AlfalfaGEDB | MsaG005565

M. sativa ssp. caerulea / MsaG005565

KEGG: -
GO: -
PFAM: PF03195.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	XP_013470179.1	95.671	231	10	0	1	231	1	231	3.81e-163	460

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	sp\|Q9M886\|LBD41_ARATH	40.529	227	122	5	1	225	1	216	2.75e-52	172

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	tr\|G7ZZB8\|G7ZZB8_MEDTR	95.671	231	10	0	1	231	1	231	1.82e-163	460

TFs/TRs:

Gene ID	Type	Classification
MsaG005565	TF	LOB

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001930	MsaG005565	0.821070	8.621100e-53	1.950559e-50
MsaG002117	MsaG005565	0.815066	1.935189e-51	3.747078e-49
MsaG003906	MsaG005565	0.821443	7.078661e-53	1.617427e-50
MsaG005562	MsaG005565	0.906480	3.367645e-80	2.539841e-76
MsaG005565	MsaG006039	0.843203	3.017716e-58	1.304243e-55
MsaG005565	MsaG006323	0.804477	3.578530e-49	5.359728e-47
MsaG005565	MsaG008248	0.824453	1.418436e-53	3.515193e-51
MsaG005565	MsaG017975	0.806293	1.495478e-49	2.337062e-47
MsaG005565	MsaG019110	0.818614	3.119930e-52	6.616424e-50
MsaG005565	MsaG019112	0.814893	2.112485e-51	4.072619e-49
MsaG005565	MsaG019113	0.833896	7.442723e-56	2.412071e-53
MsaG005565	MsaG023895	0.826072	5.895593e-54	1.527758e-51
MsaG005565	MsaG025760	0.806478	1.367464e-49	2.146389e-47
MsaG005565	MsaG027224	0.807364	8.904116e-50	1.427062e-47
MsaG005565	MsaG027839	0.803562	5.533396e-49	8.113958e-47
MsaG005565	MsaG029442	0.811522	1.151416e-50	2.040791e-48
MsaG005565	MsaG029613	0.810219	2.198039e-50	3.773634e-48
MsaG005565	MsaG019886	0.815895	1.267929e-51	2.507199e-49
MsaG005565	MsaG033278	0.805104	2.650409e-49	4.027874e-47
MsaG005565	MsaG033665	0.824625	1.292120e-53	3.217174e-51
MsaG005565	MsaG032451	0.815004	1.996494e-51	3.859877e-49
MsaG005565	MsaG031429	0.823764	2.054470e-53	4.997159e-51
MsaG005565	MsaG047175	0.894008	8.262636e-75	3.015938e-71

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	MtrunA17_Chr6g0469271	93.939	231	14	0	1	231	1	231	1.40e-164	453
MsaG005565	MtrunA17_Chr6g0470631	90.476	231	22	0	1	231	1	231	1.86e-158	438
MsaG005565	MtrunA17_Chr6g0470651	88.745	231	26	0	1	231	1	231	2.34e-156	432
MsaG005565	MtrunA17_Chr1g0209841	91.342	231	10	1	1	231	1	221	2.44e-156	432
MsaG005565	MtrunA17_Chr6g0457431	55.422	166	56	6	1	160	1	154	4.58e-60	186
MsaG005565	MtrunA17_Chr7g0215281	44.053	227	109	7	1	223	1	213	8.42e-56	180
MsaG005565	MtrunA17_Chr4g0053911	56.303	119	48	2	3	119	1	117	1.65e-46	154
MsaG005565	MtrunA17_Chr5g0401401	44.970	169	82	5	3	165	1	164	5.49e-45	150
MsaG005565	MtrunA17_Chr1g0207471	44.882	127	63	2	3	124	1	125	7.99e-36	125

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005565	AT3G02550.1	40.529	227	122	5	1	225	1	216	2.80e-53	172
MsaG005565	AT1G68510.1	55.102	147	54	3	1	145	1	137	3.07e-53	171
MsaG005565	AT1G67100.1	54.861	144	57	3	1	144	1	136	5.96e-50	163
MsaG005565	AT3G49940.1	53.659	123	55	1	3	125	1	121	1.41e-45	152
MsaG005565	AT5G67420.2	55.963	109	46	1	3	111	1	107	1.14e-43	147
MsaG005565	AT5G67420.1	55.963	109	46	1	3	111	1	107	1.14e-43	147
MsaG005565	AT4G37540.1	57.798	109	44	1	3	111	1	107	1.50e-43	147

Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
GTGGCATGCCCTTGGGATTC+AGG	0.157225	1:-82905608	None:intergenic
ATGGGGCGCTTGGCTTATTT+TGG	0.165756	1:+82906083	MsaT005565.1:CDS
AAGAATACCAACATGGAAAT+TGG	0.166066	1:+82906382	MsaT005565.1:CDS
ACCGGTTCGGCCATAAAATT+TGG	0.172606	1:-82905642	None:intergenic
ATGGCGTATATCATAGGTTT+TGG	0.254539	1:-82906236	None:intergenic
TGCTGAGAATCAAGTGAATT+TGG	0.279066	1:+82906447	MsaT005565.1:CDS
CCATGTTGGTATTCTTCAAA+AGG	0.367139	1:-82906375	None:intergenic
AGAATACCAACATGGAAATT+GGG	0.374565	1:+82906383	MsaT005565.1:CDS
TGCCACATGGCGTATATCAT+AGG	0.386203	1:-82906242	None:intergenic
CTTTGATTGCCAATCAACTA+AGG	0.392207	1:+82906483	MsaT005565.1:CDS
CATAAAATTTGGCAAGGAAG+AGG	0.404166	1:-82905631	None:intergenic
GACTGAACCAACTCGTGGCT+TGG	0.415502	1:-82906329	None:intergenic
ACTGAACCAACTCGTGGCTT+GGG	0.424285	1:-82906328	None:intergenic
GTGAATTTGGAACTCACTCT+TGG	0.424885	1:+82906460	MsaT005565.1:CDS
GGAAGAGGGTGGCATGCCCT+TGG	0.443110	1:-82905616	None:intergenic
GCAACTGATCCACTCAAGGC+AGG	0.443950	1:-82905585	None:intergenic
TGGCATGCCCTTGGGATTCA+GGG	0.444879	1:-82905607	None:intergenic
AAAACTCAATTCAAAAGAGC+TGG	0.446487	1:+82906292	MsaT005565.1:CDS
ATTGATGGGCAGACATCATC+AGG	0.455052	1:+82906184	MsaT005565.1:CDS
GCAGTTGAAGCTGTGCTGAC+TGG	0.456964	1:+82906133	MsaT005565.1:CDS
AGATTGGTGAATCCCACATA+TGG	0.458590	1:+82906064	MsaT005565.1:CDS
TAAGCCAAGCGCCCCATATG+TGG	0.471835	1:-82906077	None:intergenic
CATGTTGGTATTCTTCAAAA+GGG	0.477135	1:-82906374	None:intergenic
GAAGAGGGTGGCATGCCCTT+GGG	0.479104	1:-82905615	None:intergenic
GGAGATTGAGCAAACCGGTT+CGG	0.494518	1:-82905655	None:intergenic
AATCATCACTACAACCTTTG+CGG	0.504650	1:-82905550	None:intergenic
GATTGGTGAATCCCACATAT+GGG	0.508471	1:+82906065	MsaT005565.1:CDS
GATATACGCCATGTGGCAAA+AGG	0.516720	1:+82906247	MsaT005565.1:CDS
AATCCCACATATGGGGCGCT+TGG	0.518707	1:+82906073	MsaT005565.1:CDS
GGTGAGGAGATTGAGCAAAC+CGG	0.524508	1:-82905660	None:intergenic
TCATCAAGCCCTGCCTTGAG+TGG	0.538225	1:+82905576	MsaT005565.1:CDS
GTACCAATGTGGACATCAAA+GGG	0.546635	1:+82906269	MsaT005565.1:CDS
TTTCCCTTTGATGTCCACAT+TGG	0.551024	1:-82906272	None:intergenic
GGTACCAATGTGGACATCAA+AGG	0.551224	1:+82906268	MsaT005565.1:CDS
GTACGAGGCAGCTGGTAGAT+TGG	0.560594	1:+82906048	MsaT005565.1:CDS
GAATACCAACATGGAAATTG+GGG	0.561319	1:+82906384	MsaT005565.1:CDS
CTGAAGCCCAAGCCACGAGT+TGG	0.576033	1:+82906322	MsaT005565.1:CDS
AGTCTCCCCAATTTCCATGT+TGG	0.576332	1:-82906389	None:intergenic
ATAAAATTTGGCAAGGAAGA+GGG	0.578936	1:-82905630	None:intergenic
TTCGGCCATAAAATTTGGCA+AGG	0.579687	1:-82905637	None:intergenic
TAATGAAGTTGAGTTGCAAT+GGG	0.583194	1:+82905516	None:intergenic
TTTGATTGCCAATCAACTAA+GGG	0.586746	1:+82906484	MsaT005565.1:CDS
AAGCCAAGCGCCCCATATGT+GGG	0.589682	1:-82906076	None:intergenic
AAACTCAATTCAAAAGAGCT+GGG	0.590181	1:+82906293	MsaT005565.1:CDS
CAACTGATCCACTCAAGGCA+GGG	0.595554	1:-82905584	None:intergenic
ATCAGTTGCCCTGAATCCCA+AGG	0.599742	1:+82905599	MsaT005565.1:CDS
ATAATGAAGTTGAGTTGCAA+TGG	0.608858	1:+82905515	None:intergenic
TCATTGTTGTACGAGGCAGC+TGG	0.614180	1:+82906040	MsaT005565.1:CDS
ACGAGTTGGTTCAGTCGACT+CGG	0.622355	1:+82906336	MsaT005565.1:CDS
CAGGGCAACTGATCCACTCA+AGG	0.625744	1:-82905589	None:intergenic
GGGTGTCGTGTGCTCCGCAA+AGG	0.627575	1:+82905536	MsaT005565.1:CDS
ATTGGTGAATCCCACATATG+GGG	0.640018	1:+82906066	MsaT005565.1:CDS
TTTGATTGGTAGCATTGGTG+AGG	0.643249	1:-82905676	None:intergenic
AAATTGGGGAGACTTCATCA+AGG	0.644743	1:+82906398	MsaT005565.1:CDS
AATTGGGGAGACTTCATCAA+GGG	0.644822	1:+82906399	MsaT005565.1:CDS
AATCAAAATCATAATCCACC+AGG	0.664735	1:+82905692	MsaT005565.1:CDS
TCAGTTGCCCTGAATCCCAA+GGG	0.669183	1:+82905600	MsaT005565.1:CDS
GAGTCGACTGAACCAACTCG+TGG	0.679210	1:-82906334	None:intergenic
AACCTATGATATACGCCATG+TGG	0.679816	1:+82906240	MsaT005565.1:CDS
AAATTTGGCAAGGAAGAGGG+TGG	0.680062	1:-82905627	None:intergenic
GTTTAAATCATTGTTGTACG+AGG	0.684324	1:+82906033	MsaT005565.1:CDS
TGTGGCAAAAGGTACCAATG+TGG	0.731996	1:+82906258	MsaT005565.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	82905518	82906528	82905518	ID=MsaG005565
Chr1	mRNA	82905518	82906528	82905518	ID=MsaT005565.1;Parent=MsaG005565
Chr1	exon	82905518	82905713	82905518	ID=MsaT005565.1.exon1;Parent=MsaT005565.1
Chr1	CDS	82905518	82905713	82905518	ID=cds.MsaT005565.1;Parent=MsaT005565.1
Chr1	exon	82906029	82906528	82906029	ID=MsaT005565.1.exon2;Parent=MsaT005565.1
Chr1	CDS	82906029	82906528	82906029	ID=cds.MsaT005565.1;Parent=MsaT005565.1

Gene Sequence

>MsaT005565.1

ATGAAGTTGAGTTGCAATGGGTGTCGTGTGCTCCGCAAAGGTTGTAGTGATGATTGTATCATCAAGCCCTGCCTTGAGTGGATCAGTTGCCCTGAATCCCAAGGGCATGCCACCCTCTTCCTTGCCAAATTTTATGGCCGAACCGGTTTGCTCAATCTCCTCACCAATGCTACCAATCAAAATCATAATCCACCAGCTGTGTTTAAATCATTGTTGTACGAGGCAGCTGGTAGATTGGTGAATCCCACATATGGGGCGCTTGGCTTATTTTGGACAGCGAATTGGAGTCGTTGTGAAGCTGCAGTTGAAGCTGTGCTGACTGGATCGAATATTAATGACAGTTTTACAATGATTGATGGGCAGACATCATCAGGTACACTCAATGCTGAAAATCATGTTCTGCCCAAAACCTATGATATACGCCATGTGGCAAAAGGTACCAATGTGGACATCAAAGGGAAAACTCAATTCAAAAGAGCTGGGCAAGTTCTGAAGCCCAAGCCACGAGTTGGTTCAGTCGACTCGGCTACAATGTTGAAATCCCTTTTGAAGAATACCAACATGGAAATTGGGGAGACTTCATCAAGGGTTCAAACAGAGAAAATTAATGAAGCTGCTGAGAATCAAGTGAATTTGGAACTCACTCTTGGCTTTGATTGCCAATCAACTAAGGGCAAGAAAATATTAGATAAATGA

Protein sequence

>MsaT005565.1

MKLSCNGCRVLRKGCSDDCIIKPCLEWISCPESQGHATLFLAKFYGRTGLLNLLTNATNQNHNPPAVFKSLLYEAAGRLVNPTYGALGLFWTANWSRCEAAVEAVLTGSNINDSFTMIDGQTSSGTLNAENHVLPKTYDIRHVAKGTNVDIKGKTQFKRAGQVLKPKPRVGSVDSATMLKSLLKNTNMEIGETSSRVQTEKINEAAENQVNLELTLGFDCQSTKGKKILDK*