AlfalfaGEDB | MsaG005685

M. sativa ssp. caerulea / MsaG005685

KEGG: K16190
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	XP_013470329.1	94.129	528	21	5	1	527	1	519	0.0	1005

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	sp\|Q9ZVX2\|AMS_ARATH	48.162	544	228	19	6	530	5	513	6.96e-145	431

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	tr\|A0A072VRJ5\|A0A072VRJ5_MEDTR	94.129	528	21	5	1	527	1	519	0.0	1005

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005685	TF	bHLH

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG005685	0.838911	3.997496e-57	1.508310e-54
MsaG000479	MsaG005685	0.845676	6.574715e-59	3.080666e-56
MsaG000520	MsaG005685	0.802726	8.225542e-49	1.183089e-46
MsaG000842	MsaG005685	0.820592	1.109087e-52	2.477730e-50
MsaG001223	MsaG005685	0.805034	2.740932e-49	4.158803e-47
MsaG001307	MsaG005685	0.849608	5.510645e-60	2.947361e-57
MsaG001772	MsaG005685	0.826572	4.487521e-54	1.179113e-51
MsaG001828	MsaG005685	0.850981	2.280197e-60	1.278323e-57
MsaG002061	MsaG005685	0.830314	5.664719e-55	1.654156e-52
MsaG002209	MsaG005685	0.801673	1.351360e-48	1.897541e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	MtrunA17_Chr1g0211081	94.129	528	21	5	1	527	1	519	0.0	1005
MsaG005685	MtrunA17_Chr8g0365711	28.817	524	256	13	10	524	4	419	2.53e-60	204
MsaG005685	MtrunA17_Chr3g0131691	33.981	206	114	2	316	521	293	476	3.57e-32	129
MsaG005685	MtrunA17_Chr7g0252041	36.098	205	106	4	320	521	285	467	1.36e-30	124
MsaG005685	MtrunA17_Chr2g0298751	34.536	194	107	5	314	504	45	221	5.35e-22	95.1
MsaG005685	MtrunA17_Chr4g0048851	33.333	171	81	3	320	490	46	183	5.32e-20	88.6
MsaG005685	MtrunA17_Chr2g0320291	30.857	175	81	4	306	477	121	258	8.05e-18	84.3
MsaG005685	MtrunA17_Chr4g0028071	30.994	171	70	5	315	473	143	277	2.97e-17	83.2
MsaG005685	MtrunA17_Chr3g0141091	27.830	212	108	4	309	520	161	327	7.77e-16	79.0
MsaG005685	MtrunA17_Chr8g0346161	30.045	223	113	9	300	512	268	457	9.04e-15	76.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	AT2G16910.1	48.162	544	228	19	6	530	5	513	7.08e-146	431
MsaG005685	AT3G26744.1	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.4	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.2	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.6	36.612	183	92	2	320	499	306	467	3.39e-30	124
MsaG005685	AT1G12860.1	35.644	202	105	3	320	521	266	442	9.16e-30	122
MsaG005685	AT1G12860.2	36.667	180	92	2	320	499	266	423	8.42e-29	119
MsaG005685	AT1G10610.1	35.404	161	88	4	7	157	8	162	7.81e-25	107
MsaG005685	AT1G10610.1	25.837	209	116	4	319	522	262	436	1.16e-15	79.7
MsaG005685	AT5G57150.1	32.057	209	117	5	303	506	32	220	3.60e-20	90.5

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Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAAGCAGGAAGATGT+TGG	0.583119	1:+84232892	MsaT005685.1:CDS
AAAGGAGAGTGAAATAGTTG+AGG	0.586665	1:+84233429	MsaT005685.1:CDS
AAGAAGCAAGAACATGTTGT+TGG	0.475916	1:+84232475	MsaT005685.1:CDS
AAGAGCTCAACCAGTCCACC+AGG	0.565516	1:-84231467	None:intergenic
AAGAGGATGATGGAAAATAT+AGG	0.425274	1:+84232539	MsaT005685.1:CDS
AATGTTCCAAAAGCAGAACA+TGG	0.599725	1:+84232841	MsaT005685.1:CDS
ACATTATTGTTATTATTATT+TGG	0.140145	1:-84232823	None:intergenic
ACCCTTGTGACTGGTTACTG+TGG	0.657104	1:-84233250	None:intergenic
ACCTTCTCTGAAGAATACCA+AGG	0.692673	1:+84232328	MsaT005685.1:CDS
ACCTTGGTATTCTTCAGAGA+AGG	0.541843	1:-84232329	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	84230741	84233522	84230741	ID=MsaG005685
Chr1	mRNA	84230741	84233522	84230741	ID=MsaT005685.1;Parent=MsaG005685
Chr1	exon	84230741	84230844	84230741	ID=MsaT005685.1.exon1;Parent=MsaT005685.1
Chr1	CDS	84230741	84230844	84230741	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84230961	84231131	84230961	ID=MsaT005685.1.exon2;Parent=MsaT005685.1
Chr1	CDS	84230961	84231131	84230961	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84231232	84231310	84231232	ID=MsaT005685.1.exon3;Parent=MsaT005685.1
Chr1	CDS	84231232	84231310	84231232	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84231431	84231502	84231431	ID=MsaT005685.1.exon4;Parent=MsaT005685.1
Chr1	CDS	84231431	84231502	84231431	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84232055	84232948	84232055	ID=MsaT005685.1.exon5;Parent=MsaT005685.1
Chr1	CDS	84232055	84232948	84232055	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84233123	84233299	84233123	ID=MsaT005685.1.exon6;Parent=MsaT005685.1
Chr1	CDS	84233123	84233299	84233123	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84233415	84233522	84233415	ID=MsaT005685.1.exon7;Parent=MsaT005685.1
Chr1	CDS	84233415	84233522	84233415	ID=cds.MsaT005685.1;Parent=MsaT005685.1

Gene Sequence

>MsaT005685.1

ATGAACAATTTCATCATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTTGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACACCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACACCCAAGAACAAACTCATGTGATCTTCTTTCCCAACTTTCCACTTCCATACCTATAGATTCAGGGATTCATGCACAGGCTCTATTAACTAACCAACCCAATTGGTTGAACTATCCCAATAGCTTGGATCCAAACACTTTACATGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTGGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAAAATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCAAGAAGGGATGAACCACTCAATTGGTTTCAATTCAATGAGCAACATGCAATCGAATCCAATTGTGGGTGATGAAAATGATGGAAATAATACAAACAATATTTTCCATTCATCAGAGACATTGAATCTTCCACATGACATATCTGTATTGAACTTCATGCAACAGTTCAATTACAGTTACAATCAACAACAAAACAGAATCAAGAACGACGAAACCTTCTCTGAAGAATACCAAGGTTCTTTTCTTCAGGATCAAGAAAACAACAACACTCTCAAATCACACACAGAAGAGGTGCATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTGGACCCATTAGACACAAAAAAGAAGCAAGAACATGTTGTTGGTAGAGCAGATTCTATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCTTCTATTCTTGGAGATGCTATTGAATTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGTGTATATGTTGATGGTGTTCAAGTTCAACCAAATAATAATAACAATAATGTTCCAAAAGCAGAACATGGATTTCATGTTGGGAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTACTTTGTGAAGGTGTTTTGTGAGCACAGGCCAGGTGGTTTTGTGAAATTGATGGAGGCTTTGAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAATTATGAACAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCTTCATGCTGGAACTTGGAATCATGA

Protein sequence

>MsaT005685.1

MNNFIMQNFTERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPIDSGIHAQALLTNQPNWLNYPNSLDPNTLHETINGTHVLIPVPGGLVELFVTKQVGEDQNVIDFITSQCIVMVDQEGMNHSIGFNSMSNMQSNPIVGDENDGNNTNNIFHSSETLNLPHDISVLNFMQQFNYSYNQQQNRIKNDETFSEEYQGSFLQDQENNNTLKSHTEEVHDNKSLMTDNNQYMFVDPLDTKKKQEHVVGRADSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCVYVDGVQVQPNNNNNNVPKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEAQVEVAQIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDVMHATVTSHKGLVSNVFKVENYEQKKESEIVEAEEVRDSLLELTRNKSSCWNLES*