AlfalfaGEDB | MsaG005522

M. sativa ssp. caerulea / MsaG005522

KEGG: K04733
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF14380.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005522	XP_039685954.1	94.965	576	29	0	12	587	113	688	0.0	1070

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005522	sp\|Q9C6K9\|LRL11_ARATH	51.351	555	220	11	40	587	115	626	4.63e-168	495

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005522	tr\|A0A396JYS3\|A0A396JYS3_MEDTR	94.965	576	29	0	12	587	113	688	0.0	1070

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG002236	MsaG005522	0.814730	2.294490e-51	4.405251e-49
MsaG005522	MsaG013846	0.807992	6.558340e-50	1.067084e-47
MsaG005522	MsaG015967	0.815040	1.960931e-51	3.794381e-49
MsaG005522	MsaG028760	0.813636	3.992688e-51	7.458012e-49
MsaG005522	MsaG037734	0.805623	2.065116e-49	3.176550e-47
MsaG005522	MsaG032406	0.801796	1.275621e-48	1.796199e-46
MsaG005522	MsaG029980	0.810468	1.943610e-50	3.357277e-48

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005522	MtrunA17_Chr1g0209361	94.965	576	29	0	12	587	113	688	0.0	1070
MsaG005522	MtrunA17_Chr1g0209391	59.197	473	154	10	119	587	207	644	1.72e-179	522
MsaG005522	MtrunA17_Chr1g0209381	59.829	468	164	8	119	582	213	660	3.22e-173	506
MsaG005522	MtrunA17_Chr8g0376061	50.353	566	256	11	18	571	107	659	8.64e-169	495
MsaG005522	MtrunA17_Chr1g0209431	60.880	409	149	5	181	587	276	675	1.79e-166	489
MsaG005522	MtrunA17_Chr7g0251121	48.235	595	228	16	28	576	123	683	6.90e-162	478
MsaG005522	MtrunA17_Chr6g0483931	53.800	500	188	14	87	550	187	679	2.67e-160	474
MsaG005522	MtrunA17_Chr5g0423061	54.299	442	168	7	123	544	189	616	6.47e-153	453
MsaG005522	MtrunA17_Chr6g0467631	53.548	465	195	9	103	554	208	664	2.50e-152	453
MsaG005522	MtrunA17_Chr6g0467601	51.178	467	207	9	104	554	7	468	1.17e-145	429

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005522	AT1G25390.1	51.351	555	220	11	40	587	115	626	4.70e-169	495
MsaG005522	AT1G25390.2	51.351	555	220	11	40	587	115	626	4.70e-169	495
MsaG005522	AT1G18390.2	50.000	570	238	16	12	552	101	652	3.80e-167	491
MsaG005522	AT1G18390.1	55.128	468	172	9	108	552	194	646	3.94e-165	485
MsaG005522	AT5G38210.3	49.534	537	207	11	54	553	158	667	1.69e-163	482
MsaG005522	AT5G38210.2	49.534	537	207	11	54	553	176	685	3.04e-163	482
MsaG005522	AT5G38210.1	50.402	498	193	11	95	553	191	673	6.20e-152	453
MsaG005522	AT1G66880.3	50.928	485	194	9	106	553	187	664	9.02e-150	447
MsaG005522	AT1G66880.2	44.957	585	259	13	24	553	330	906	2.17e-143	438
MsaG005522	AT1G66880.1	44.957	585	259	13	24	553	709	1285	1.59e-139	437

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Find 148 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACACCGTAACTGATAAAT+GGG	0.415386	1:+82367427	MsaT005522.1:CDS
AAATGAACCGAGTTCGGTTG+TGG	0.507368	1:+82356342	MsaT005522.1:CDS
AACAGCACTGGAGGGAGGTG+TGG	0.603250	1:+82356523	MsaT005522.1:CDS
AACTTAGGAGAATAGAAAGT+GGG	0.522117	1:+82367258	MsaT005522.1:CDS
AAGAAGTATTAGATGAACTT+AGG	0.522557	1:+82367243	MsaT005522.1:CDS
AAGAGTGATGTATATAGTTT+TGG	0.361316	1:+82366984	MsaT005522.1:CDS
AAGCTTCCTAGCACTCTGCA+AGG	0.549667	1:+82356295	MsaT005522.1:CDS
AAGTGGGAAAGATGGGGTTG+AGG	0.570604	1:+82367274	MsaT005522.1:CDS
AATAAAGAACTTGGAGATGG+AGG	0.568855	1:+82366372	MsaT005522.1:CDS
AATAGAAAGTGGGAAAGATG+GGG	0.673429	1:+82367268	MsaT005522.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	82347878	82367484	82347878	ID=MsaG005522
Chr1	mRNA	82347878	82367484	82347878	ID=MsaT005522.1;Parent=MsaG005522
Chr1	exon	82347878	82347916	82347878	ID=MsaT005522.1.exon1;Parent=MsaT005522.1
Chr1	CDS	82347878	82347916	82347878	ID=cds.MsaT005522.1;Parent=MsaT005522.1
Chr1	exon	82356184	82356616	82356184	ID=MsaT005522.1.exon2;Parent=MsaT005522.1
Chr1	CDS	82356184	82356616	82356184	ID=cds.MsaT005522.1;Parent=MsaT005522.1
Chr1	exon	82365876	82365911	82365876	ID=MsaT005522.1.exon3;Parent=MsaT005522.1
Chr1	CDS	82365876	82365911	82365876	ID=cds.MsaT005522.1;Parent=MsaT005522.1
Chr1	exon	82366148	82366414	82366148	ID=MsaT005522.1.exon4;Parent=MsaT005522.1
Chr1	CDS	82366148	82366414	82366148	ID=cds.MsaT005522.1;Parent=MsaT005522.1
Chr1	exon	82366496	82367484	82366496	ID=MsaT005522.1.exon5;Parent=MsaT005522.1
Chr1	CDS	82366496	82367484	82366496	ID=cds.MsaT005522.1;Parent=MsaT005522.1

Gene Sequence

>MsaT005522.1

ATGAAGAAAGTTCTTCCTAAAAAAGACAACTTATCTAAGACCAACAAAGATTGTCTTTCACCAACCCAAAACCTCACTTTTCCCAATAACATGTTCTATGTTGCACCTAACCAAAGTGAAGTGAGACTGCTCTATGGATGCAACTCAACAAAGCTTCCTAGCACTCTGCAAGGGAACACAATTGGTTGCTATGCAGAAAATGAACCGAGTTCGGTTGTGGCATTGTATGGTGATGATAAGAATGCAAGCTTGGTGTCAAAGAATTGCAGGGAAGAGGTTGTGATTGCAACGGTGGAAAGTGTTGTGAAAGGAGGGATTGAAGAGTCGCTGAGAAATGGGTTTCGGTTGAATTGGATAGCTAGTGATTGCAATGAATGTAACAGCACTGGAGGGAGGTGTGGCTTTGATAAAGATGTATACAGTTTCAGGTGTTACTGTACTGATAGAGTTCATTCTGCAAAATGTGATACAGTTAAAGGGCTGACTCGGAATGCCAAACTGGGTATAGGTTTGGGGATTGGTATTGGAATCCCAGGCATCTTGTTGATTGGGGCGGTGTTTCTCCTTCGACTATGCAAACGGAAACATGCTATTTCGGTTGGACACTTCCAATCTAGTAACTCTTATTCTGATTCCTCCATAAATCCACGCAGAGAGACTGGTAGTAAATATTTCGGAGTTCCATTATTCTCCTACGATGAGCTTAGAAAAGCAACAAACAATTTTGACCAGAATAAAGAACTTGGAGATGGAGGCTTTGGAACCGTCTACTTTGGGAAACTTCCAGATGGACGTGAGGTTGCTGTCAAGCGTTTATACGAACACAACTATAGGAGAGTAGAACAGTTCATGAATGAAGTCAATATTCTGACAACTTTGCGGCACAAAAATCTTGTGTCCCTCTATGGATGCACTTCACGGCACAGTCGTGAACTACTTCTTGTGTATGAATATATCTCAAATGGCACCATTGCATGTCATCTCCATGGTGAATTGGCCAAGCCCGACTTACTACCATGGTCTATACGAATTAAAATTGCCATAGAGACTGCTAATGCCTTGGCTTATCTCCATGCTTCTGGGATCATTCACCGTGACGTGAAAACCAACAATATACTTCTTGACGGCAATTTTGGTGTTAAAGTTGCAGATTTTGGCCTTTCAAGACTATTCCCCGAGGATGCCACTCATGTCTCCACAGCTCCACAAGGAACACCAGGTTACCTTGACCCCGAGTATCACCAATTTTATCAGCTTACTAGCAAGAGTGATGTATATAGTTTTGGAGTTGTGCTCATTGAGCTAATATCATCAAAGCCTGCTGTTGATATAAACAGAAGTAGGGAAGAGATTAACTTGTCAACTCTAGCCACAAAGAAGATTCAAGAAAGTGCAATTGATGAGCTCGTAGATCCTTCTCTTGGTTTTCATTCAGACAGTGAGGTTAATAGGATGATAGTTTCAGTGGCAGAATTGGCTTTTCAGTGTTTGCAAAGGGACAAAGAGTTGAGACCTTCTATGGAAGAAGTATTAGATGAACTTAGGAGAATAGAAAGTGGGAAAGATGGGGTTGAGGTTGTAGACGAGGCAGATGTTGATGGTGTTGGATCATCACACAGTATTATACAGCCACCACCGGTCTCACCTGAATGGGATGAAGTTGGATTATTGAAGAATGTGAAAATTATGAAGCATCCGTCTTCACCAAACACCGTAACTGATAAATGGGAAAGTATTAATACTACGCCTAACGCCAGTGCTTAA

Protein sequence

>MsaT005522.1

MKKVLPKKDNLSKTNKDCLSPTQNLTFPNNMFYVAPNQSEVRLLYGCNSTKLPSTLQGNTIGCYAENEPSSVVALYGDDKNASLVSKNCREEVVIATVESVVKGGIEESLRNGFRLNWIASDCNECNSTGGRCGFDKDVYSFRCYCTDRVHSAKCDTVKGLTRNAKLGIGLGIGIGIPGILLIGAVFLLRLCKRKHAISVGHFQSSNSYSDSSINPRRETGSKYFGVPLFSYDELRKATNNFDQNKELGDGGFGTVYFGKLPDGREVAVKRLYEHNYRRVEQFMNEVNILTTLRHKNLVSLYGCTSRHSRELLLVYEYISNGTIACHLHGELAKPDLLPWSIRIKIAIETANALAYLHASGIIHRDVKTNNILLDGNFGVKVADFGLSRLFPEDATHVSTAPQGTPGYLDPEYHQFYQLTSKSDVYSFGVVLIELISSKPAVDINRSREEINLSTLATKKIQESAIDELVDPSLGFHSDSEVNRMIVSVAELAFQCLQRDKELRPSMEEVLDELRRIESGKDGVEVVDEADVDGVGSSHSIIQPPPVSPEWDEVGLLKNVKIMKHPSSPNTVTDKWESINTTPNASA*