AlfalfaGEDB | MsaG005599

M. sativa ssp. caerulea / MsaG005599

KEGG: K14431
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009909 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048580 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000026 GO:2000112 GO:2000241 GO:2001141
PFAM: PF00170.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005599	XP_004497113.1	82.176	432	63	8	1	423	1	427	0.0	681

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005599	sp\|Q9SX27\|PAN_ARATH	53.390	472	145	9	3	422	4	452	2.00e-145	424

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005599	tr\|A0A1S2XZY6\|A0A1S2XZY6_CICAR	82.176	432	63	8	1	423	1	427	0.0	681

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005599	TF	bZIP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG005599	MsaG005600	0.835516	2.924591e-56	9.949114e-54
MsaG005599	MsaG016540	0.808695	4.652015e-50	7.698450e-48
MsaG005599	MsaG017355	0.805098	2.657572e-49	4.038214e-47
MsaG005599	MsaG044622	0.814467	2.622326e-51	5.001558e-49

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005599	MtrunA17_Chr1g0210151	90.751	346	23	3	82	423	1	341	0.0	611
MsaG005599	MtrunA17_Chr5g0422771	56.624	468	153	13	1	422	1	464	3.72e-166	474
MsaG005599	MtrunA17_Chr7g0256211	51.408	426	179	6	23	422	29	452	4.57e-142	413
MsaG005599	MtrunA17_Chr8g0353501	61.671	347	114	7	81	422	134	466	9.02e-142	412
MsaG005599	MtrunA17_Chr3g0093451	88.000	200	14	3	105	294	10	209	6.24e-125	360
MsaG005599	MtrunA17_Chr1g0174701	47.222	360	179	5	71	422	150	506	1.19e-109	332
MsaG005599	MtrunA17_Chr7g0258321	50.464	323	143	6	117	422	141	463	3.18e-108	327
MsaG005599	MtrunA17_Chr3g0124601	54.545	286	124	3	140	422	79	361	1.22e-102	309
MsaG005599	MtrunA17_Chr2g0321431	52.448	286	123	5	140	422	194	469	7.17e-102	311
MsaG005599	MtrunA17_Chr4g0026401	50.502	299	136	4	125	422	174	461	9.72e-100	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005599	AT1G68640.1	53.390	472	145	9	3	422	4	452	2.03e-146	424
MsaG005599	AT5G06950.2	63.057	314	105	7	116	422	21	330	1.86e-131	382
MsaG005599	AT5G06950.4	63.057	314	105	7	116	422	21	330	1.86e-131	382
MsaG005599	AT5G06950.1	63.057	314	105	7	116	422	21	330	1.86e-131	382
MsaG005599	AT5G06950.5	63.057	314	105	7	116	422	21	330	1.86e-131	382
MsaG005599	AT5G06950.3	63.057	314	105	7	116	422	21	330	1.86e-131	382
MsaG005599	AT3G12250.6	57.101	345	129	5	82	422	1	330	5.46e-130	378
MsaG005599	AT3G12250.2	57.101	345	129	5	82	422	1	330	5.46e-130	378
MsaG005599	AT3G12250.7	57.101	345	129	5	82	422	1	330	5.46e-130	378
MsaG005599	AT3G12250.1	57.101	345	129	5	82	422	1	330	5.46e-130	378

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Find 88 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACCTTGAGCCGTTAT+CGG	0.365933	1:-83317797	MsaT005599.1:CDS
AAATGAAATCATTTATGACA+AGG	0.642100	1:+83317388	None:intergenic
AACACCATTGCACCAAGACA+CGG	0.624897	1:+83319767	None:intergenic
AAGGAAGAATGGGAAGAGAA+TGG	0.520953	1:+83320513	None:intergenic
AAGGATCAATGCAAGACTAA+GGG	0.612820	1:-83319714	MsaT005599.1:CDS
AATTGGAGAACAGTCGACTT+AGG	0.507628	1:-83318872	MsaT005599.1:CDS
ACACTATCCTCCACATCCAC+TGG	0.532462	1:-83317673	MsaT005599.1:CDS
ACCATGATCCGCTGGAACTC+CGG	0.404015	1:+83318690	None:intergenic
ACCATTGCACCAAGACACGG+TGG	0.708421	1:+83319770	None:intergenic
ACCGGAGTTCCAGCGGATCA+TGG	0.518939	1:-83318691	MsaT005599.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	83317338	83320568	83317338	ID=MsaG005599
Chr1	mRNA	83317338	83320568	83317338	ID=MsaT005599.1;Parent=MsaG005599
Chr1	exon	83317338	83317484	83317338	ID=MsaT005599.1.exon11;Parent=MsaT005599.1
Chr1	CDS	83317338	83317484	83317338	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83317591	83317827	83317591	ID=MsaT005599.1.exon10;Parent=MsaT005599.1
Chr1	CDS	83317591	83317827	83317591	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83318106	83318377	83318106	ID=MsaT005599.1.exon9;Parent=MsaT005599.1
Chr1	CDS	83318106	83318377	83318106	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83318671	83318728	83318671	ID=MsaT005599.1.exon8;Parent=MsaT005599.1
Chr1	CDS	83318671	83318728	83318671	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83318830	83318907	83318830	ID=MsaT005599.1.exon7;Parent=MsaT005599.1
Chr1	CDS	83318830	83318907	83318830	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83319521	83319580	83319521	ID=MsaT005599.1.exon6;Parent=MsaT005599.1
Chr1	CDS	83319521	83319580	83319521	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83319695	83319799	83319695	ID=MsaT005599.1.exon5;Parent=MsaT005599.1
Chr1	CDS	83319695	83319799	83319695	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83319893	83319991	83319893	ID=MsaT005599.1.exon4;Parent=MsaT005599.1
Chr1	CDS	83319893	83319991	83319893	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83320070	83320143	83320070	ID=MsaT005599.1.exon3;Parent=MsaT005599.1
Chr1	CDS	83320070	83320143	83320070	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83320287	83320363	83320287	ID=MsaT005599.1.exon2;Parent=MsaT005599.1
Chr1	CDS	83320287	83320363	83320287	ID=cds.MsaT005599.1;Parent=MsaT005599.1
Chr1	exon	83320504	83320568	83320504	ID=MsaT005599.1.exon1;Parent=MsaT005599.1
Chr1	CDS	83320504	83320568	83320504	ID=cds.MsaT005599.1;Parent=MsaT005599.1

Gene Sequence

>MsaT005599.1

ATGCAAAACTTCAACACAACTGAATCAACCTCACCATTCTCTTCCCATTCTTCCTTCTTGCTTAGGGGAGATGATGAACTCAACATAAATCCAACGCGTTTCTTCCATCCTCAACATCACCATGCTGTTGATTTAAGCTCAAGCTATGTGTTTGGTGCAAAGTCTAACAATGTCACTGTTGTTGCAAGTAACTTGCAGTATGGAACATTCAATACTAACATTGGTTCAGCTTCTTCTTCAGGCATGGCAGATAACAGTCAAAAGACAGAAGATACTTCAACAGAAGATTTTGACAATGATGATAAAAACAACCAATGTTTATCCACCGTGTCTTGGTGCAATGGTGTTGGAAATGAGGCTCTTGTAGTTGTTGAATCCAAGGATCAATGCAAGACTAAGGGTCAATCTGATGAGCACAAGGCTCTTCGTCGGCTGATGCAGAATCGTGAGGCTGCAAGGAAAAGTAGGTTAAGGAAAAAGGCATATGTGCAACAATTGGAGAACAGTCGACTTAGGCTTGCTCAAATAGAACAAGAGCTTCAACAAGTACGTCAACAGGGTGCATTTGTTGCAACCGGAGTTCCAGCGGATCATGGTCATTCAATTGTTGGAAATAGTGCATTAGCATTTGATATGGATTATGCTCGTTGGGTAGATGAGCATCAACGACTAATCAATGACATAAGATCAGCTATAAATTCTCAAATGGGCGATAATGAACTGCATCTTCTTGTTGAAGGTGTCATGTCACATTATGATGAATTATACAAGTTGAAGAGCATAGGTGCAAAGGCTGATGTATTTCACATACTTTCTGGGTTGTGGAAGACACCTGCAGAAAGATGTTTCATGTGGCTCGGTGGATTCCGTTCTTCCGAACTTCTTAAGATTGTTAGAAACCACCTTGAGCCGTTATCGGATCAGCAGTTGATGGGGATCTACAATCTGCAGCATTCTTCTCAGCAAGCTGAGGATGCTTTATCTCAAGGAATGGAAGCATTGCAACAATCTCTTTCAGAAACACTATCCTCCACATCCACTGGATCTGGAAATGTTGCTGAGTACATGGGCCAAATGGCTCTTGCAATGGCCAAGCTTGCCACACTAGAGACTTTCATTCATCAGGCTGATCTCTTGAGGCAACAAACACTGCAACAGTTGCGTCGAATTTTGACCGCGCACCAAGCTGCTCGCGCTCTCCTTGTCATAAATGATTTCATTTCGCGTCGAGCTCTTAATTCATTATGGTCAGCATGTCCTAAAGAATACTAA

Protein sequence

>MsaT005599.1

MQNFNTTESTSPFSSHSSFLLRGDDELNINPTRFFHPQHHHAVDLSSSYVFGAKSNNVTVVASNLQYGTFNTNIGSASSSGMADNSQKTEDTSTEDFDNDDKNNQCLSTVSWCNGVGNEALVVVESKDQCKTKGQSDEHKALRRLMQNREAARKSRLRKKAYVQQLENSRLRLAQIEQELQQVRQQGAFVATGVPADHGHSIVGNSALAFDMDYARWVDEHQRLINDIRSAINSQMGDNELHLLVEGVMSHYDELYKLKSIGAKADVFHILSGLWKTPAERCFMWLGGFRSSELLKIVRNHLEPLSDQQLMGIYNLQHSSQQAEDALSQGMEALQQSLSETLSSTSTGSGNVAEYMGQMALAMAKLATLETFIHQADLLRQQTLQQLRRILTAHQAARALLVINDFISRRALNSLWSACPKEY*