AlfalfaGEDB | MsaG005624

M. sativa ssp. caerulea / MsaG005624

KEGG: -
GO: -
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005624	XP_013470249.1	97.890	237	4	1	1	237	1	236	3.68e-169	478

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005624	sp\|Q9FNN6\|SRM1_ARATH	54.545	187	69	3	25	200	12	193	8.80e-59	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005624	tr\|G7ZYT0\|G7ZYT0_MEDTR	97.890	237	4	1	1	237	1	236	1.76e-169	478

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005624	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005624	MtrunA17_Chr1g0210471	97.890	237	4	1	1	237	1	236	3.39e-173	478
MsaG005624	MtrunA17_Chr1g0162081	54.688	192	69	2	23	200	10	197	9.55e-63	199
MsaG005624	MtrunA17_Chr3g0104071	43.154	241	112	6	23	247	41	272	2.37e-57	186
MsaG005624	MtrunA17_Chr5g0429521	50.282	177	79	2	23	193	27	200	5.47e-55	180
MsaG005624	MtrunA17_Chr5g0436501	49.189	185	80	4	23	200	25	202	3.71e-54	176
MsaG005624	MtrunA17_Chr7g0241761	49.206	189	79	4	23	200	33	215	4.85e-54	177
MsaG005624	MtrunA17_Chr4g0062741	46.500	200	77	3	25	194	8	207	1.46e-53	176
MsaG005624	MtrunA17_Chr8g0365011	42.708	192	80	3	23	200	6	181	2.53e-41	144
MsaG005624	MtrunA17_Chr4g0055931	52.800	125	43	2	94	202	49	173	3.26e-35	129
MsaG005624	MtrunA17_Chr2g0331031	61.538	91	34	1	119	208	103	193	1.48e-32	122

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005624	AT5G04760.1	64.322	199	64	3	23	221	4	195	1.09e-77	235
MsaG005624	AT5G08520.1	54.545	187	69	3	25	200	12	193	8.95e-60	192
MsaG005624	AT3G11280.2	51.497	167	75	2	25	191	33	193	1.12e-54	178
MsaG005624	AT3G11280.1	51.497	167	75	2	25	191	33	193	1.12e-54	178
MsaG005624	AT2G38090.1	44.976	209	98	4	6	198	7	214	1.69e-53	176
MsaG005624	AT5G05790.2	46.591	176	88	2	21	193	27	199	2.26e-52	172
MsaG005624	AT5G05790.1	46.591	176	88	2	21	193	27	199	2.26e-52	172
MsaG005624	AT1G49010.1	44.737	228	88	7	25	226	8	223	2.27e-52	174
MsaG005624	AT5G58900.1	47.778	180	79	2	25	193	34	209	3.20e-52	172
MsaG005624	AT5G01200.1	40.376	213	103	5	1	193	6	214	8.52e-45	152

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Find 97 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACAAAATAGATGTAT+CGG	0.481957	1:+83637307	None:intergenic
AACGACAAAATAGATGTATC+GGG	0.540302	1:+83637308	None:intergenic
AACTGGGTTCCTCCTCCTGG+TGG	0.574702	1:+83638747	MsaT005624.1:CDS
AAGATCGCGGAACAAGTTCC+AGG	0.479111	1:+83637468	MsaT005624.1:CDS
AAGCGCACAACTGCGCACCA+TGG	0.674306	1:+83642270	MsaT005624.1:CDS
AAGTATTCATGACATTACAT+CGG	0.675179	1:+83638689	MsaT005624.1:CDS
AATTGATTCGGGTCGGGTTG+AGG	0.410540	1:+83637548	MsaT005624.1:CDS
ACAACTGCGCACCATGGTAA+GGG	0.550073	1:+83642276	MsaT005624.1:CDS
ACTGGAAATTGATTCGGGTC+GGG	0.496104	1:+83637542	MsaT005624.1:CDS
AGAATTCGGTGAAGAAAGAG+AGG	0.605688	1:+83638658	MsaT005624.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	83637321	83642362	83637321	ID=MsaG005624
Chr1	mRNA	83637321	83642362	83637321	ID=MsaT005624.1;Parent=MsaG005624
Chr1	exon	83637321	83637718	83637321	ID=MsaT005624.1.exon1;Parent=MsaT005624.1
Chr1	CDS	83637321	83637718	83637321	ID=cds.MsaT005624.1;Parent=MsaT005624.1
Chr1	exon	83638536	83638847	83638536	ID=MsaT005624.1.exon2;Parent=MsaT005624.1
Chr1	CDS	83638536	83638847	83638536	ID=cds.MsaT005624.1;Parent=MsaT005624.1
Chr1	exon	83639869	83639892	83639869	ID=MsaT005624.1.exon3;Parent=MsaT005624.1
Chr1	CDS	83639869	83639892	83639869	ID=cds.MsaT005624.1;Parent=MsaT005624.1
Chr1	exon	83642248	83642362	83642248	ID=MsaT005624.1.exon4;Parent=MsaT005624.1
Chr1	CDS	83642248	83642362	83642248	ID=cds.MsaT005624.1;Parent=MsaT005624.1

Gene Sequence

>MsaT005624.1

ATGTATCGGGAGTCAGTTGCTATGGCTGCCACCACCGCCGCCACGACGCGGTGGCCGACTCAACCAACTCAGTGGACTCGAGACCATGACAAGCTGTTCGAGCGAGCTCTGTTGATGGTGCCGGAGGATTTACCGGACCGGTGGGAGAAGATCGCGGAACAAGTTCCAGGTAAGTCTGCGACGGAAATTAGGGATCACTATGAAGCTTTGGTTCATGATATACTGGAAATTGATTCGGGTCGGGTTGAGGTGCCGAGTTATTCTGATGAATCGGCTGTGAGTGGTGGTGGATTGGCTGAATGGGATTCTTCGAATCAAATTTCGTTTGGTTCGAAGCCGAGACATGGCGGTGATAACGAGAGGAAGAAAGGAACTCCATGGACTGAAGAAGAACACAGGCTGTTTCTTATTGGGCTGACCAAATTTGGGAAAGGAGATTGGAGAAGCATTTCAAGGAATGTTGTTGTGACAAGAACACCAACTCAGGTGGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAATTCGGTGAAGAAAGAGAGGAAGAGATCAAGTATTCATGACATTACATCGGTGGACAGTAACTCAGCTCCTGTGCCTATTGATCAGAACTGGGTTCCTCCTCCTGGTGGTGGTTCAATGCAACAACAGTCTCAAGAAATGCATCATTATCCGTCAAACGATTTGCAGGATCAAATGAGTGCATATGGGGACGATCATAATGTGATTATAATCTACCCTTTAGATTATTATCTTAAGCGCACAACTGCGCACCATGGTAAGGGGCAATCATCCCCCTGCTGTGCTTGGAAGGCGCATGCCACAAACAATTTGCAATGGACACCTTGA

Protein sequence

>MsaT005624.1

MYRESVAMAATTAATTRWPTQPTQWTRDHDKLFERALLMVPEDLPDRWEKIAEQVPGKSATEIRDHYEALVHDILEIDSGRVEVPSYSDESAVSGGGLAEWDSSNQISFGSKPRHGGDNERKKGTPWTEEEHRLFLIGLTKFGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITSVDSNSAPVPIDQNWVPPPGGGSMQQQSQEMHHYPSNDLQDQMSAYGDDHNVIIIYPLDYYLKRTTAHHGKGQSSPCCAWKAHATNNLQWTP*