68 39 0 9 76 2 69 1.02e-14 68.6
MsaG005466 AT1G71692.1 44.928 69 37 1 10 77 3 71 1.59e-14 67.8
MsaG005466 AT1G18750.4 41.333 75 42 1 9 81 2 76 2.22e-14 69.3
MsaG005466 AT1G18750.3 41.333 75 42 1 9 81 2 76 2.44e-14 68.9
MsaG005466 AT1G18750.1 41.333 75 42 1 9 81 2 76 2.48e-14 68.9
MsaG005466 AT5G65070.3 47.368 57 30 0 9 65 2 58 5.31e-14 67.0
MsaG005466 AT5G65080.3 33.051 118 52 2 9 125 9 100 1.38e-13 65.1
MsaG005466 AT4G37435.1 48.214 56 29 0 9 64 2 57 2.45e-13 64.3
MsaG005466 AT5G65080.2 48.148 54 28 0 9 62 9 62 6.51e-13 63.5
MsaG005466 AT1G77080.11 50.725 69 33 1 9 76 2 70 1.99e-12 61.6
MsaG005466 AT1G77080.5 50.725 69 33 1 9 76 2 70 2.19e-12 61.6
MsaG005466 AT1G77080.4 50.725 69 33 1 9 76 2 70 6.77e-12 60.8
MsaG005466 AT1G69540.1 40.541 74 43 1 9 81 2 75 9.05e-12 61.6
MsaG005466 AT1G69540.2 40.541 74 43 1 9 81 2 75 1.13e-11 61.6
MsaG005466 AT5G49420.1 35.484 93 53 2 4 89 2 94 1.51e-11 60.8
MsaG005466 AT2G03060.2 38.667 75 44 1 9 81 2 76 1.62e-11 60.8
MsaG005466 AT2G03060.3 38.667 75 44 1 9 81 2 76 1.69e-11 60.8
MsaG005466 AT2G03060.7 38.667 75 44 1 9 81 2 76 1.69e-11 60.8
MsaG005466 AT2G03060.1 38.667 75 44 1 9 81 2 76 1.69e-11 60.8
MsaG005466 AT1G77080.8 50.725 69 33 1 9 76 2 70 1.76e-11 60.1
MsaG005466 AT5G49490.1 36.709 79 46 1 4 78 40 118 2.35e-11 60.1
MsaG005466 AT1G46408.1 41.250 80 43 2 7 82 2 81 8.04e-11 58.5

Find 33 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCCGTTTCCTTGAGCAAA+TGG 0.377544 1:-81724390 None:intergenic
GTCTATGACCGTATCAAGAT+TGG 0.398383 1:-81724218 None:intergenic
CTTTCTCAAAGCGCCGTAAC+GGG 0.409500 1:+81724098 MsaT005466.1:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1:-81724217 None:intergenic
AGGAAACGGAGGCTAAGTTT+TGG 0.457330 1:+81724401 MsaT005466.1:CDS
CATAGACCGCTATCTTTCTC+TGG 0.460785 1:+81724234 MsaT005466.1:CDS
AGTGAGCTTTGCACCCTTTG+TGG 0.471832 1:+81724136 MsaT005466.1:CDS
GCCTTTCCTTGCACTCGACA+TGG 0.474891 1:-81724017 None:intergenic
ACTTTCTCAAAGCGCCGTAA+CGG 0.489334 1:+81724097 MsaT005466.1:CDS
GAGCCATTTGCTCAAGGAAA+CGG 0.489556 1:+81724387 MsaT005466.1:CDS
AGCAGCATCTGCACCACAAA+GGG 0.494828 1:-81724149 None:intergenic
TTAGCGAGCTGCATCTCGCA+TGG 0.525297 1:+81725406 MsaT005466.1:intron
TGGTCACCCCAATCTTGATA+CGG 0.553864 1:+81724210 MsaT005466.1:CDS
CCTTCTTGAAGAGCCCGTTA+CGG 0.572175 1:-81724111 None:intergenic
CTTCAGCCATGTCGAGTGCA+AGG 0.573469 1:+81724011 None:intergenic
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1:-81724206 None:intergenic
CCGTAACGGGCTCTTCAAGA+AGG 0.583842 1:+81724111 MsaT005466.1:CDS
CGGCACCATGCAACTCATTG+AGG 0.589770 1:+81724273 MsaT005466.1:CDS
CTAGTTGTATTCTCGCCTAG+TGG 0.592221 1:+81724172 MsaT005466.1:CDS
TCGAGTGCAAGGAAAGGCCG+AGG 0.595815 1:+81724022 MsaT005466.1:CDS
TGAGCTGAGCCATTTGCTCA+AGG 0.597593 1:+81724381 MsaT005466.1:CDS
AGCATTGAGTTCACGAACGT+TGG 0.603238 1:-81724308 None:intergenic
TGTATTCTCGCCTAGTGGAA+AGG 0.608216 1:+81724177 MsaT005466.1:CDS
GAGCAGCATCTGCACCACAA+AGG 0.621182 1:-81724150 None:intergenic
GCCATGTCGAGTGCAAGGAA+AGG 0.627385 1:+81724016 None:intergenic
AAGGAAAATACCTTTCCACT+AGG 0.627897 1:-81724187 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 1:-81724300 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1:-81724216 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1:+81724336 MsaT005466.1:CDS
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 1:-81724278 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.676667 1:+81724390 MsaT005466.1:CDS
GTGGTACCAGAGAAAGATAG+CGG 0.703250 1:-81724240 None:intergenic
CTGGTACCACCACAAAACAA+CGG 0.718153 1:+81724253 MsaT005466.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 81724019 81725440 81724019 ID=MsaG005466
Chr1 mRNA 81724019 81725440 81724019 ID=MsaT005466.1;Parent=MsaG005466
Chr1 exon 81724019 81724422 81724019 ID=MsaT005466.1.exon1;Parent=MsaT005466.1
Chr1 CDS 81724019 81724422 81724019 ID=cds.MsaT005466.1;Parent=MsaT005466.1
Chr1 exon 81725410 81725440 81725410 ID=MsaT005466.1.exon2;Parent=MsaT005466.1
Chr1 CDS 81725410 81725440 81725410 ID=cds.MsaT005466.1;Parent=MsaT005466.1
Gene Sequence

>MsaT005466.1

ATGTCGAGTGCAAGGAAAGGCCGAGGCCGCCAAAAGATTGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCGTAACGGGCTCTTCAAGAAGGTCAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTAGTTGTATTCTCGCCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAAAAGATTGGCGATGAGCTGAGCCATTTGCTCAAGGAAACGGAGGCTAAGTTTTGCGAGCTGCATCTCGCATGGCGAGATGCCTAA
Protein sequence

>MsaT005466.1

MSSARKGRGRQKIEMKKMSNESNLQVTFSKRRNGLFKKVSELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNTLDAEKKIGDELSHLLKETEAKFCELHLAWRDA*