AlfalfaGEDB | MsaG005565

M. sativa ssp. caerulea / MsaG005565

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	XP_013470179.1	95.671	231	10	0	1	231	1	231	3.81e-163	460

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	sp\|Q9M886\|LBD41_ARATH	40.529	227	122	5	1	225	1	216	2.75e-52	172

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	tr\|G7ZZB8\|G7ZZB8_MEDTR	95.671	231	10	0	1	231	1	231	1.82e-163	460

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005565	TF	LOB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001930	MsaG005565	0.821070	8.621100e-53	1.950559e-50
MsaG002117	MsaG005565	0.815066	1.935189e-51	3.747078e-49
MsaG003906	MsaG005565	0.821443	7.078661e-53	1.617427e-50
MsaG005562	MsaG005565	0.906480	3.367645e-80	2.539841e-76
MsaG005565	MsaG006039	0.843203	3.017716e-58	1.304243e-55
MsaG005565	MsaG006323	0.804477	3.578530e-49	5.359728e-47
MsaG005565	MsaG008248	0.824453	1.418436e-53	3.515193e-51
MsaG005565	MsaG017975	0.806293	1.495478e-49	2.337062e-47
MsaG005565	MsaG019110	0.818614	3.119930e-52	6.616424e-50
MsaG005565	MsaG019112	0.814893	2.112485e-51	4.072619e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	MtrunA17_Chr6g0469271	93.939	231	14	0	1	231	1	231	1.40e-164	453
MsaG005565	MtrunA17_Chr6g0470631	90.476	231	22	0	1	231	1	231	1.86e-158	438
MsaG005565	MtrunA17_Chr6g0470651	88.745	231	26	0	1	231	1	231	2.34e-156	432
MsaG005565	MtrunA17_Chr1g0209841	91.342	231	10	1	1	231	1	221	2.44e-156	432
MsaG005565	MtrunA17_Chr6g0457431	55.422	166	56	6	1	160	1	154	4.58e-60	186
MsaG005565	MtrunA17_Chr7g0215281	44.053	227	109	7	1	223	1	213	8.42e-56	180
MsaG005565	MtrunA17_Chr4g0053911	56.303	119	48	2	3	119	1	117	1.65e-46	154
MsaG005565	MtrunA17_Chr5g0401401	44.970	169	82	5	3	165	1	164	5.49e-45	150
MsaG005565	MtrunA17_Chr1g0207471	44.882	127	63	2	3	124	1	125	7.99e-36	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	AT3G02550.1	40.529	227	122	5	1	225	1	216	2.80e-53	172
MsaG005565	AT1G68510.1	55.102	147	54	3	1	145	1	137	3.07e-53	171
MsaG005565	AT1G67100.1	54.861	144	57	3	1	144	1	136	5.96e-50	163
MsaG005565	AT3G49940.1	53.659	123	55	1	3	125	1	121	1.41e-45	152
MsaG005565	AT5G67420.2	55.963	109	46	1	3	111	1	107	1.14e-43	147
MsaG005565	AT5G67420.1	55.963	109	46	1	3	111	1	107	1.14e-43	147
MsaG005565	AT4G37540.1	57.798	109	44	1	3	111	1	107	1.50e-43	147

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Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCAATTCAAAAGAGC+TGG	0.446487	1:+82906292	MsaT005565.1:CDS
AAACTCAATTCAAAAGAGCT+GGG	0.590181	1:+82906293	MsaT005565.1:CDS
AAATTGGGGAGACTTCATCA+AGG	0.644743	1:+82906398	MsaT005565.1:CDS
AAATTTGGCAAGGAAGAGGG+TGG	0.680062	1:-82905627	None:intergenic
AACCTATGATATACGCCATG+TGG	0.679816	1:+82906240	MsaT005565.1:CDS
AAGAATACCAACATGGAAAT+TGG	0.166066	1:+82906382	MsaT005565.1:CDS
AAGCCAAGCGCCCCATATGT+GGG	0.589682	1:-82906076	None:intergenic
AATCAAAATCATAATCCACC+AGG	0.664735	1:+82905692	MsaT005565.1:CDS
AATCATCACTACAACCTTTG+CGG	0.504650	1:-82905550	None:intergenic
AATCCCACATATGGGGCGCT+TGG	0.518707	1:+82906073	MsaT005565.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	82905518	82906528	82905518	ID=MsaG005565
Chr1	mRNA	82905518	82906528	82905518	ID=MsaT005565.1;Parent=MsaG005565
Chr1	exon	82905518	82905713	82905518	ID=MsaT005565.1.exon1;Parent=MsaT005565.1
Chr1	CDS	82905518	82905713	82905518	ID=cds.MsaT005565.1;Parent=MsaT005565.1
Chr1	exon	82906029	82906528	82906029	ID=MsaT005565.1.exon2;Parent=MsaT005565.1
Chr1	CDS	82906029	82906528	82906029	ID=cds.MsaT005565.1;Parent=MsaT005565.1

Gene Sequence

>MsaT005565.1

ATGAAGTTGAGTTGCAATGGGTGTCGTGTGCTCCGCAAAGGTTGTAGTGATGATTGTATCATCAAGCCCTGCCTTGAGTGGATCAGTTGCCCTGAATCCCAAGGGCATGCCACCCTCTTCCTTGCCAAATTTTATGGCCGAACCGGTTTGCTCAATCTCCTCACCAATGCTACCAATCAAAATCATAATCCACCAGCTGTGTTTAAATCATTGTTGTACGAGGCAGCTGGTAGATTGGTGAATCCCACATATGGGGCGCTTGGCTTATTTTGGACAGCGAATTGGAGTCGTTGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCGAATATTAATGACAGTTTTACAATGATTGATGGGCAGACATCATCAGGTACACTCAATGCTGAAAATCATGTTCTGCCCAAAACCTATGATATACGCCATGTGGCAAAAGGTACCAATGTGGACATCAAAGGGAAAACTCAATTCAAAAGAGCTGGGCAAGTTCTGAAGCCCAAGCCACGAGTTGGTTCAGTCGACTCGGCTACAATGTTGAAATCCCTTTTGAAGAATACCAACATGGAAATTGGGGAGACTTCATCAAGGGTTCAAACAGAGAAAATTAATGAAGCTGCTGAGAATCAAGTGAATTTGGAACTCACTCTTGGCTTTGATTGCCAATCAACTAAGGGCAAGAAAATATTAGATAAATGA

Protein sequence

>MsaT005565.1

MKLSCNGCRVLRKGCSDDCIIKPCLEWISCPESQGHATLFLAKFYGRTGLLNLLTNATNQNHNPPAVFKSLLYEAAGRLVNPTYGALGLFWTANWSRCEAAVEAVLTGSNINDSFTMIDGQTSSGTLNAENHVLPKTYDIRHVAKGTNVDIKGKTQFKRAGQVLKPKPRVGSVDSATMLKSLLKNTNMEIGETSSRVQTEKINEAAENQVNLELTLGFDCQSTKGKKILDK*