Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005624 | XP_013470249.1 | 97.890 | 237 | 4 | 1 | 1 | 237 | 1 | 236 | 3.68e-169 | 478 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005624 | sp|Q9FNN6|SRM1_ARATH | 54.545 | 187 | 69 | 3 | 25 | 200 | 12 | 193 | 8.80e-59 | 192 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005624 | tr|G7ZYT0|G7ZYT0_MEDTR | 97.890 | 237 | 4 | 1 | 1 | 237 | 1 | 236 | 1.76e-169 | 478 |
Gene ID | Type | Classification |
---|---|---|
MsaG005624 | TF | MYB |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005624 | MtrunA17_Chr1g0210471 | 97.890 | 237 | 4 | 1 | 1 | 237 | 1 | 236 | 3.39e-173 | 478 |
MsaG005624 | MtrunA17_Chr1g0162081 | 54.688 | 192 | 69 | 2 | 23 | 200 | 10 | 197 | 9.55e-63 | 199 |
MsaG005624 | MtrunA17_Chr3g0104071 | 43.154 | 241 | 112 | 6 | 23 | 247 | 41 | 272 | 2.37e-57 | 186 |
MsaG005624 | MtrunA17_Chr5g0429521 | 50.282 | 177 | 79 | 2 | 23 | 193 | 27 | 200 | 5.47e-55 | 180 |
MsaG005624 | MtrunA17_Chr5g0436501 | 49.189 | 185 | 80 | 4 | 23 | 200 | 25 | 202 | 3.71e-54 | 176 |
MsaG005624 | MtrunA17_Chr7g0241761 | 49.206 | 189 | 79 | 4 | 23 | 200 | 33 | 215 | 4.85e-54 | 177 |
MsaG005624 | MtrunA17_Chr4g0062741 | 46.500 | 200 | 77 | 3 | 25 | 194 | 8 | 207 | 1.46e-53 | 176 |
MsaG005624 | MtrunA17_Chr8g0365011 | 42.708 | 192 | 80 | 3 | 23 | 200 | 6 | 181 | 2.53e-41 | 144 |
MsaG005624 | MtrunA17_Chr4g0055931 | 52.800 | 125 | 43 | 2 | 94 | 202 | 49 | 173 | 3.26e-35 | 129 |
MsaG005624 | MtrunA17_Chr2g0331031 | 61.538 | 91 | 34 | 1 | 119 | 208 | 103 | 193 | 1.48e-32 | 122 |
MsaG005624 | MtrunA17_Chr5g0432921 | 40.000 | 190 | 98 | 7 | 24 | 209 | 20 | 197 | 2.58e-32 | 119 |
MsaG005624 | MtrunA17_Chr5g0432941 | 40.415 | 193 | 92 | 8 | 24 | 209 | 21 | 197 | 4.38e-31 | 115 |
MsaG005624 | MtrunA17_Chr8g0389241 | 62.069 | 87 | 32 | 1 | 103 | 189 | 83 | 168 | 5.85e-30 | 114 |
MsaG005624 | MtrunA17_Chr6g0488471 | 70.423 | 71 | 21 | 0 | 120 | 190 | 92 | 162 | 6.34e-30 | 114 |
MsaG005624 | MtrunA17_Chr5g0415191 | 68.421 | 76 | 24 | 0 | 116 | 191 | 93 | 168 | 1.09e-26 | 106 |
MsaG005624 | MtrunA17_Chr4g0059701 | 65.169 | 89 | 29 | 2 | 118 | 206 | 77 | 163 | 7.65e-26 | 103 |
MsaG005624 | MtrunA17_Chr3g0092621 | 65.152 | 66 | 23 | 0 | 126 | 191 | 85 | 150 | 2.48e-24 | 96.7 |
MsaG005624 | MtrunA17_Chr5g0409841 | 41.304 | 138 | 68 | 5 | 86 | 219 | 56 | 184 | 9.49e-24 | 96.7 |
MsaG005624 | MtrunA17_Chr8g0364741 | 46.429 | 112 | 56 | 2 | 23 | 134 | 8 | 115 | 1.59e-23 | 92.8 |
MsaG005624 | MtrunA17_Chr5g0440731 | 40.000 | 155 | 70 | 6 | 73 | 210 | 56 | 204 | 2.86e-23 | 96.7 |
MsaG005624 | MtrunA17_Chr5g0440741 | 50.505 | 99 | 33 | 3 | 127 | 210 | 102 | 199 | 7.54e-23 | 95.1 |
MsaG005624 | MtrunA17_Chr3g0135671 | 64.789 | 71 | 22 | 2 | 122 | 189 | 88 | 158 | 7.58e-23 | 94.0 |
MsaG005624 | MtrunA17_Chr8g0364731 | 69.565 | 69 | 17 | 2 | 134 | 198 | 10 | 78 | 1.48e-20 | 86.7 |
MsaG005624 | MtrunA17_Chr6g0452791 | 53.846 | 78 | 25 | 2 | 126 | 203 | 81 | 147 | 1.45e-19 | 83.6 |
MsaG005624 | MtrunA17_Chr5g0409831 | 48.387 | 93 | 44 | 2 | 115 | 203 | 67 | 159 | 8.77e-18 | 80.1 |
MsaG005624 | MtrunA17_Chr1g0155181 | 42.254 | 71 | 41 | 0 | 25 | 95 | 7 | 77 | 8.17e-16 | 71.2 |
MsaG005624 | MtrunA17_Chr8g0357851 | 85.417 | 48 | 7 | 0 | 1 | 48 | 1 | 48 | 1.00e-15 | 69.7 |
MsaG005624 | MtrunA17_Chr3g0144631 | 47.619 | 63 | 33 | 0 | 25 | 87 | 16 | 78 | 2.24e-15 | 69.7 |
MsaG005624 | MtrunA17_Chr3g0141601 | 41.667 | 72 | 42 | 0 | 23 | 94 | 5 | 76 | 5.32e-15 | 68.9 |
MsaG005624 | MtrunA17_Chr5g0404101 | 44.928 | 69 | 38 | 0 | 19 | 87 | 13 | 81 | 1.78e-14 | 67.8 |
MsaG005624 | MtrunA17_Chr1g0192061 | 52.055 | 73 | 31 | 2 | 127 | 196 | 63 | 134 | 1.00e-13 | 68.2 |
MsaG005624 | MtrunA17_Chr6g0449111 | 43.284 | 67 | 38 | 0 | 23 | 89 | 8 | 74 | 1.01e-13 | 65.1 |
MsaG005624 | MtrunA17_Chr3g0113121 | 34.014 | 147 | 73 | 5 | 68 | 193 | 27 | 170 | 5.74e-13 | 66.6 |
MsaG005624 | MtrunA17_Chr7g0255841 | 50.000 | 58 | 29 | 0 | 30 | 87 | 17 | 74 | 2.92e-12 | 61.6 |
MsaG005624 | MtrunA17_Chr3g0081631 | 40.909 | 66 | 38 | 1 | 25 | 89 | 10 | 75 | 6.39e-12 | 60.8 |
MsaG005624 | MtrunA17_Chr8g0373131 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 5.30e-11 | 57.8 |
MsaG005624 | MtrunA17_Chr8g0373111 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 6.45e-11 | 57.4 |
MsaG005624 | MtrunA17_Chr8g0373121 | 40.000 | 65 | 38 | 1 | 23 | 87 | 3 | 66 | 6.45e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005624 | AT5G04760.1 | 64.322 | 199 | 64 | 3 | 23 | 221 | 4 | 195 | 1.09e-77 | 235 |
MsaG005624 | AT5G08520.1 | 54.545 | 187 | 69 | 3 | 25 | 200 | 12 | 193 | 8.95e-60 | 192 |
MsaG005624 | AT3G11280.2 | 51.497 | 167 | 75 | 2 | 25 | 191 | 33 | 193 | 1.12e-54 | 178 |
MsaG005624 | AT3G11280.1 | 51.497 | 167 | 75 | 2 | 25 | 191 | 33 | 193 | 1.12e-54 | 178 |
MsaG005624 | AT2G38090.1 | 44.976 | 209 | 98 | 4 | 6 | 198 | 7 | 214 | 1.69e-53 | 176 |
MsaG005624 | AT5G05790.2 | 46.591 | 176 | 88 | 2 | 21 | 193 | 27 | 199 | 2.26e-52 | 172 |
MsaG005624 | AT5G05790.1 | 46.591 | 176 | 88 | 2 | 21 | 193 | 27 | 199 | 2.26e-52 | 172 |
MsaG005624 | AT1G49010.1 | 44.737 | 228 | 88 | 7 | 25 | 226 | 8 | 223 | 2.27e-52 | 174 |
MsaG005624 | AT5G58900.1 | 47.778 | 180 | 79 | 2 | 25 | 193 | 34 | 209 | 3.20e-52 | 172 |
MsaG005624 | AT5G01200.1 | 40.376 | 213 | 103 | 5 | 1 | 193 | 6 | 214 | 8.52e-45 | 152 |
MsaG005624 | AT5G23650.1 | 39.407 | 236 | 117 | 4 | 23 | 242 | 11 | 236 | 1.22e-44 | 154 |
MsaG005624 | AT3G10580.2 | 44.550 | 211 | 93 | 6 | 25 | 234 | 8 | 195 | 7.75e-43 | 147 |
MsaG005624 | AT3G10580.1 | 48.315 | 178 | 75 | 5 | 25 | 201 | 8 | 169 | 1.34e-42 | 147 |
MsaG005624 | AT4G09450.1 | 49.102 | 167 | 69 | 3 | 24 | 190 | 6 | 156 | 2.11e-41 | 142 |
MsaG005624 | AT5G47390.1 | 66.265 | 83 | 26 | 1 | 120 | 202 | 91 | 171 | 1.41e-31 | 120 |
MsaG005624 | AT5G61620.1 | 51.724 | 116 | 54 | 1 | 80 | 193 | 61 | 176 | 1.10e-28 | 112 |
MsaG005624 | AT5G56840.1 | 65.432 | 81 | 24 | 2 | 120 | 196 | 86 | 166 | 3.29e-28 | 108 |
MsaG005624 | AT1G70000.1 | 73.333 | 75 | 20 | 0 | 116 | 190 | 89 | 163 | 4.16e-28 | 108 |
MsaG005624 | AT1G70000.2 | 73.333 | 75 | 20 | 0 | 116 | 190 | 89 | 163 | 4.16e-28 | 108 |
MsaG005624 | AT3G16350.1 | 50.000 | 122 | 52 | 3 | 110 | 229 | 125 | 239 | 3.22e-25 | 103 |
MsaG005624 | AT3G10590.1 | 38.021 | 192 | 106 | 7 | 24 | 208 | 6 | 191 | 1.40e-24 | 98.6 |
MsaG005624 | AT1G19000.2 | 50.847 | 118 | 51 | 2 | 74 | 191 | 58 | 168 | 2.45e-23 | 97.1 |
MsaG005624 | AT1G19000.1 | 50.847 | 118 | 51 | 2 | 74 | 191 | 58 | 168 | 2.45e-23 | 97.1 |
MsaG005624 | AT3G10585.1 | 38.323 | 167 | 67 | 4 | 25 | 190 | 7 | 138 | 4.52e-23 | 93.2 |
MsaG005624 | AT1G74840.2 | 65.333 | 75 | 26 | 0 | 117 | 191 | 88 | 162 | 1.54e-22 | 93.6 |
MsaG005624 | AT1G74840.1 | 65.333 | 75 | 26 | 0 | 117 | 191 | 88 | 162 | 2.40e-22 | 94.0 |
MsaG005624 | AT3G10595.1 | 31.792 | 173 | 85 | 6 | 25 | 195 | 6 | 147 | 4.22e-18 | 80.5 |
MsaG005624 | AT1G75250.2 | 42.667 | 75 | 41 | 1 | 13 | 87 | 2 | 74 | 2.73e-16 | 73.2 |
MsaG005624 | AT1G75250.1 | 42.667 | 75 | 41 | 1 | 13 | 87 | 2 | 74 | 4.56e-16 | 73.6 |
MsaG005624 | AT4G39250.1 | 39.474 | 76 | 46 | 0 | 25 | 100 | 14 | 89 | 4.91e-15 | 69.7 |
MsaG005624 | AT2G18328.1 | 49.180 | 61 | 31 | 0 | 29 | 89 | 15 | 75 | 4.93e-13 | 63.5 |
MsaG005624 | AT2G21650.1 | 41.096 | 73 | 43 | 0 | 25 | 97 | 14 | 86 | 6.62e-12 | 61.2 |
MsaG005624 | AT1G19510.1 | 44.068 | 59 | 33 | 0 | 29 | 87 | 16 | 74 | 8.06e-12 | 61.2 |
MsaG005624 | AT4G36570.1 | 59.091 | 44 | 18 | 0 | 25 | 68 | 12 | 55 | 5.83e-11 | 57.4 |
Find 97 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTATTGGGCTGACCAAATT+TGG | 0.115459 | 1:+83638543 | MsaT005624.1:CDS |
CCAATCTCCTTTCCCAAATT+TGG | 0.134856 | 1:-83638556 | None:intergenic |
CTGTGCAGGCTGTTTCTTAT+TGG | 0.143950 | 1:+83638528 | MsaT005624.1:intron |
GTAAGTCTGCGACGGAAATT+AGG | 0.198649 | 1:+83637490 | MsaT005624.1:CDS |
TCTCTTTCTTCACCGAATTC+TGG | 0.216560 | 1:-83638656 | None:intergenic |
CTGTGCCTATTGATCAGAAC+TGG | 0.289180 | 1:+83638730 | MsaT005624.1:CDS |
TGTGCAGGCTGTTTCTTATT+GGG | 0.291908 | 1:+83638529 | MsaT005624.1:intron |
CCAAATTTGGGAAAGGAGAT+TGG | 0.329445 | 1:+83638556 | MsaT005624.1:CDS |
CCGCGTCGTGGCGGCGGTGG+TGG | 0.329644 | 1:-83637349 | None:intergenic |
TGATATACTGGAAATTGATT+CGG | 0.359965 | 1:+83637536 | MsaT005624.1:CDS |
TGGTGGTGGATTGGCTGAAT+GGG | 0.366393 | 1:+83637602 | MsaT005624.1:CDS |
AGCTTTGGTTCATGATATAC+TGG | 0.372414 | 1:+83637524 | MsaT005624.1:CDS |
CAGGATCAAATGAGTGCATA+TGG | 0.389179 | 1:+83638825 | MsaT005624.1:CDS |
GATGGTGCCGGAGGATTTAC+CGG | 0.392546 | 1:+83637434 | MsaT005624.1:CDS |
TAGGGATCACTATGAAGCTT+TGG | 0.393734 | 1:+83637509 | MsaT005624.1:CDS |
GTGGTGGTGGATTGGCTGAA+TGG | 0.393857 | 1:+83637601 | MsaT005624.1:CDS |
CGGCCACCGCGTCGTGGCGG+CGG | 0.396563 | 1:-83637355 | None:intergenic |
TTATTGGGCTGACCAAATTT+GGG | 0.397453 | 1:+83638544 | MsaT005624.1:CDS |
CACAACTGCGCACCATGGTA+AGG | 0.400797 | 1:+83642275 | MsaT005624.1:CDS |
TCTTCGAATCAAATTTCGTT+TGG | 0.406289 | 1:+83637627 | MsaT005624.1:CDS |
AATTGATTCGGGTCGGGTTG+AGG | 0.410540 | 1:+83637548 | MsaT005624.1:CDS |
GTACTTTCTTCGCCAGAATT+CGG | 0.412820 | 1:+83638644 | MsaT005624.1:CDS |
CAGAACTGGGTTCCTCCTCC+TGG | 0.418709 | 1:+83638744 | MsaT005624.1:CDS |
CCACCGCGTCGTGGCGGCGG+TGG | 0.422019 | 1:-83637352 | None:intergenic |
GATATACTGGAAATTGATTC+GGG | 0.424201 | 1:+83637537 | MsaT005624.1:CDS |
GGAACCCAGTTCTGATCAAT+AGG | 0.426296 | 1:-83638735 | None:intergenic |
GTTCGAGCGAGCTCTGTTGA+TGG | 0.427794 | 1:+83637416 | MsaT005624.1:CDS |
TAAGTCTGCGACGGAAATTA+GGG | 0.429071 | 1:+83637491 | MsaT005624.1:CDS |
ATGCGCCTTCCAAGCACAGC+AGG | 0.431050 | 1:-83642310 | None:intergenic |
CTGTGTTCTTCTTCAGTCCA+TGG | 0.441575 | 1:-83637696 | None:intergenic |
TTATCCGTCAAACGATTTGC+AGG | 0.442120 | 1:+83638806 | MsaT005624.1:CDS |
CGCTTAAGATAATAATCTAA+AGG | 0.444470 | 1:-83642252 | None:intergenic |
TGATCCTGCAAATCGTTTGA+CGG | 0.446093 | 1:-83638810 | None:intergenic |
ATTTCCGTCGCAGACTTACC+TGG | 0.452535 | 1:-83637486 | None:intergenic |
TGGGTTCCTCCTCCTGGTGG+TGG | 0.475189 | 1:+83638750 | MsaT005624.1:CDS |
AAGATCGCGGAACAAGTTCC+AGG | 0.479111 | 1:+83637468 | MsaT005624.1:CDS |
AAACGACAAAATAGATGTAT+CGG | 0.481957 | 1:+83637307 | None:intergenic |
GCCGAGTTATTCTGATGAAT+CGG | 0.482612 | 1:+83637572 | MsaT005624.1:CDS |
GAATCGGCTGTGAGTGGTGG+TGG | 0.484996 | 1:+83637588 | MsaT005624.1:CDS |
ACTGGAAATTGATTCGGGTC+GGG | 0.496104 | 1:+83637542 | MsaT005624.1:CDS |
GAGATTGGAGAAGCATTTCA+AGG | 0.497665 | 1:+83638571 | MsaT005624.1:CDS |
GCGATCTTCTCCCACCGGTC+CGG | 0.507834 | 1:-83637453 | None:intergenic |
GCTTAAGATAATAATCTAAA+GGG | 0.511015 | 1:-83642251 | None:intergenic |
GGCTGTGAGTGGTGGTGGAT+TGG | 0.511900 | 1:+83637593 | MsaT005624.1:CDS |
TACTGGAAATTGATTCGGGT+CGG | 0.512665 | 1:+83637541 | MsaT005624.1:CDS |
CACCGGTCCGGTAAATCCTC+CGG | 0.521987 | 1:-83637441 | None:intergenic |
TGTCCATTGCAAATTGTTTG+TGG | 0.522812 | 1:-83642334 | None:intergenic |
CCACCACCGCCGCCACGACG+CGG | 0.524799 | 1:+83637349 | MsaT005624.1:CDS |
GCGAGCTCTGTTGATGGTGC+CGG | 0.528587 | 1:+83637422 | MsaT005624.1:CDS |
GTATCGGGAGTCAGTTGCTA+TGG | 0.535551 | 1:+83637323 | MsaT005624.1:CDS |
TGTTGCATTGAACCACCACC+AGG | 0.537371 | 1:-83638762 | None:intergenic |
AACGACAAAATAGATGTATC+GGG | 0.540302 | 1:+83637308 | None:intergenic |
GTCCACTGAGTTGGTTGAGT+CGG | 0.541227 | 1:-83637375 | None:intergenic |
TCGTTATCACCGCCATGTCT+CGG | 0.543106 | 1:-83637657 | None:intergenic |
GGTGATAACGAGAGGAAGAA+AGG | 0.548667 | 1:+83637669 | MsaT005624.1:CDS |
TGCGCCTTCCAAGCACAGCA+GGG | 0.549426 | 1:-83642309 | None:intergenic |
ACAACTGCGCACCATGGTAA+GGG | 0.550073 | 1:+83642276 | MsaT005624.1:CDS |
CGGAGGATTTACCGGACCGG+TGG | 0.556040 | 1:+83637442 | MsaT005624.1:CDS |
CGCCTTCCAAGCACAGCAGG+GGG | 0.563933 | 1:-83642307 | None:intergenic |
GCGCCTTCCAAGCACAGCAG+GGG | 0.568690 | 1:-83642308 | None:intergenic |
TTTGGTTCGAAGCCGAGACA+TGG | 0.569715 | 1:+83637645 | MsaT005624.1:CDS |
GTTCCGCGATCTTCTCCCAC+CGG | 0.572597 | 1:-83637458 | None:intergenic |
AACTGGGTTCCTCCTCCTGG+TGG | 0.574702 | 1:+83638747 | MsaT005624.1:CDS |
GGGCTGACCAAATTTGGGAA+AGG | 0.576808 | 1:+83638549 | MsaT005624.1:CDS |
CTCGCTCGAACAGCTTGTCA+TGG | 0.578069 | 1:-83637404 | None:intergenic |
GGGATGATTGCCCCTTACCA+TGG | 0.579577 | 1:-83642287 | None:intergenic |
CAGTTCTGATCAATAGGCAC+AGG | 0.581958 | 1:-83638729 | None:intergenic |
GCATGGCTAGCCACCTGAGT+TGG | 0.585938 | 1:-83638615 | None:intergenic |
CAACTGCGCACCATGGTAAG+GGG | 0.587511 | 1:+83642277 | MsaT005624.1:CDS |
TGCCGGAGGATTTACCGGAC+CGG | 0.588914 | 1:+83637439 | MsaT005624.1:CDS |
TGGTCTCGAGTCCACTGAGT+TGG | 0.594247 | 1:-83637384 | None:intergenic |
TGTGACAAGAACACCAACTC+AGG | 0.595788 | 1:+83638602 | MsaT005624.1:CDS |
AGCTCTGTTGATGGTGCCGG+AGG | 0.598113 | 1:+83637425 | MsaT005624.1:CDS |
AGTCGGCCACCGCGTCGTGG+CGG | 0.599166 | 1:-83637358 | None:intergenic |
AGGATCAAATGAGTGCATAT+GGG | 0.599865 | 1:+83638826 | MsaT005624.1:CDS |
AGAGGAAGAAAGGAACTCCA+TGG | 0.603418 | 1:+83637679 | MsaT005624.1:CDS |
AGAATTCGGTGAAGAAAGAG+AGG | 0.605688 | 1:+83638658 | MsaT005624.1:CDS |
TGTGCCTATTGATCAGAACT+GGG | 0.607519 | 1:+83638731 | MsaT005624.1:CDS |
TTGAGTCGGCCACCGCGTCG+TGG | 0.614569 | 1:-83637361 | None:intergenic |
CCACCGCCGCCACGACGCGG+TGG | 0.616473 | 1:+83637352 | MsaT005624.1:CDS |
ATTGAACCACCACCAGGAGG+AGG | 0.621879 | 1:-83638756 | None:intergenic |
ATGCCACAAACAATTTGCAA+TGG | 0.640316 | 1:+83642331 | MsaT005624.1:CDS |
TCTGATGAATCGGCTGTGAG+TGG | 0.640798 | 1:+83637582 | MsaT005624.1:CDS |
GGCCGACTCAACCAACTCAG+TGG | 0.643487 | 1:+83637373 | MsaT005624.1:CDS |
TATTCATGACATTACATCGG+TGG | 0.643904 | 1:+83638692 | MsaT005624.1:CDS |
GGAGGATTTACCGGACCGGT+GGG | 0.645323 | 1:+83637443 | MsaT005624.1:CDS |
GACATGGCGGTGATAACGAG+AGG | 0.648245 | 1:+83637661 | MsaT005624.1:CDS |
GATGAATCGGCTGTGAGTGG+TGG | 0.651355 | 1:+83637585 | MsaT005624.1:CDS |
AGTTCCAGGTAAGTCTGCGA+CGG | 0.655266 | 1:+83637482 | MsaT005624.1:CDS |
GGACCGGTGGGAGAAGATCG+CGG | 0.663194 | 1:+83637455 | MsaT005624.1:CDS |
GACAAGAACACCAACTCAGG+TGG | 0.663453 | 1:+83638605 | MsaT005624.1:CDS |
GCCGATTCATCAGAATAACT+CGG | 0.668580 | 1:-83637573 | None:intergenic |
AAGCGCACAACTGCGCACCA+TGG | 0.674306 | 1:+83642270 | MsaT005624.1:CDS |
AAGTATTCATGACATTACAT+CGG | 0.675179 | 1:+83638689 | MsaT005624.1:CDS |
TGCATTGAACCACCACCAGG+AGG | 0.701355 | 1:-83638759 | None:intergenic |
CATGGACTGAAGAAGAACAC+AGG | 0.714829 | 1:+83637697 | MsaT005624.1:CDS |
GGTTCGAAGCCGAGACATGG+CGG | 0.716484 | 1:+83637648 | MsaT005624.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 83637321 | 83642362 | 83637321 | ID=MsaG005624 |
Chr1 | mRNA | 83637321 | 83642362 | 83637321 | ID=MsaT005624.1;Parent=MsaG005624 |
Chr1 | exon | 83637321 | 83637718 | 83637321 | ID=MsaT005624.1.exon1;Parent=MsaT005624.1 |
Chr1 | CDS | 83637321 | 83637718 | 83637321 | ID=cds.MsaT005624.1;Parent=MsaT005624.1 |
Chr1 | exon | 83638536 | 83638847 | 83638536 | ID=MsaT005624.1.exon2;Parent=MsaT005624.1 |
Chr1 | CDS | 83638536 | 83638847 | 83638536 | ID=cds.MsaT005624.1;Parent=MsaT005624.1 |
Chr1 | exon | 83639869 | 83639892 | 83639869 | ID=MsaT005624.1.exon3;Parent=MsaT005624.1 |
Chr1 | CDS | 83639869 | 83639892 | 83639869 | ID=cds.MsaT005624.1;Parent=MsaT005624.1 |
Chr1 | exon | 83642248 | 83642362 | 83642248 | ID=MsaT005624.1.exon4;Parent=MsaT005624.1 |
Chr1 | CDS | 83642248 | 83642362 | 83642248 | ID=cds.MsaT005624.1;Parent=MsaT005624.1 |
Gene Sequence |
Protein sequence |