Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005667 | XP_013470305.1 | 91.379 | 348 | 9 | 7 | 1 | 341 | 1 | 334 | 0.0 | 609 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005667 | sp|Q700D9|MYBF_ARATH | 72.152 | 79 | 22 | 0 | 5 | 83 | 4 | 82 | 4.53e-33 | 126 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005667 | tr|A0A072VSF0|A0A072VSF0_MEDTR | 91.379 | 348 | 9 | 7 | 1 | 341 | 1 | 334 | 0.0 | 609 |
Gene ID | Type | Classification |
---|---|---|
MsaG005667 | TF | GARP-G2-like |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005667 | MtrunA17_Chr1g0210911 | 91.379 | 348 | 9 | 7 | 1 | 341 | 1 | 334 | 0.0 | 609 |
MsaG005667 | MtrunA17_Chr1g0162931 | 47.493 | 339 | 117 | 15 | 3 | 338 | 2 | 282 | 1.61e-77 | 239 |
MsaG005667 | MtrunA17_Chr2g0320231 | 60.870 | 92 | 33 | 2 | 8 | 99 | 81 | 169 | 1.39e-31 | 122 |
MsaG005667 | MtrunA17_Chr2g0288601 | 69.118 | 68 | 21 | 0 | 8 | 75 | 55 | 122 | 7.00e-29 | 108 |
MsaG005667 | MtrunA17_Chr7g0243081 | 64.557 | 79 | 28 | 0 | 2 | 80 | 49 | 127 | 2.15e-28 | 112 |
MsaG005667 | MtrunA17_Chr8g0379121 | 69.697 | 66 | 20 | 0 | 15 | 80 | 102 | 167 | 4.06e-28 | 113 |
MsaG005667 | MtrunA17_Chr2g0283951 | 60.227 | 88 | 29 | 3 | 4 | 85 | 68 | 155 | 1.16e-25 | 105 |
MsaG005667 | MtrunA17_Chr3g0095611 | 57.971 | 69 | 29 | 0 | 14 | 82 | 9 | 77 | 6.17e-24 | 97.8 |
MsaG005667 | MtrunA17_Chr5g0410741 | 47.170 | 106 | 49 | 3 | 23 | 127 | 218 | 317 | 1.02e-21 | 95.1 |
MsaG005667 | MtrunA17_Chr6g0479431 | 63.793 | 58 | 21 | 0 | 23 | 80 | 201 | 258 | 2.80e-21 | 93.6 |
MsaG005667 | MtrunA17_Chr8g0366281 | 65.517 | 58 | 20 | 0 | 23 | 80 | 172 | 229 | 3.47e-21 | 93.2 |
MsaG005667 | MtrunA17_Chr1g0154261 | 59.091 | 66 | 25 | 1 | 15 | 80 | 119 | 182 | 9.79e-21 | 90.9 |
MsaG005667 | MtrunA17_Chr3g0109981 | 63.793 | 58 | 21 | 0 | 23 | 80 | 273 | 330 | 3.63e-20 | 91.3 |
MsaG005667 | MtrunA17_Chr1g0190301 | 67.857 | 56 | 18 | 0 | 25 | 80 | 176 | 231 | 7.58e-20 | 89.7 |
MsaG005667 | MtrunA17_Chr7g0261911 | 66.071 | 56 | 19 | 0 | 25 | 80 | 263 | 318 | 1.97e-19 | 89.0 |
MsaG005667 | MtrunA17_Chr7g0274471 | 66.071 | 56 | 19 | 0 | 25 | 80 | 219 | 274 | 4.49e-19 | 87.8 |
MsaG005667 | MtrunA17_Chr5g0409731 | 47.059 | 102 | 44 | 3 | 1 | 97 | 1 | 97 | 3.26e-18 | 83.6 |
MsaG005667 | MtrunA17_Chr5g0417521 | 47.778 | 90 | 37 | 3 | 25 | 109 | 16 | 100 | 4.14e-17 | 81.3 |
MsaG005667 | MtrunA17_Chr6g0461641 | 55.882 | 68 | 30 | 0 | 25 | 92 | 43 | 110 | 4.22e-17 | 81.6 |
MsaG005667 | MtrunA17_Chr1g0197171 | 36.170 | 141 | 72 | 3 | 25 | 162 | 45 | 170 | 1.15e-16 | 79.3 |
MsaG005667 | MtrunA17_Chr2g0321461 | 62.264 | 53 | 20 | 0 | 25 | 77 | 46 | 98 | 6.48e-16 | 78.2 |
MsaG005667 | MtrunA17_Chr8g0356501 | 56.452 | 62 | 22 | 1 | 25 | 86 | 38 | 94 | 2.29e-15 | 76.3 |
MsaG005667 | MtrunA17_Chr7g0258551 | 54.098 | 61 | 28 | 0 | 20 | 80 | 208 | 268 | 2.50e-15 | 76.3 |
MsaG005667 | MtrunA17_Chr2g0290991 | 56.452 | 62 | 22 | 1 | 25 | 86 | 40 | 96 | 4.82e-15 | 74.7 |
MsaG005667 | MtrunA17_Chr2g0310011 | 56.452 | 62 | 22 | 1 | 25 | 86 | 36 | 92 | 5.05e-15 | 75.1 |
MsaG005667 | MtrunA17_Chr4g0042451 | 55.932 | 59 | 26 | 0 | 25 | 83 | 18 | 76 | 7.65e-15 | 74.3 |
MsaG005667 | MtrunA17_Chr7g0254981 | 65.385 | 52 | 18 | 0 | 26 | 77 | 52 | 103 | 8.22e-15 | 73.6 |
MsaG005667 | MtrunA17_Chr2g0291021 | 65.385 | 52 | 18 | 0 | 26 | 77 | 51 | 102 | 8.46e-15 | 74.3 |
MsaG005667 | MtrunA17_Chr1g0175091 | 63.462 | 52 | 19 | 0 | 26 | 77 | 260 | 311 | 9.14e-15 | 74.7 |
MsaG005667 | MtrunA17_Chr1g0175071 | 35.484 | 124 | 66 | 2 | 2 | 123 | 155 | 266 | 2.66e-14 | 72.8 |
MsaG005667 | MtrunA17_Chr1g0175081 | 55.769 | 52 | 23 | 0 | 26 | 77 | 24 | 75 | 1.00e-12 | 63.9 |
MsaG005667 | MtrunA17_Chr4g0045361 | 61.224 | 49 | 19 | 0 | 29 | 77 | 279 | 327 | 1.49e-12 | 68.2 |
MsaG005667 | MtrunA17_Chr4g0009901 | 43.662 | 71 | 39 | 1 | 7 | 77 | 151 | 220 | 4.39e-12 | 65.9 |
MsaG005667 | MtrunA17_Chr4g0062921 | 59.184 | 49 | 20 | 0 | 29 | 77 | 240 | 288 | 5.61e-12 | 66.6 |
MsaG005667 | MtrunA17_Chr5g0402631 | 59.184 | 49 | 20 | 0 | 29 | 77 | 219 | 267 | 2.88e-11 | 63.9 |
MsaG005667 | MtrunA17_Chr4g0031961 | 50.794 | 63 | 30 | 1 | 15 | 77 | 122 | 183 | 3.87e-11 | 63.2 |
MsaG005667 | MtrunA17_Chr5g0422621 | 55.102 | 49 | 22 | 0 | 29 | 77 | 203 | 251 | 9.22e-11 | 62.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005667 | AT1G14600.1 | 72.152 | 79 | 22 | 0 | 5 | 83 | 4 | 82 | 4.61e-34 | 126 |
MsaG005667 | AT2G02060.2 | 69.512 | 82 | 20 | 1 | 1 | 77 | 1 | 82 | 1.98e-33 | 124 |
MsaG005667 | AT2G02060.1 | 69.512 | 82 | 20 | 1 | 1 | 77 | 1 | 82 | 1.98e-33 | 124 |
MsaG005667 | AT4G04605.1 | 70.149 | 67 | 20 | 0 | 16 | 82 | 6 | 72 | 8.52e-29 | 111 |
MsaG005667 | AT2G40260.1 | 66.667 | 75 | 25 | 0 | 13 | 87 | 71 | 145 | 4.11e-28 | 113 |
MsaG005667 | AT2G42660.1 | 55.319 | 94 | 39 | 1 | 16 | 106 | 42 | 135 | 3.48e-27 | 107 |
MsaG005667 | AT2G38300.1 | 54.737 | 95 | 41 | 1 | 1 | 95 | 31 | 123 | 3.53e-26 | 107 |
MsaG005667 | AT4G04555.1 | 54.054 | 74 | 34 | 0 | 13 | 86 | 3 | 76 | 3.88e-22 | 90.1 |
MsaG005667 | AT5G42630.2 | 43.363 | 113 | 58 | 3 | 6 | 113 | 86 | 197 | 2.44e-21 | 91.3 |
MsaG005667 | AT5G42630.1 | 43.363 | 113 | 58 | 3 | 6 | 113 | 86 | 197 | 3.04e-21 | 92.4 |
MsaG005667 | AT4G17695.1 | 62.712 | 59 | 22 | 0 | 23 | 81 | 163 | 221 | 4.25e-21 | 92.8 |
MsaG005667 | AT1G32240.2 | 63.793 | 58 | 21 | 0 | 23 | 80 | 212 | 269 | 1.73e-20 | 91.7 |
MsaG005667 | AT1G32240.1 | 63.793 | 58 | 21 | 0 | 23 | 80 | 212 | 269 | 2.10e-20 | 91.7 |
MsaG005667 | AT5G16560.1 | 63.793 | 58 | 21 | 0 | 23 | 80 | 218 | 275 | 4.67e-20 | 90.9 |
MsaG005667 | AT4G04580.1 | 56.716 | 67 | 29 | 0 | 16 | 82 | 6 | 72 | 3.20e-19 | 84.0 |
MsaG005667 | AT4G28610.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 227 | 281 | 4.76e-18 | 85.1 |
MsaG005667 | AT5G45580.1 | 53.333 | 75 | 35 | 0 | 21 | 95 | 4 | 78 | 1.25e-17 | 82.0 |
MsaG005667 | AT5G45580.2 | 53.333 | 75 | 35 | 0 | 21 | 95 | 20 | 94 | 1.49e-17 | 82.0 |
MsaG005667 | AT3G24120.1 | 42.017 | 119 | 56 | 4 | 25 | 141 | 42 | 149 | 1.81e-17 | 82.0 |
MsaG005667 | AT3G24120.2 | 42.017 | 119 | 56 | 4 | 25 | 141 | 42 | 149 | 1.83e-17 | 82.0 |
MsaG005667 | AT3G04450.3 | 63.636 | 55 | 20 | 0 | 26 | 80 | 240 | 294 | 2.43e-17 | 82.0 |
MsaG005667 | AT3G04450.4 | 63.636 | 55 | 20 | 0 | 26 | 80 | 200 | 254 | 2.69e-17 | 82.8 |
MsaG005667 | AT3G04450.2 | 63.636 | 55 | 20 | 0 | 26 | 80 | 200 | 254 | 2.69e-17 | 82.8 |
MsaG005667 | AT3G04450.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 240 | 294 | 3.19e-17 | 82.8 |
MsaG005667 | AT5G29000.1 | 63.636 | 55 | 20 | 0 | 26 | 80 | 190 | 244 | 3.62e-17 | 82.0 |
MsaG005667 | AT5G29000.3 | 63.636 | 55 | 20 | 0 | 26 | 80 | 190 | 244 | 3.62e-17 | 82.0 |
MsaG005667 | AT5G29000.2 | 63.636 | 55 | 20 | 0 | 26 | 80 | 233 | 287 | 5.35e-17 | 82.0 |
MsaG005667 | AT5G29000.4 | 63.636 | 55 | 20 | 0 | 26 | 80 | 233 | 287 | 5.50e-17 | 80.9 |
MsaG005667 | AT4G13640.1 | 48.276 | 87 | 35 | 2 | 25 | 111 | 38 | 114 | 3.20e-16 | 78.2 |
MsaG005667 | AT4G13640.2 | 48.276 | 87 | 35 | 2 | 25 | 111 | 38 | 114 | 3.31e-16 | 78.2 |
MsaG005667 | AT2G06020.1 | 38.182 | 110 | 59 | 3 | 7 | 107 | 66 | 175 | 3.41e-16 | 78.6 |
MsaG005667 | AT2G20400.2 | 61.818 | 55 | 21 | 0 | 26 | 80 | 233 | 287 | 3.45e-16 | 79.3 |
MsaG005667 | AT2G20400.1 | 61.818 | 55 | 21 | 0 | 26 | 80 | 233 | 287 | 3.63e-16 | 79.3 |
MsaG005667 | AT3G12730.1 | 49.351 | 77 | 33 | 2 | 25 | 100 | 24 | 95 | 3.94e-16 | 77.0 |
MsaG005667 | AT5G18240.2 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 5.92e-16 | 78.6 |
MsaG005667 | AT5G18240.3 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 5.92e-16 | 78.6 |
MsaG005667 | AT5G18240.5 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 6.82e-16 | 78.6 |
MsaG005667 | AT5G18240.1 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 7.63e-16 | 78.6 |
MsaG005667 | AT5G18240.4 | 50.725 | 69 | 34 | 0 | 9 | 77 | 30 | 98 | 7.63e-16 | 78.6 |
MsaG005667 | AT3G13040.3 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.03e-16 | 78.6 |
MsaG005667 | AT3G13040.1 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.03e-16 | 78.6 |
MsaG005667 | AT3G13040.2 | 65.385 | 52 | 18 | 0 | 26 | 77 | 243 | 294 | 8.03e-16 | 78.6 |
MsaG005667 | AT3G04030.1 | 58.491 | 53 | 22 | 0 | 25 | 77 | 46 | 98 | 1.25e-15 | 77.8 |
MsaG005667 | AT3G04030.3 | 58.491 | 53 | 22 | 0 | 25 | 77 | 46 | 98 | 1.61e-15 | 77.4 |
MsaG005667 | AT1G79430.2 | 56.452 | 62 | 22 | 1 | 25 | 86 | 35 | 91 | 3.76e-15 | 75.9 |
MsaG005667 | AT2G01060.1 | 65.385 | 52 | 18 | 0 | 26 | 77 | 17 | 68 | 4.62e-15 | 75.1 |
MsaG005667 | AT1G69580.1 | 46.341 | 82 | 40 | 2 | 25 | 103 | 35 | 115 | 2.23e-14 | 73.6 |
MsaG005667 | AT1G69580.2 | 46.341 | 82 | 40 | 2 | 25 | 103 | 35 | 115 | 2.52e-14 | 73.6 |
MsaG005667 | AT1G25550.1 | 63.265 | 49 | 18 | 0 | 29 | 77 | 214 | 262 | 1.12e-13 | 71.6 |
MsaG005667 | AT5G06800.3 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 1.58e-13 | 70.5 |
MsaG005667 | AT5G06800.1 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 3.65e-13 | 70.1 |
MsaG005667 | AT5G06800.2 | 61.538 | 52 | 20 | 0 | 26 | 77 | 194 | 245 | 3.77e-13 | 70.1 |
MsaG005667 | AT3G04030.2 | 54.717 | 53 | 23 | 1 | 25 | 77 | 46 | 97 | 7.35e-13 | 69.3 |
MsaG005667 | AT1G25550.2 | 47.826 | 69 | 36 | 0 | 9 | 77 | 194 | 262 | 1.37e-12 | 67.8 |
MsaG005667 | AT2G03500.1 | 59.184 | 49 | 20 | 0 | 29 | 77 | 238 | 286 | 5.97e-12 | 66.6 |
MsaG005667 | AT5G44190.1 | 48.571 | 70 | 34 | 2 | 23 | 91 | 146 | 214 | 7.46e-12 | 66.2 |
MsaG005667 | AT5G44190.2 | 48.571 | 70 | 34 | 2 | 23 | 91 | 146 | 214 | 9.28e-12 | 65.9 |
MsaG005667 | AT4G37180.1 | 54.237 | 59 | 27 | 0 | 19 | 77 | 205 | 263 | 9.45e-12 | 65.9 |
MsaG005667 | AT5G59570.2 | 53.571 | 56 | 25 | 1 | 22 | 77 | 139 | 193 | 1.09e-11 | 65.1 |
MsaG005667 | AT5G59570.1 | 53.571 | 56 | 25 | 1 | 22 | 77 | 139 | 193 | 1.09e-11 | 65.1 |
MsaG005667 | AT4G37180.2 | 54.237 | 59 | 27 | 0 | 19 | 77 | 212 | 270 | 1.20e-11 | 65.5 |
MsaG005667 | AT1G68670.1 | 59.184 | 49 | 20 | 0 | 29 | 77 | 220 | 268 | 2.06e-11 | 64.7 |
MsaG005667 | AT1G13300.1 | 46.479 | 71 | 32 | 1 | 7 | 77 | 170 | 234 | 4.70e-11 | 63.5 |
MsaG005667 | AT5G58080.1 | 50.000 | 72 | 30 | 2 | 6 | 77 | 181 | 246 | 4.89e-11 | 64.3 |
MsaG005667 | AT3G46640.2 | 52.727 | 55 | 25 | 1 | 23 | 77 | 143 | 196 | 6.31e-11 | 63.2 |
MsaG005667 | AT3G46640.1 | 52.727 | 55 | 25 | 1 | 23 | 77 | 143 | 196 | 6.31e-11 | 63.2 |
MsaG005667 | AT3G46640.3 | 45.333 | 75 | 40 | 1 | 3 | 77 | 123 | 196 | 8.22e-11 | 62.8 |
Find 73 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCAACTTTGCTACCAGATTT+TGG | 0.184199 | 1:-84034893 | MsaT005667.1:CDS |
CCTGAGAGAAATCAGATTCT+TGG | 0.196675 | 1:+84034840 | None:intergenic |
TAAACTTGTTCTTCAGTTGA+TGG | 0.274648 | 1:-84036063 | MsaT005667.1:CDS |
AGAAGCATGAGAGGTGAATT+AGG | 0.294301 | 1:-84035906 | MsaT005667.1:CDS |
ATCTGGTAGCAAAGTTGAAT+TGG | 0.294548 | 1:+84034898 | None:intergenic |
AGCCCTTCATGGTCAATTAA+TGG | 0.311061 | 1:-84033416 | MsaT005667.1:CDS |
GACAAGTAATGCTTCTTATT+CGG | 0.316581 | 1:-84033300 | MsaT005667.1:CDS |
GGAAGAGAAGGAGGAGGATC+AGG | 0.336536 | 1:-84036293 | MsaT005667.1:CDS |
GAATCTGATTCTTCTTTCAT+TGG | 0.354755 | 1:-84035341 | MsaT005667.1:CDS |
CAAGACATTGGTTTCTATGT+TGG | 0.368948 | 1:+84035432 | None:intergenic |
ACAGTAACAACTTCTCAAAA+AGG | 0.375282 | 1:-84035316 | MsaT005667.1:intron |
AAGACATTGGTTTCTATGTT+GGG | 0.380947 | 1:+84035433 | None:intergenic |
GCAGAACAAGAAAGGAATAA+AGG | 0.382336 | 1:-84034963 | MsaT005667.1:CDS |
ACCCATCAGGACCAGGGTTA+GGG | 0.390120 | 1:+84033240 | None:intergenic |
GACCTATCTTTAGCCATTTG+TGG | 0.393044 | 1:-84033158 | MsaT005667.1:CDS |
AACCCATCAGGACCAGGGTT+AGG | 0.394026 | 1:+84033239 | None:intergenic |
ATCAACTGAAGAACAAGTTT+AGG | 0.398456 | 1:+84036065 | None:intergenic |
ATCAAATCAATTGCCACAAA+TGG | 0.410193 | 1:+84033145 | None:intergenic |
ACAAAGCAACGATGAAGTTC+AGG | 0.428827 | 1:+84036218 | None:intergenic |
CTGCAGATCACCCATGGTAT+TGG | 0.429020 | 1:+84034991 | None:intergenic |
ACACGTCAAGAGCCATCTTC+AGG | 0.432180 | 1:-84036018 | MsaT005667.1:intron |
GTGAGGTTTATGCCAAAATC+TGG | 0.438737 | 1:+84034881 | None:intergenic |
ATGACAGAAAGAGCCCTTCA+TGG | 0.449662 | 1:-84033427 | MsaT005667.1:CDS |
CCCCTAACCCTGGTCCTGAT+GGG | 0.456881 | 1:-84033241 | MsaT005667.1:CDS |
AGTAGTAGTTGTGGAAGAGA+AGG | 0.462888 | 1:-84036305 | MsaT005667.1:CDS |
GTTCATGCTATTCAAACCCT+TGG | 0.466593 | 1:-84036197 | MsaT005667.1:CDS |
TAGAAAATGAGTAGTAGTTG+TGG | 0.467194 | 1:-84036314 | None:intergenic |
CATGGTATTGGCATTGGCAT+TGG | 0.470956 | 1:+84035003 | None:intergenic |
TCTGGTAGCAAAGTTGAATT+GGG | 0.475643 | 1:+84034899 | None:intergenic |
CTGCTAAACCCATCAGGACC+AGG | 0.477057 | 1:+84033233 | None:intergenic |
CATCATGCTCTTCAAGACAT+TGG | 0.479410 | 1:+84035420 | None:intergenic |
TGCCACAAATGGCTAAAGAT+AGG | 0.479487 | 1:+84033156 | None:intergenic |
AGTTGTGGAAGAGAAGGAGG+AGG | 0.483366 | 1:-84036299 | MsaT005667.1:CDS |
AGTAGTTGTGGAAGAGAAGG+AGG | 0.488905 | 1:-84036302 | MsaT005667.1:CDS |
CCAAGAATCTGATTTCTCTC+AGG | 0.491648 | 1:-84034840 | MsaT005667.1:intron |
GCATTACTTGTCTGAGGTGA+AGG | 0.495350 | 1:+84033311 | None:intergenic |
TTCAGTTGATGGATATCAAA+GGG | 0.496688 | 1:-84036052 | MsaT005667.1:CDS |
CATGCTATTCAAACCCTTGG+AGG | 0.504028 | 1:-84036194 | MsaT005667.1:CDS |
TTGTAGCTGCTAAACCCATC+AGG | 0.505555 | 1:+84033227 | None:intergenic |
AGAGCACATGTAGAAGTTGA+AGG | 0.510912 | 1:-84033377 | MsaT005667.1:CDS |
CAGCAGCTGCAGAACAAGAA+AGG | 0.510940 | 1:-84034971 | MsaT005667.1:CDS |
AATTGCCTCACTGATTTCAC+TGG | 0.511384 | 1:+84033277 | None:intergenic |
CATGTAGAAGTTGAAGGAGT+AGG | 0.522933 | 1:-84033371 | MsaT005667.1:CDS |
AATGAAAATGAACCTGAAGA+TGG | 0.525028 | 1:+84036006 | None:intergenic |
CAAAAGTCCCTCGTTTGAGA+TGG | 0.534114 | 1:-84036244 | MsaT005667.1:CDS |
ATCACCCATGGTATTGGCAT+TGG | 0.534408 | 1:+84034997 | None:intergenic |
TTAGAGATTTGAAAGAAGTG+AGG | 0.544979 | 1:+84034864 | None:intergenic |
CTCCATTAATTGACCATGAA+GGG | 0.546656 | 1:+84033414 | None:intergenic |
TATCATCTACTGTGAATGAA+AGG | 0.549767 | 1:-84033190 | MsaT005667.1:CDS |
CTTCAGTTGATGGATATCAA+AGG | 0.552892 | 1:-84036053 | MsaT005667.1:CDS |
TGTCTTGAAGAGCATGATGA+TGG | 0.559094 | 1:-84035416 | MsaT005667.1:CDS |
TGATGGGTTTAGCAGCTACA+AGG | 0.568771 | 1:-84033225 | MsaT005667.1:CDS |
CCCATCAGGACCAGGGTTAG+GGG | 0.569771 | 1:+84033241 | None:intergenic |
ACTCCATTAATTGACCATGA+AGG | 0.571573 | 1:+84033413 | None:intergenic |
CAGCTGCTGCAGATCACCCA+TGG | 0.582133 | 1:+84034985 | None:intergenic |
GTAGAAGTTGAAGGAGTAGG+AGG | 0.587674 | 1:-84033368 | MsaT005667.1:CDS |
ATGTTGAGCATTCTTTGATG+AGG | 0.590128 | 1:-84035367 | MsaT005667.1:CDS |
CAGATGTATAGAAGCATGAG+AGG | 0.614112 | 1:-84035915 | MsaT005667.1:CDS |
CTTACTATGATGACCTCCAA+GGG | 0.614845 | 1:+84036181 | None:intergenic |
AGAGAAGGAGGAGGATCAGG+AGG | 0.615008 | 1:-84036290 | MsaT005667.1:CDS |
CAGGAGTCCATCTCAAACGA+GGG | 0.615814 | 1:+84036237 | None:intergenic |
TGCTAAACCCATCAGGACCA+GGG | 0.616115 | 1:+84033234 | None:intergenic |
ACTTACTATGATGACCTCCA+AGG | 0.620124 | 1:+84036180 | None:intergenic |
TAAGAAGCATTACTTGTCTG+AGG | 0.629009 | 1:+84033305 | None:intergenic |
CCATCAGGACCAGGGTTAGG+GGG | 0.646226 | 1:+84033242 | None:intergenic |
CAATGCCAATGCCAATACCA+TGG | 0.649873 | 1:-84035002 | MsaT005667.1:CDS |
ACATAGTCATAAAAGCAGTA+CGG | 0.651015 | 1:+84035037 | None:intergenic |
AGAGGTGAATTAGGAAGACA+AGG | 0.660553 | 1:-84035897 | MsaT005667.1:intron |
TCAGGAGTCCATCTCAAACG+AGG | 0.669853 | 1:+84036236 | None:intergenic |
AATGCCAATGCCAATACCAT+GGG | 0.680737 | 1:-84035001 | MsaT005667.1:CDS |
GGTAGCAAAGTTGAATTGGG+TGG | 0.692739 | 1:+84034902 | None:intergenic |
GAGGATCAGGAGGAGCAGTG+AGG | 0.714959 | 1:-84036280 | MsaT005667.1:CDS |
TTCGGCCAGTGAAATCAGTG+AGG | 0.751752 | 1:-84033282 | MsaT005667.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 84033151 | 84036330 | 84033151 | ID=MsaG005667 |
Chr1 | mRNA | 84033151 | 84036330 | 84033151 | ID=MsaT005667.1;Parent=MsaG005667 |
Chr1 | exon | 84033151 | 84033462 | 84033151 | ID=MsaT005667.1.exon6;Parent=MsaT005667.1 |
Chr1 | CDS | 84033151 | 84033462 | 84033151 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Chr1 | exon | 84034841 | 84035144 | 84034841 | ID=MsaT005667.1.exon5;Parent=MsaT005667.1 |
Chr1 | CDS | 84034841 | 84035144 | 84034841 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Chr1 | exon | 84035317 | 84035467 | 84035317 | ID=MsaT005667.1.exon4;Parent=MsaT005667.1 |
Chr1 | CDS | 84035317 | 84035467 | 84035317 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Chr1 | exon | 84035898 | 84035934 | 84035898 | ID=MsaT005667.1.exon3;Parent=MsaT005667.1 |
Chr1 | CDS | 84035898 | 84035934 | 84035898 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Chr1 | exon | 84036019 | 84036095 | 84036019 | ID=MsaT005667.1.exon2;Parent=MsaT005667.1 |
Chr1 | CDS | 84036019 | 84036095 | 84036019 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Chr1 | exon | 84036186 | 84036330 | 84036186 | ID=MsaT005667.1.exon1;Parent=MsaT005667.1 |
Chr1 | CDS | 84036186 | 84036330 | 84036186 | ID=cds.MsaT005667.1;Parent=MsaT005667.1 |
Gene Sequence |
Protein sequence |