Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005565 | XP_013470179.1 | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 3.81e-163 | 460 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005565 | sp|Q9M886|LBD41_ARATH | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.75e-52 | 172 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005565 | tr|G7ZZB8|G7ZZB8_MEDTR | 95.671 | 231 | 10 | 0 | 1 | 231 | 1 | 231 | 1.82e-163 | 460 |
Gene ID | Type | Classification |
---|---|---|
MsaG005565 | TF | LOB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG001930 | MsaG005565 | 0.821070 | 8.621100e-53 | 1.950559e-50 |
MsaG002117 | MsaG005565 | 0.815066 | 1.935189e-51 | 3.747078e-49 |
MsaG003906 | MsaG005565 | 0.821443 | 7.078661e-53 | 1.617427e-50 |
MsaG005562 | MsaG005565 | 0.906480 | 3.367645e-80 | 2.539841e-76 |
MsaG005565 | MsaG006039 | 0.843203 | 3.017716e-58 | 1.304243e-55 |
MsaG005565 | MsaG006323 | 0.804477 | 3.578530e-49 | 5.359728e-47 |
MsaG005565 | MsaG008248 | 0.824453 | 1.418436e-53 | 3.515193e-51 |
MsaG005565 | MsaG017975 | 0.806293 | 1.495478e-49 | 2.337062e-47 |
MsaG005565 | MsaG019110 | 0.818614 | 3.119930e-52 | 6.616424e-50 |
MsaG005565 | MsaG019112 | 0.814893 | 2.112485e-51 | 4.072619e-49 |
MsaG005565 | MsaG019113 | 0.833896 | 7.442723e-56 | 2.412071e-53 |
MsaG005565 | MsaG023895 | 0.826072 | 5.895593e-54 | 1.527758e-51 |
MsaG005565 | MsaG025760 | 0.806478 | 1.367464e-49 | 2.146389e-47 |
MsaG005565 | MsaG027224 | 0.807364 | 8.904116e-50 | 1.427062e-47 |
MsaG005565 | MsaG027839 | 0.803562 | 5.533396e-49 | 8.113958e-47 |
MsaG005565 | MsaG029442 | 0.811522 | 1.151416e-50 | 2.040791e-48 |
MsaG005565 | MsaG029613 | 0.810219 | 2.198039e-50 | 3.773634e-48 |
MsaG005565 | MsaG019886 | 0.815895 | 1.267929e-51 | 2.507199e-49 |
MsaG005565 | MsaG033278 | 0.805104 | 2.650409e-49 | 4.027874e-47 |
MsaG005565 | MsaG033665 | 0.824625 | 1.292120e-53 | 3.217174e-51 |
MsaG005565 | MsaG032451 | 0.815004 | 1.996494e-51 | 3.859877e-49 |
MsaG005565 | MsaG031429 | 0.823764 | 2.054470e-53 | 4.997159e-51 |
MsaG005565 | MsaG047175 | 0.894008 | 8.262636e-75 | 3.015938e-71 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005565 | MtrunA17_Chr6g0469271 | 93.939 | 231 | 14 | 0 | 1 | 231 | 1 | 231 | 1.40e-164 | 453 |
MsaG005565 | MtrunA17_Chr6g0470631 | 90.476 | 231 | 22 | 0 | 1 | 231 | 1 | 231 | 1.86e-158 | 438 |
MsaG005565 | MtrunA17_Chr6g0470651 | 88.745 | 231 | 26 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
MsaG005565 | MtrunA17_Chr1g0209841 | 91.342 | 231 | 10 | 1 | 1 | 231 | 1 | 221 | 2.44e-156 | 432 |
MsaG005565 | MtrunA17_Chr6g0457431 | 55.422 | 166 | 56 | 6 | 1 | 160 | 1 | 154 | 4.58e-60 | 186 |
MsaG005565 | MtrunA17_Chr7g0215281 | 44.053 | 227 | 109 | 7 | 1 | 223 | 1 | 213 | 8.42e-56 | 180 |
MsaG005565 | MtrunA17_Chr4g0053911 | 56.303 | 119 | 48 | 2 | 3 | 119 | 1 | 117 | 1.65e-46 | 154 |
MsaG005565 | MtrunA17_Chr5g0401401 | 44.970 | 169 | 82 | 5 | 3 | 165 | 1 | 164 | 5.49e-45 | 150 |
MsaG005565 | MtrunA17_Chr1g0207471 | 44.882 | 127 | 63 | 2 | 3 | 124 | 1 | 125 | 7.99e-36 | 125 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005565 | AT3G02550.1 | 40.529 | 227 | 122 | 5 | 1 | 225 | 1 | 216 | 2.80e-53 | 172 |
MsaG005565 | AT1G68510.1 | 55.102 | 147 | 54 | 3 | 1 | 145 | 1 | 137 | 3.07e-53 | 171 |
MsaG005565 | AT1G67100.1 | 54.861 | 144 | 57 | 3 | 1 | 144 | 1 | 136 | 5.96e-50 | 163 |
MsaG005565 | AT3G49940.1 | 53.659 | 123 | 55 | 1 | 3 | 125 | 1 | 121 | 1.41e-45 | 152 |
MsaG005565 | AT5G67420.2 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
MsaG005565 | AT5G67420.1 | 55.963 | 109 | 46 | 1 | 3 | 111 | 1 | 107 | 1.14e-43 | 147 |
MsaG005565 | AT4G37540.1 | 57.798 | 109 | 44 | 1 | 3 | 111 | 1 | 107 | 1.50e-43 | 147 |
Find 62 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GTGGCATGCCCTTGGGATTC+AGG | 0.157225 | 1:-82905608 | None:intergenic |
ATGGGGCGCTTGGCTTATTT+TGG | 0.165756 | 1:+82906083 | MsaT005565.1:CDS |
AAGAATACCAACATGGAAAT+TGG | 0.166066 | 1:+82906382 | MsaT005565.1:CDS |
ACCGGTTCGGCCATAAAATT+TGG | 0.172606 | 1:-82905642 | None:intergenic |
ATGGCGTATATCATAGGTTT+TGG | 0.254539 | 1:-82906236 | None:intergenic |
TGCTGAGAATCAAGTGAATT+TGG | 0.279066 | 1:+82906447 | MsaT005565.1:CDS |
CCATGTTGGTATTCTTCAAA+AGG | 0.367139 | 1:-82906375 | None:intergenic |
AGAATACCAACATGGAAATT+GGG | 0.374565 | 1:+82906383 | MsaT005565.1:CDS |
TGCCACATGGCGTATATCAT+AGG | 0.386203 | 1:-82906242 | None:intergenic |
CTTTGATTGCCAATCAACTA+AGG | 0.392207 | 1:+82906483 | MsaT005565.1:CDS |
CATAAAATTTGGCAAGGAAG+AGG | 0.404166 | 1:-82905631 | None:intergenic |
GACTGAACCAACTCGTGGCT+TGG | 0.415502 | 1:-82906329 | None:intergenic |
ACTGAACCAACTCGTGGCTT+GGG | 0.424285 | 1:-82906328 | None:intergenic |
GTGAATTTGGAACTCACTCT+TGG | 0.424885 | 1:+82906460 | MsaT005565.1:CDS |
GGAAGAGGGTGGCATGCCCT+TGG | 0.443110 | 1:-82905616 | None:intergenic |
GCAACTGATCCACTCAAGGC+AGG | 0.443950 | 1:-82905585 | None:intergenic |
TGGCATGCCCTTGGGATTCA+GGG | 0.444879 | 1:-82905607 | None:intergenic |
AAAACTCAATTCAAAAGAGC+TGG | 0.446487 | 1:+82906292 | MsaT005565.1:CDS |
ATTGATGGGCAGACATCATC+AGG | 0.455052 | 1:+82906184 | MsaT005565.1:CDS |
GCAGTTGAAGCTGTGCTGAC+TGG | 0.456964 | 1:+82906133 | MsaT005565.1:CDS |
AGATTGGTGAATCCCACATA+TGG | 0.458590 | 1:+82906064 | MsaT005565.1:CDS |
TAAGCCAAGCGCCCCATATG+TGG | 0.471835 | 1:-82906077 | None:intergenic |
CATGTTGGTATTCTTCAAAA+GGG | 0.477135 | 1:-82906374 | None:intergenic |
GAAGAGGGTGGCATGCCCTT+GGG | 0.479104 | 1:-82905615 | None:intergenic |
GGAGATTGAGCAAACCGGTT+CGG | 0.494518 | 1:-82905655 | None:intergenic |
AATCATCACTACAACCTTTG+CGG | 0.504650 | 1:-82905550 | None:intergenic |
GATTGGTGAATCCCACATAT+GGG | 0.508471 | 1:+82906065 | MsaT005565.1:CDS |
GATATACGCCATGTGGCAAA+AGG | 0.516720 | 1:+82906247 | MsaT005565.1:CDS |
AATCCCACATATGGGGCGCT+TGG | 0.518707 | 1:+82906073 | MsaT005565.1:CDS |
GGTGAGGAGATTGAGCAAAC+CGG | 0.524508 | 1:-82905660 | None:intergenic |
TCATCAAGCCCTGCCTTGAG+TGG | 0.538225 | 1:+82905576 | MsaT005565.1:CDS |
GTACCAATGTGGACATCAAA+GGG | 0.546635 | 1:+82906269 | MsaT005565.1:CDS |
TTTCCCTTTGATGTCCACAT+TGG | 0.551024 | 1:-82906272 | None:intergenic |
GGTACCAATGTGGACATCAA+AGG | 0.551224 | 1:+82906268 | MsaT005565.1:CDS |
GTACGAGGCAGCTGGTAGAT+TGG | 0.560594 | 1:+82906048 | MsaT005565.1:CDS |
GAATACCAACATGGAAATTG+GGG | 0.561319 | 1:+82906384 | MsaT005565.1:CDS |
CTGAAGCCCAAGCCACGAGT+TGG | 0.576033 | 1:+82906322 | MsaT005565.1:CDS |
AGTCTCCCCAATTTCCATGT+TGG | 0.576332 | 1:-82906389 | None:intergenic |
ATAAAATTTGGCAAGGAAGA+GGG | 0.578936 | 1:-82905630 | None:intergenic |
TTCGGCCATAAAATTTGGCA+AGG | 0.579687 | 1:-82905637 | None:intergenic |
TAATGAAGTTGAGTTGCAAT+GGG | 0.583194 | 1:+82905516 | None:intergenic |
TTTGATTGCCAATCAACTAA+GGG | 0.586746 | 1:+82906484 | MsaT005565.1:CDS |
AAGCCAAGCGCCCCATATGT+GGG | 0.589682 | 1:-82906076 | None:intergenic |
AAACTCAATTCAAAAGAGCT+GGG | 0.590181 | 1:+82906293 | MsaT005565.1:CDS |
CAACTGATCCACTCAAGGCA+GGG | 0.595554 | 1:-82905584 | None:intergenic |
ATCAGTTGCCCTGAATCCCA+AGG | 0.599742 | 1:+82905599 | MsaT005565.1:CDS |
ATAATGAAGTTGAGTTGCAA+TGG | 0.608858 | 1:+82905515 | None:intergenic |
TCATTGTTGTACGAGGCAGC+TGG | 0.614180 | 1:+82906040 | MsaT005565.1:CDS |
ACGAGTTGGTTCAGTCGACT+CGG | 0.622355 | 1:+82906336 | MsaT005565.1:CDS |
CAGGGCAACTGATCCACTCA+AGG | 0.625744 | 1:-82905589 | None:intergenic |
GGGTGTCGTGTGCTCCGCAA+AGG | 0.627575 | 1:+82905536 | MsaT005565.1:CDS |
ATTGGTGAATCCCACATATG+GGG | 0.640018 | 1:+82906066 | MsaT005565.1:CDS |
TTTGATTGGTAGCATTGGTG+AGG | 0.643249 | 1:-82905676 | None:intergenic |
AAATTGGGGAGACTTCATCA+AGG | 0.644743 | 1:+82906398 | MsaT005565.1:CDS |
AATTGGGGAGACTTCATCAA+GGG | 0.644822 | 1:+82906399 | MsaT005565.1:CDS |
AATCAAAATCATAATCCACC+AGG | 0.664735 | 1:+82905692 | MsaT005565.1:CDS |
TCAGTTGCCCTGAATCCCAA+GGG | 0.669183 | 1:+82905600 | MsaT005565.1:CDS |
GAGTCGACTGAACCAACTCG+TGG | 0.679210 | 1:-82906334 | None:intergenic |
AACCTATGATATACGCCATG+TGG | 0.679816 | 1:+82906240 | MsaT005565.1:CDS |
AAATTTGGCAAGGAAGAGGG+TGG | 0.680062 | 1:-82905627 | None:intergenic |
GTTTAAATCATTGTTGTACG+AGG | 0.684324 | 1:+82906033 | MsaT005565.1:CDS |
TGTGGCAAAAGGTACCAATG+TGG | 0.731996 | 1:+82906258 | MsaT005565.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 82905518 | 82906528 | 82905518 | ID=MsaG005565 |
Chr1 | mRNA | 82905518 | 82906528 | 82905518 | ID=MsaT005565.1;Parent=MsaG005565 |
Chr1 | exon | 82905518 | 82905713 | 82905518 | ID=MsaT005565.1.exon1;Parent=MsaT005565.1 |
Chr1 | CDS | 82905518 | 82905713 | 82905518 | ID=cds.MsaT005565.1;Parent=MsaT005565.1 |
Chr1 | exon | 82906029 | 82906528 | 82906029 | ID=MsaT005565.1.exon2;Parent=MsaT005565.1 |
Chr1 | CDS | 82906029 | 82906528 | 82906029 | ID=cds.MsaT005565.1;Parent=MsaT005565.1 |
Gene Sequence |
Protein sequence |