AlfalfaGEDB | MsaG005685

M. sativa ssp. caerulea / MsaG005685

KEGG: K16190
GO: GO:0000003 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048229 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048444 GO:0048448 GO:0048449 GO:0048455 GO:0048466 GO:0048608 GO:0048646 GO:0048653 GO:0048654 GO:0048655 GO:0048656 GO:0048657 GO:0048658 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1905392 GO:1905393 GO:1990837 GO:2000112 GO:2001141
PFAM: PF14215.9

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	XP_013470329.1	94.129	528	21	5	1	527	1	519	0.0	1005

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	sp\|Q9ZVX2\|AMS_ARATH	48.162	544	228	19	6	530	5	513	6.96e-145	431

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	tr\|A0A072VRJ5\|A0A072VRJ5_MEDTR	94.129	528	21	5	1	527	1	519	0.0	1005

TFs/TRs:

Gene ID	Type	Classification
MsaG005685	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000005	MsaG005685	0.838911	3.997496e-57	1.508310e-54
MsaG000479	MsaG005685	0.845676	6.574715e-59	3.080666e-56
MsaG000520	MsaG005685	0.802726	8.225542e-49	1.183089e-46
MsaG000842	MsaG005685	0.820592	1.109087e-52	2.477730e-50
MsaG001223	MsaG005685	0.805034	2.740932e-49	4.158803e-47
MsaG001307	MsaG005685	0.849608	5.510645e-60	2.947361e-57
MsaG001772	MsaG005685	0.826572	4.487521e-54	1.179113e-51
MsaG001828	MsaG005685	0.850981	2.280197e-60	1.278323e-57
MsaG002061	MsaG005685	0.830314	5.664719e-55	1.654156e-52
MsaG002209	MsaG005685	0.801673	1.351360e-48	1.897541e-46
MsaG002290	MsaG005685	0.837193	1.100535e-56	3.937825e-54
MsaG002405	MsaG005685	0.840025	2.058732e-57	8.043473e-55
MsaG002530	MsaG005685	0.837947	7.066995e-57	2.587665e-54
MsaG003292	MsaG005685	0.837945	7.074759e-57	2.590382e-54
MsaG003306	MsaG005685	0.877544	1.206113e-68	1.944205e-65
MsaG003375	MsaG005685	0.868842	9.789009e-66	1.080886e-62
MsaG003743	MsaG005685	0.822663	3.703209e-53	8.742419e-51
MsaG003740	MsaG005685	0.870372	3.123237e-66	3.676157e-63
MsaG004111	MsaG005685	0.836857	1.339796e-56	4.745228e-54
MsaG004199	MsaG005685	0.816974	7.287718e-52	1.481469e-49
MsaG004465	MsaG005685	0.835523	2.912548e-56	9.910280e-54
MsaG004510	MsaG005685	0.879090	3.480672e-69	6.024019e-66
MsaG004669	MsaG005685	0.844812	1.123332e-58	5.115871e-56
MsaG004820	MsaG005685	0.881550	4.642694e-70	9.010027e-67
MsaG005257	MsaG005685	0.821520	6.795498e-53	1.555899e-50
MsaG005455	MsaG005685	0.853551	4.265586e-61	2.616854e-58
MsaG005524	MsaG005685	0.818256	3.758512e-52	7.896706e-50
MsaG005685	MsaG005850	0.846023	5.295903e-59	2.510168e-56
MsaG005685	MsaG005881	0.883553	8.714694e-71	1.861267e-67
MsaG005685	MsaG006140	0.862049	1.319199e-63	1.109290e-60
MsaG005685	MsaG006586	0.811143	1.390305e-50	2.441413e-48
MsaG005685	MsaG006552	0.856356	6.599192e-62	4.479179e-59
MsaG005685	MsaG006563	0.809509	3.118706e-50	5.263324e-48
MsaG005685	MsaG006701	0.866944	3.957615e-65	4.044537e-62
MsaG005685	MsaG006813	0.865092	1.515570e-64	1.437188e-61
MsaG005685	MsaG007525	0.805665	2.023842e-49	3.116103e-47
MsaG005685	MsaG007546	0.803750	5.061039e-49	7.453670e-47
MsaG005685	MsaG007663	0.819012	2.536550e-52	5.435488e-50
MsaG005685	MsaG008183	0.815329	1.691938e-51	3.298026e-49
MsaG005685	MsaG009772	0.823335	2.586186e-53	6.217588e-51
MsaG005685	MsaG010004	0.861897	1.468043e-63	1.227198e-60
MsaG005685	MsaG010418	0.800257	2.621919e-48	3.565614e-46
MsaG005685	MsaG010633	0.817210	6.453811e-52	1.319983e-49
MsaG005685	MsaG010631	0.862246	1.148780e-63	9.733636e-61
MsaG005685	MsaG010703	0.816952	7.371193e-52	1.497582e-49
MsaG005685	MsaG010994	0.817560	5.388972e-52	1.112119e-49
MsaG005685	MsaG011179	0.854937	1.704563e-61	1.098707e-58
MsaG005685	MsaG011563	0.861503	1.934582e-63	1.592718e-60
MsaG005685	MsaG011578	0.849031	7.960885e-60	4.174505e-57
MsaG005685	MsaG011657	0.841769	7.215632e-58	2.978585e-55
MsaG005685	MsaG012442	0.907011	1.910737e-80	1.489959e-76
MsaG005685	MsaG012461	0.812935	5.681656e-51	1.042842e-48
MsaG005685	MsaG012595	0.813095	5.242025e-51	9.660191e-49
MsaG005685	MsaG012747	0.828619	1.455488e-54	4.050058e-52
MsaG005685	MsaG013086	0.851938	1.225664e-60	7.104893e-58
MsaG005685	MsaG013827	0.805184	2.550170e-49	3.882863e-47
MsaG005685	MsaG013810	0.908793	2.784982e-81	2.434114e-77
MsaG005685	MsaG015096	0.847658	1.900718e-59	9.515328e-57
MsaG005685	MsaG015358	0.811985	9.140975e-51	1.638692e-48
MsaG005685	MsaG015898	0.851758	1.378504e-60	7.939610e-58
MsaG005685	MsaG016390	0.861065	2.627196e-63	2.127157e-60
MsaG005685	MsaG016706	0.825019	1.044483e-53	2.628817e-51
MsaG005685	MsaG016827	0.802022	1.146700e-48	1.622956e-46
MsaG005685	MsaG017380	0.831200	3.444222e-55	1.031622e-52
MsaG005685	MsaG017418	0.813543	4.183572e-51	7.796522e-49
MsaG005685	MsaG017802	0.813850	3.584004e-51	6.730896e-49
MsaG005685	MsaG018097	0.818902	2.685970e-52	5.739022e-50
MsaG005685	MsaG018281	0.851151	2.042379e-60	1.151731e-57
MsaG005685	MsaG018368	0.812672	6.481313e-51	1.181844e-48
MsaG005685	MsaG018806	0.807509	8.297251e-50	1.334440e-47
MsaG005685	MsaG018860	0.808325	5.573948e-50	9.141872e-48
MsaG005685	MsaG018922	0.872995	4.257869e-67	5.608090e-64
MsaG005685	MsaG019031	0.806258	1.521109e-49	2.375124e-47
MsaG005685	MsaG019290	0.809365	3.348191e-50	5.630563e-48
MsaG005685	MsaG019292	0.800386	2.469436e-48	3.368096e-46
MsaG005685	MsaG019501	0.872215	7.736044e-67	9.851589e-64
MsaG005685	MsaG019629	0.840563	1.491938e-57	5.928069e-55
MsaG005685	MsaG020206	0.890487	2.076203e-73	6.277133e-70
MsaG005685	MsaG020335	0.858491	1.552188e-62	1.140085e-59
MsaG005685	MsaG020365	0.817844	4.651241e-52	9.669331e-50
MsaG005685	MsaG020498	0.816778	8.063042e-52	1.630782e-49
MsaG005685	MsaG020679	0.866344	6.130182e-65	6.111496e-62
MsaG005685	MsaG020894	0.806578	1.303160e-49	2.050264e-47
MsaG005685	MsaG021077	0.800987	1.864527e-48	2.577725e-46
MsaG005685	MsaG021079	0.816144	1.116020e-51	2.220939e-49
MsaG005685	MsaG021224	0.836964	1.258737e-56	4.472424e-54
MsaG005685	MsaG021729	0.811055	1.452878e-50	2.545802e-48
MsaG005685	MsaG021816	0.831451	2.989887e-55	9.021502e-53
MsaG005685	MsaG022192	0.800895	1.946574e-48	2.685541e-46
MsaG005685	MsaG022478	0.805610	2.078859e-49	3.196681e-47
MsaG005685	MsaG022584	0.821351	7.429258e-53	1.693427e-50
MsaG005685	MsaG023399	0.813973	3.366824e-51	6.342584e-49
MsaG005685	MsaG023662	0.816646	8.629664e-52	1.739383e-49
MsaG005685	MsaG023815	0.801365	1.561393e-48	2.177199e-46
MsaG005685	MsaG023832	0.805711	1.979863e-49	3.051694e-47
MsaG005685	MsaG023972	0.813075	5.295363e-51	9.753617e-49
MsaG005685	MsaG024027	0.836056	2.138444e-56	7.393123e-54
MsaG005685	MsaG024150	0.828718	1.377807e-54	3.844352e-52
MsaG005685	MsaG024882	0.835047	3.837324e-56	1.287182e-53
MsaG005685	MsaG025160	0.812297	7.820654e-51	1.412816e-48
MsaG005685	MsaG025252	0.832603	1.556970e-55	4.858137e-53
MsaG005685	MsaG026756	0.805383	2.317516e-49	3.544899e-47
MsaG005685	MsaG026770	0.868496	1.264259e-65	1.376497e-62
MsaG005685	MsaG026822	0.821340	7.474241e-53	1.703163e-50
MsaG005685	MsaG026890	0.835465	3.012325e-56	1.023177e-53
MsaG005685	MsaG027054	0.816658	8.572864e-52	1.728512e-49
MsaG005685	MsaG027127	0.802798	7.947453e-49	1.144994e-46
MsaG005685	MsaG027255	0.834864	4.264211e-56	1.422581e-53
MsaG005685	MsaG027342	0.859569	7.409547e-63	5.667136e-60
MsaG005685	MsaG027631	0.803107	6.867063e-49	9.964425e-47
MsaG005685	MsaG027630	0.810438	1.972283e-50	3.404397e-48
MsaG005685	MsaG027773	0.884124	5.377663e-71	1.180463e-67
MsaG005685	MsaG027969	0.821072	8.610208e-53	1.948217e-50
MsaG005685	MsaG027971	0.822932	3.208034e-53	7.628671e-51
MsaG005685	MsaG028242	0.824484	1.394728e-53	3.459321e-51
MsaG005685	MsaG028243	0.828742	1.359397e-54	3.795526e-52
MsaG005685	MsaG028553	0.834797	4.432443e-56	1.475738e-53
MsaG005685	MsaG028607	0.807954	6.680847e-50	1.086023e-47
MsaG005685	MsaG028787	0.871569	1.264775e-66	1.566792e-63
MsaG005685	MsaG028830	0.824871	1.131576e-53	2.836455e-51
MsaG005685	MsaG028985	0.815678	1.416511e-51	2.785662e-49
MsaG005685	MsaG029443	0.874681	1.154998e-67	1.637892e-64
MsaG005685	MsaG029650	0.862788	7.840765e-64	6.786518e-61
MsaG005685	MsaG029813	0.814083	3.184646e-51	6.015904e-49
MsaG005685	MsaG029892	0.833276	1.060940e-55	3.376486e-53
MsaG005685	MsaG029873	0.819574	1.891472e-52	4.113224e-50
MsaG005685	MsaG029875	0.894472	5.352820e-75	2.003521e-71
MsaG005685	MsaG030080	0.819698	1.773332e-52	3.868942e-50
MsaG005685	MsaG031612	0.868210	1.562728e-65	1.681538e-62
MsaG005685	MsaG031586	0.805420	2.277337e-49	3.486359e-47
MsaG005685	MsaG031750	0.811715	1.046204e-50	1.863087e-48
MsaG005685	MsaG033966	0.801493	1.470657e-48	2.056597e-46
MsaG005685	MsaG034409	0.802742	8.160987e-49	1.174250e-46
MsaG005685	MsaG034740	0.858431	1.617894e-62	1.185638e-59
MsaG005685	MsaG035122	0.816867	7.700496e-52	1.561027e-49
MsaG005685	MsaG035147	0.825071	1.015645e-53	2.559894e-51
MsaG005685	MsaG036511	0.817542	5.437477e-52	1.121626e-49
MsaG005685	MsaG036954	0.846071	5.142140e-59	2.441146e-56
MsaG005685	MsaG038022	0.851240	1.928807e-60	1.091027e-57
MsaG005685	MsaG038329	0.838940	3.929454e-57	1.483981e-54
MsaG005685	MsaG040366	0.890440	2.166418e-73	6.534345e-70
MsaG005685	MsaG040696	0.820263	1.318486e-52	2.920240e-50
MsaG005685	MsaG041117	0.838619	4.752248e-57	1.776774e-54
MsaG005685	MsaG042750	0.877659	1.100218e-68	1.782696e-65
MsaG005685	MsaG042972	0.829890	7.178298e-55	2.070962e-52
MsaG005685	MsaG043344	0.829026	1.161310e-54	3.268598e-52
MsaG005685	MsaG044707	0.887946	1.988670e-72	5.275382e-69
MsaG005685	MsaG045254	0.837292	1.038463e-56	3.726803e-54
MsaG005685	MsaG045309	0.830957	3.948835e-55	1.174539e-52
MsaG005685	MsaG045261	0.858078	2.057826e-62	1.488183e-59
MsaG005685	MsaG045320	0.860771	3.224367e-63	2.582030e-60
MsaG005685	MsaG045515	0.803658	5.285774e-49	7.768052e-47
MsaG005685	MsaG045582	0.809136	3.746813e-50	6.266555e-48
MsaG005685	MsaG045595	0.840547	1.506874e-57	5.984300e-55
MsaG005685	MsaG045766	0.814301	2.853210e-51	5.419321e-49
MsaG005685	MsaG045883	0.818124	4.025230e-52	8.428533e-50
MsaG005685	MsaG046223	0.864519	2.288023e-64	2.120498e-61
MsaG005685	MsaG046245	0.804830	3.022424e-49	4.564163e-47
MsaG005685	MsaG046181	0.818942	2.630257e-52	5.626105e-50
MsaG005685	MsaG046263	0.859718	6.686909e-63	5.143796e-60
MsaG005685	MsaG046532	0.815848	1.298742e-51	2.565048e-49
MsaG005685	MsaG046491	0.833433	9.698532e-56	3.100981e-53
MsaG005685	MsaG046492	0.858157	1.949701e-62	1.414172e-59
MsaG005685	MsaG046608	0.802347	9.839527e-49	1.403062e-46
MsaG005685	MsaG005822	0.814633	2.410331e-51	4.616412e-49
MsaG005685	MsaG001553	0.821594	6.534069e-53	1.498980e-50
MsaG005685	MsaG001996	0.807174	9.763345e-50	1.557746e-47
MsaG005685	MsaG001256	0.842269	5.331266e-58	2.236062e-55
MsaG005685	MsaG003316	0.809218	3.598859e-50	6.030666e-48
MsaG005685	MsaG001632	0.818326	3.624289e-52	7.628545e-50
MsaG005685	MsaG002372	0.874225	1.645938e-67	2.288053e-64
MsaG005685	MsaG001709	0.886591	6.485728e-72	1.606989e-68
MsaG005685	MsaG004869	0.815487	1.561010e-51	3.054936e-49
MsaG005685	MsaG001683	0.839927	2.183244e-57	8.503587e-55
MsaG005685	MsaG002115	0.845061	9.629389e-59	4.421605e-56
MsaG005685	MsaG002551	0.819657	1.811677e-52	3.948246e-50
MsaG005685	MsaG001614	0.868520	1.242342e-65	1.353919e-62
MsaG005685	MsaG007899	0.838060	6.611414e-57	2.429354e-54
MsaG005685	MsaG011523	0.840248	1.801759e-57	7.088749e-55
MsaG005685	MsaG017032	0.829204	1.052084e-54	2.975891e-52
MsaG005685	MsaG019334	0.834500	5.259834e-56	1.735738e-53
MsaG005685	MsaG027071	0.824505	1.378486e-53	3.421105e-51
MsaG005685	MsaG027837	0.801502	1.464558e-48	2.048492e-46
MsaG005685	MsaG027119	0.829521	8.820461e-55	2.517899e-52
MsaG005685	MsaG027196	0.816133	1.122610e-51	2.233349e-49
MsaG005685	MsaG032588	0.839254	3.260893e-57	1.243507e-54
MsaG005685	MsaG034393	0.862648	8.654963e-64	7.449977e-61
MsaG005685	MsaG032019	0.839256	3.257181e-57	1.242171e-54
MsaG005685	MsaG032681	0.914612	3.874333e-84	4.982321e-80
MsaG005685	MsaG031725	0.829294	1.000614e-54	2.837756e-52
MsaG005685	MsaG034413	0.842276	5.308577e-58	2.227086e-55
MsaG005685	MsaG031111	0.831211	3.422110e-55	1.025343e-52
MsaG005685	MsaG034268	0.899023	6.836088e-77	3.303555e-73
MsaG005685	MsaG030868	0.838653	4.657961e-57	1.743359e-54
MsaG005685	MsaG031297	0.824449	1.421403e-53	3.522161e-51
MsaG005685	MsaG040050	0.865577	1.068642e-64	1.033070e-61
MsaG005685	MsaG036566	0.820033	1.487608e-52	3.274728e-50
MsaG005685	MsaG043527	0.822289	4.518739e-53	1.056068e-50
MsaG005685	MsaG042308	0.801670	1.352984e-48	1.899702e-46
MsaG005685	MsaG044878	0.835980	2.234261e-56	7.706850e-54
MsaG005685	MsaG042389	0.868556	1.209883e-65	1.320451e-62
MsaG005685	MsaG041796	0.861075	2.608494e-63	2.112771e-60
MsaG005685	MsaG043311	0.802052	1.130361e-48	1.600962e-46
MsaG005685	MsaG041547	0.831543	2.838656e-55	8.588436e-53

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	MtrunA17_Chr1g0211081	94.129	528	21	5	1	527	1	519	0.0	1005
MsaG005685	MtrunA17_Chr8g0365711	28.817	524	256	13	10	524	4	419	2.53e-60	204
MsaG005685	MtrunA17_Chr3g0131691	33.981	206	114	2	316	521	293	476	3.57e-32	129
MsaG005685	MtrunA17_Chr7g0252041	36.098	205	106	4	320	521	285	467	1.36e-30	124
MsaG005685	MtrunA17_Chr2g0298751	34.536	194	107	5	314	504	45	221	5.35e-22	95.1
MsaG005685	MtrunA17_Chr4g0048851	33.333	171	81	3	320	490	46	183	5.32e-20	88.6
MsaG005685	MtrunA17_Chr2g0320291	30.857	175	81	4	306	477	121	258	8.05e-18	84.3
MsaG005685	MtrunA17_Chr4g0028071	30.994	171	70	5	315	473	143	277	2.97e-17	83.2
MsaG005685	MtrunA17_Chr3g0141091	27.830	212	108	4	309	520	161	327	7.77e-16	79.0
MsaG005685	MtrunA17_Chr8g0346161	30.045	223	113	9	300	512	268	457	9.04e-15	76.6
MsaG005685	MtrunA17_Chr5g0411541	54.930	71	32	0	309	379	144	214	1.99e-14	74.7
MsaG005685	MtrunA17_Chr1g0185621	27.570	214	122	6	315	519	464	653	2.32e-14	75.9
MsaG005685	MtrunA17_Chr5g0400661	29.412	187	110	7	314	499	142	307	3.12e-14	73.9
MsaG005685	MtrunA17_Chr5g0411341	27.803	223	128	7	305	519	472	669	1.14e-13	73.9
MsaG005685	MtrunA17_Chr8g0386921	31.720	186	111	6	301	479	386	562	1.21e-13	73.6
MsaG005685	MtrunA17_Chr7g0260841	42.045	88	50	1	289	376	324	410	1.49e-13	73.2
MsaG005685	MtrunA17_Chr7g0225901	28.492	179	100	5	307	485	74	224	3.26e-13	69.7
MsaG005685	MtrunA17_Chr4g0054581	25.862	174	104	4	313	485	190	339	3.85e-13	71.2
MsaG005685	MtrunA17_Chr7g0275821	55.556	54	24	0	325	378	256	309	1.58e-12	69.7
MsaG005685	MtrunA17_Chr8g0366751	30.723	166	90	5	325	486	466	610	1.84e-12	70.1
MsaG005685	MtrunA17_Chr8g0346151	40.260	77	44	1	300	374	256	332	6.30e-12	67.8
MsaG005685	MtrunA17_Chr5g0400671	33.000	100	60	1	293	385	119	218	1.24e-11	66.2
MsaG005685	MtrunA17_Chr5g0400621	42.222	90	47	3	308	397	145	229	1.81e-11	65.5
MsaG005685	MtrunA17_Chr4g0048891	37.624	101	57	2	284	378	2	102	1.94e-11	62.0
MsaG005685	MtrunA17_Chr2g0333621	26.977	215	123	6	276	485	90	275	2.62e-11	65.1
MsaG005685	MtrunA17_Chr2g0307131	28.161	174	97	5	312	485	170	315	2.74e-11	65.1
MsaG005685	MtrunA17_Chr4g0049331	49.091	55	28	0	322	376	136	190	2.83e-11	64.7
MsaG005685	MtrunA17_Chr6g0468491	29.474	190	99	8	299	485	116	273	4.45e-11	64.3
MsaG005685	MtrunA17_Chr4g0054571	36.111	72	46	0	305	376	134	205	6.47e-11	63.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005685	AT2G16910.1	48.162	544	228	19	6	530	5	513	7.08e-146	431
MsaG005685	AT3G26744.1	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.4	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.2	35.789	190	98	2	320	506	306	474	1.10e-30	125
MsaG005685	AT3G26744.6	36.612	183	92	2	320	499	306	467	3.39e-30	124
MsaG005685	AT1G12860.1	35.644	202	105	3	320	521	266	442	9.16e-30	122
MsaG005685	AT1G12860.2	36.667	180	92	2	320	499	266	423	8.42e-29	119
MsaG005685	AT1G10610.1	35.404	161	88	4	7	157	8	162	7.81e-25	107
MsaG005685	AT1G10610.1	25.837	209	116	4	319	522	262	436	1.16e-15	79.7
MsaG005685	AT5G57150.1	32.057	209	117	5	303	506	32	220	3.60e-20	90.5
MsaG005685	AT5G57150.5	32.178	202	112	5	303	499	32	213	6.66e-20	89.0
MsaG005685	AT5G57150.3	32.178	202	112	5	303	499	33	214	9.44e-20	88.6
MsaG005685	AT5G57150.2	32.178	202	112	5	303	499	33	214	1.04e-19	88.6
MsaG005685	AT5G57150.4	32.178	202	112	5	303	499	33	214	1.41e-19	89.0
MsaG005685	AT2G28160.2	29.878	164	89	4	313	476	123	260	9.30e-17	81.6
MsaG005685	AT2G28160.1	29.878	164	89	4	313	476	123	260	9.32e-17	82.0
MsaG005685	AT1G10610.2	32.836	134	75	3	33	157	5	132	1.10e-16	82.8
MsaG005685	AT1G10610.2	25.837	209	116	4	319	522	232	406	1.08e-15	79.7
MsaG005685	AT4G21330.1	27.053	207	120	4	319	525	30	205	1.97e-16	78.6
MsaG005685	AT5G46760.1	31.481	162	87	4	325	486	419	556	2.47e-16	82.4
MsaG005685	AT5G65640.1	28.829	222	122	5	309	530	166	351	7.15e-16	79.7
MsaG005685	AT1G10610.3	26.344	186	103	3	319	499	165	321	8.49e-16	79.3
MsaG005685	AT1G63650.3	30.636	173	102	4	324	492	408	566	8.86e-16	80.9
MsaG005685	AT1G63650.1	30.636	173	102	4	324	492	408	566	8.86e-16	80.9
MsaG005685	AT1G63650.2	30.636	173	102	4	324	492	408	566	8.86e-16	80.9
MsaG005685	AT2G46510.1	44.086	93	47	1	306	393	375	467	8.88e-16	80.9
MsaG005685	AT4G29930.1	28.856	201	120	5	320	513	53	237	2.22e-15	76.6
MsaG005685	AT5G65640.2	57.746	71	30	0	309	379	166	236	6.30e-15	75.9
MsaG005685	AT4G17880.1	29.412	187	99	5	305	486	395	553	8.38e-15	77.8
MsaG005685	AT5G10570.1	29.577	213	103	6	311	518	138	308	9.61e-15	75.9
MsaG005685	AT4G29930.3	28.261	184	111	4	320	496	53	222	2.16e-14	73.9
MsaG005685	AT4G29930.7	28.261	184	111	4	320	496	53	222	2.16e-14	73.9
MsaG005685	AT4G29930.4	55.000	60	27	0	320	379	53	112	4.48e-14	71.2
MsaG005685	AT4G29930.2	55.000	60	27	0	320	379	53	112	6.11e-14	71.6
MsaG005685	AT4G29930.5	55.000	60	27	0	320	379	53	112	6.52e-14	72.0
MsaG005685	AT4G29930.6	55.000	60	27	0	320	379	53	112	6.55e-14	71.6
MsaG005685	AT4G37850.2	27.059	170	98	3	316	485	147	290	2.32e-13	71.6
MsaG005685	AT4G37850.1	27.059	170	98	3	316	485	147	290	2.32e-13	71.6
MsaG005685	AT5G41315.1	28.877	187	111	7	313	492	436	607	1.97e-12	70.5
MsaG005685	AT5G41315.2	28.877	187	111	7	313	492	444	615	2.00e-12	70.5
MsaG005685	AT5G41315.3	28.877	187	111	7	313	492	441	612	2.05e-12	70.1
MsaG005685	AT1G01260.1	42.045	88	49	2	292	378	404	490	2.26e-12	70.1
MsaG005685	AT1G01260.2	42.045	88	49	2	292	378	404	490	2.26e-12	70.1
MsaG005685	AT1G01260.3	42.045	88	49	2	292	378	404	490	2.26e-12	70.1
MsaG005685	AT4G09820.1	26.627	169	74	3	322	488	364	484	5.21e-12	68.6
MsaG005685	AT4G16430.1	43.421	76	38	1	306	376	300	375	6.18e-12	68.2
MsaG005685	AT3G24140.2	27.895	190	110	6	322	499	199	373	9.51e-12	67.4
MsaG005685	AT1G32640.1	27.551	196	110	4	325	520	456	619	9.71e-12	68.2
MsaG005685	AT3G24140.1	27.895	190	110	6	322	499	199	373	1.04e-11	67.4
MsaG005685	AT2G22750.4	26.316	171	103	3	315	485	148	295	7.66e-11	63.9
MsaG005685	AT4G00870.1	40.323	62	37	0	325	386	253	314	8.00e-11	64.7
MsaG005685	AT2G22750.5	26.316	171	103	3	315	485	144	291	8.15e-11	63.9
MsaG005685	AT2G22750.3	26.316	171	103	3	315	485	148	295	8.29e-11	63.9

Find 106 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACATTATTGTTATTATTATT+TGG	0.140145	1:-84232823	None:intergenic
CTTGATAGAGCTTCTATTCT+TGG	0.152880	1:+84232676	MsaT005685.1:CDS
CTATCAAGCTTTGAGATTCT+TGG	0.205780	1:-84232661	None:intergenic
CTCTTGTTGGTTTGAATGGC+TGG	0.239275	1:+84230784	MsaT005685.1:CDS
TGAAATCCATGTTCTGCTTT+TGG	0.239465	1:-84232847	None:intergenic
ATAGAATTATGAACAGAAAA+AGG	0.296948	1:+84233411	MsaT005685.1:intron
CAGCAACAAGGTTCTTTGAT+TGG	0.308174	1:-84232582	None:intergenic
AGATCACATGAGTTTGTTCT+TGG	0.337642	1:-84231070	None:intergenic
GTGGAAGTGGCTCAGATAGA+TGG	0.338551	1:+84233129	MsaT005685.1:CDS
GTTATATAACCTTCGTTCAT+TGG	0.349149	1:+84232636	MsaT005685.1:CDS
GGTGTTCTTCTCCACCATTT+TGG	0.356060	1:-84231006	None:intergenic
GAACTTACATGTAAAGTGTT+TGG	0.359394	1:-84231296	None:intergenic
GAAGGAAGAAACTGAATGAT+AGG	0.368436	1:+84232614	MsaT005685.1:CDS
CAAATCTTCATGCTGGAACT+TGG	0.371640	1:+84233492	MsaT005685.1:CDS
AGACCTCTTGTTGGTTTGAA+TGG	0.376737	1:+84230780	MsaT005685.1:CDS
GTGTTTGGATCCAAGCTATT+GGG	0.381111	1:-84231281	None:intergenic
TAGGTATGGAAGTGGAAAGT+TGG	0.382059	1:-84231099	None:intergenic
ATTGGGATAGTTCAACCAAT+TGG	0.386734	1:-84231264	None:intergenic
GATTCCAGTGCCTGGTGGAC+TGG	0.406904	1:+84231457	MsaT005685.1:CDS
CAGAACATGGATTTCATGTT+GGG	0.411727	1:+84232854	MsaT005685.1:CDS
TATATATACCCTGAATCTAT+AGG	0.413784	1:-84231118	None:intergenic
TGAGCTCTTTGTAACTAAAC+AGG	0.419409	1:+84231481	MsaT005685.1:CDS
GGTTGGGATGTTGTTGTGGT+GGG	0.420257	1:+84230972	MsaT005685.1:CDS
AAGAGGATGATGGAAAATAT+AGG	0.425274	1:+84232539	MsaT005685.1:CDS
AGTGTTTGGATCCAAGCTAT+TGG	0.426318	1:-84231282	None:intergenic
ACTTCCATACCTATAGATTC+AGG	0.426419	1:+84231109	MsaT005685.1:CDS
TTTCCCTGTCTCTTCATGTA+GGG	0.439137	1:+84231030	MsaT005685.1:CDS
TTGGGATAGTTCAACCAATT+GGG	0.440118	1:-84231263	None:intergenic
TATTAACTAACCAACCCAAT+TGG	0.442270	1:+84231249	MsaT005685.1:CDS
TATAGGAGAAGAAGTGGAAA+AGG	0.445604	1:+84232556	MsaT005685.1:CDS
AGGTATGGAAGTGGAAAGTT+GGG	0.445933	1:-84231098	None:intergenic
GAAGGGATGAACCACTCAAT+TGG	0.446434	1:+84232118	MsaT005685.1:CDS
GAGAGATTAAGACCTCTTGT+TGG	0.450531	1:+84230771	MsaT005685.1:CDS
ATGGAGGCTTTGAACACTTT+AGG	0.460171	1:+84233210	MsaT005685.1:CDS
TTATATATAGGTATCTTGAA+TGG	0.460510	1:+84230951	MsaT005685.1:intron
AGTAACTGTGTATATGTTGA+TGG	0.466614	1:+84232787	MsaT005685.1:CDS
TGGTTGGGATGTTGTTGTGG+TGG	0.468844	1:+84230971	MsaT005685.1:CDS
ATATAGGTATCTTGAATGGT+TGG	0.468983	1:+84230955	MsaT005685.1:intron
GCAGAACATGGATTTCATGT+TGG	0.469960	1:+84232853	MsaT005685.1:CDS
GGAAAATATAGGAGAAGAAG+TGG	0.472548	1:+84232550	MsaT005685.1:CDS
GATCACATGAGTTTGTTCTT+GGG	0.473126	1:-84231069	None:intergenic
TCTTGTTGGTTTGAATGGCT+GGG	0.473478	1:+84230785	MsaT005685.1:CDS
GATTCAATGTCTCTGATGAA+TGG	0.473958	1:-84232219	None:intergenic
AAGAAGCAAGAACATGTTGT+TGG	0.475916	1:+84232475	MsaT005685.1:CDS
GCTGGGATTACTGTGTCTAC+TGG	0.476054	1:+84230802	MsaT005685.1:CDS
GGCTTTGAACACTTTAGGCA+TGG	0.486692	1:+84233215	MsaT005685.1:CDS
ATGAATATTGCAGGCACAAG+TGG	0.489997	1:+84233110	MsaT005685.1:intron
TATAGGTATCTTGAATGGTT+GGG	0.493698	1:+84230956	MsaT005685.1:intron
TAATAATCAATATATGTTTG+TGG	0.498103	1:+84232435	MsaT005685.1:CDS
GTTGAACTATCCCAATAGCT+TGG	0.501147	1:+84231271	MsaT005685.1:CDS
CAGAATGAAGAAGAGGATGA+TGG	0.501916	1:+84232529	MsaT005685.1:CDS
ATTGAACAGGATTCATGCAC+AGG	0.504490	1:+84231223	MsaT005685.1:intron
TTCTCTTCCTCTCAGCAACA+AGG	0.506548	1:-84232594	None:intergenic
GAATGGTTGGGATGTTGTTG+TGG	0.510919	1:+84230968	MsaT005685.1:CDS
GTATCCCTACATGAAGAGAC+AGG	0.511754	1:-84231034	None:intergenic
ATACCCTGAATCTATAGGTA+TGG	0.513797	1:-84231113	None:intergenic
GGGAGTGAAAGCAACCAAAA+TGG	0.520448	1:+84230992	MsaT005685.1:CDS
TGGAAGTGGCTCAGATAGAT+GGG	0.522256	1:+84233130	MsaT005685.1:CDS
TGAGACAAGACCCTTGTGAC+TGG	0.522381	1:-84233259	None:intergenic
CATGGATTTCATGTTGGGAA+TGG	0.525371	1:+84232859	MsaT005685.1:CDS
ATTGCAGGCACAAGTGGAAG+TGG	0.525672	1:+84233116	MsaT005685.1:intron
TGAATCTATAGGTATGGAAG+TGG	0.528440	1:-84231107	None:intergenic
CACGGAACAAATCTTCATGC+TGG	0.531543	1:+84233485	MsaT005685.1:CDS
CTTCCATACCTATAGATTCA+GGG	0.537250	1:+84231110	MsaT005685.1:CDS
ATGCAATCGAATCCAATTGT+GGG	0.539218	1:+84232160	MsaT005685.1:CDS
ACCTTGGTATTCTTCAGAGA+AGG	0.541843	1:-84232329	None:intergenic
CTATGTTTCAAAACAAAAGC+AGG	0.545019	1:+84232882	MsaT005685.1:CDS
GGAAATTAAGTGAAGATCAA+AGG	0.546606	1:+84230823	MsaT005685.1:CDS
CATGCAATCGAATCCAATTG+TGG	0.546804	1:+84232159	MsaT005685.1:CDS
GATAGTTCAACCAATTGGGT+TGG	0.554141	1:-84231259	None:intergenic
TACATGAAGAGACAGGGAAA+AGG	0.554895	1:-84231027	None:intergenic
TTGAATTGAAACCAATTGAG+TGG	0.557955	1:-84232129	None:intergenic
CAGGCACTGGAATCAAAACA+TGG	0.559119	1:-84231448	None:intergenic
CAGTGATCAGAATGAAGAAG+AGG	0.559858	1:+84232522	MsaT005685.1:CDS
TTGTTGCTGAGAGGAAGAGA+AGG	0.562094	1:+84232596	MsaT005685.1:CDS
AAGAGCTCAACCAGTCCACC+AGG	0.565516	1:-84231467	None:intergenic
ATCAATTTCACAAAACCACC+TGG	0.575508	1:-84233189	None:intergenic
TCAACCAGTCCACCAGGCAC+TGG	0.579883	1:-84231461	None:intergenic
GATCCTGAAGAAAAGAACCT+TGG	0.582504	1:-84232345	None:intergenic
AAACAAAAGCAGGAAGATGT+TGG	0.583119	1:+84232892	MsaT005685.1:CDS
ATCTCAATGCATTGTCATGG+TGG	0.583356	1:+84232090	MsaT005685.1:CDS
TGACAAGCAGACACAGCAGA+TGG	0.586592	1:+84232924	MsaT005685.1:CDS
AAAGGAGAGTGAAATAGTTG+AGG	0.586665	1:+84233429	MsaT005685.1:CDS
CACATCTCAATGCATTGTCA+TGG	0.588350	1:+84232087	MsaT005685.1:CDS
TTCAATACAGATATGTCATG+TGG	0.598259	1:-84232244	None:intergenic
AATGTTCCAAAAGCAGAACA+TGG	0.599725	1:+84232841	MsaT005685.1:CDS
AGAGCTTCAAGATGAACTTG+AGG	0.601650	1:+84232741	MsaT005685.1:CDS
TCTCAAATCACACACAGAAG+AGG	0.606938	1:+84232384	MsaT005685.1:CDS
ATTGTCATGGTGGATCAAGA+AGG	0.607678	1:+84232100	MsaT005685.1:CDS
CAAAGAACCTTGTTGCTGAG+AGG	0.619036	1:+84232587	MsaT005685.1:CDS
CTTGAGGAAAATTCAGACAC+AGG	0.625559	1:+84232757	MsaT005685.1:CDS
TGCCACAGTAACCAGTCACA+AGG	0.625627	1:+84233248	MsaT005685.1:CDS
AGATGCTATTGAATTTGTGA+AGG	0.628469	1:+84232699	MsaT005685.1:CDS
CAGCCATTCAAACCAACAAG+AGG	0.632565	1:-84230783	None:intergenic
ATTGTGGGTGATGAAAATGA+TGG	0.641485	1:+84232175	MsaT005685.1:CDS
AGTGAAAGCAACCAAAATGG+TGG	0.646392	1:+84230995	MsaT005685.1:CDS
ATTCACTACTAGAGCTGACA+CGG	0.647595	1:+84233467	MsaT005685.1:CDS
TTCTTGGAACCAATGAACGA+AGG	0.654816	1:-84232645	None:intergenic
ACCCTTGTGACTGGTTACTG+TGG	0.657104	1:-84233250	None:intergenic
TTGTCATGGTGGATCAAGAA+GGG	0.669108	1:+84232101	MsaT005685.1:CDS
TGGGAATGAGTACTTTGTGA+AGG	0.678653	1:+84233149	MsaT005685.1:CDS
CAAGCAGACACAGCAGATGG+AGG	0.682677	1:+84232927	MsaT005685.1:CDS
TATCCCTACATGAAGAGACA+GGG	0.687876	1:-84231033	None:intergenic
ACCTTCTCTGAAGAATACCA+AGG	0.692673	1:+84232328	MsaT005685.1:CDS
GCCACAGTAACCAGTCACAA+GGG	0.696830	1:+84233249	MsaT005685.1:CDS
AGGCACTGGAATCAAAACAT+GGG	0.706180	1:-84231447	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	84230741	84233522	84230741	ID=MsaG005685
Chr1	mRNA	84230741	84233522	84230741	ID=MsaT005685.1;Parent=MsaG005685
Chr1	exon	84230741	84230844	84230741	ID=MsaT005685.1.exon1;Parent=MsaT005685.1
Chr1	CDS	84230741	84230844	84230741	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84230961	84231131	84230961	ID=MsaT005685.1.exon2;Parent=MsaT005685.1
Chr1	CDS	84230961	84231131	84230961	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84231232	84231310	84231232	ID=MsaT005685.1.exon3;Parent=MsaT005685.1
Chr1	CDS	84231232	84231310	84231232	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84231431	84231502	84231431	ID=MsaT005685.1.exon4;Parent=MsaT005685.1
Chr1	CDS	84231431	84231502	84231431	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84232055	84232948	84232055	ID=MsaT005685.1.exon5;Parent=MsaT005685.1
Chr1	CDS	84232055	84232948	84232055	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84233123	84233299	84233123	ID=MsaT005685.1.exon6;Parent=MsaT005685.1
Chr1	CDS	84233123	84233299	84233123	ID=cds.MsaT005685.1;Parent=MsaT005685.1
Chr1	exon	84233415	84233522	84233415	ID=MsaT005685.1.exon7;Parent=MsaT005685.1
Chr1	CDS	84233415	84233522	84233415	ID=cds.MsaT005685.1;Parent=MsaT005685.1

Gene Sequence

>MsaT005685.1

ATGAACAATTTCATCATGCAAAACTTTACTGAGAGATTAAGACCTCTTGTTGGTTTGAATGGCTGGGATTACTGTGTCTACTGGAAATTAAGTGAAGATCAAAGGTATCTTGAATGGTTGGGATGTTGTTGTGGTGGGAGTGAAAGCAACCAAAATGGTGGAGAAGAACACCTTTTCCCTGTCTCTTCATGTAGGGATACAATGTTTTCACACCCAAGAACAAACTCATGTGATCTTCTTTCCCAACTTTCCACTTCCATACCTATAGATTCAGGGATTCATGCACAGGCTCTATTAACTAACCAACCCAATTGGTTGAACTATCCCAATAGCTTGGATCCAAACACTTTACATGAAACAATTAATGGGACCCATGTTTTGATTCCAGTGCCTGGTGGACTGGTTGAGCTCTTTGTAACTAAACAGGTTGGTGAAGATCAAAATGTAATAGATTTTATCACATCTCAATGCATTGTCATGGTGGATCAAGAAGGGATGAACCACTCAATTGGTTTCAATTCAATGAGCAACATGCAATCGAATCCAATTGTGGGTGATGAAAATGATGGAAATAATACAAACAATATTTTCCATTCATCAGAGACATTGAATCTTCCACATGACATATCTGTATTGAACTTCATGCAACAGTTCAATTACAGTTACAATCAACAACAAAACAGAATCAAGAACGACGAAACCTTCTCTGAAGAATACCAAGGTTCTTTTCTTCAGGATCAAGAAAACAACAACACTCTCAAATCACACACAGAAGAGGTGCATGATAACAAAAGCTTGATGACAGATAATAATCAATATATGTTTGTGGACCCATTAGACACAAAAAAGAAGCAAGAACATGTTGTTGGTAGAGCAGATTCTATGTCAGATTGCAGTGATCAGAATGAAGAAGAGGATGATGGAAAATATAGGAGAAGAAGTGGAAAAGGAAACCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGGAAGAAACTGAATGATAGGTTATATAACCTTCGTTCATTGGTTCCAAGAATCTCAAAGCTTGATAGAGCTTCTATTCTTGGAGATGCTATTGAATTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTTCAAGATGAACTTGAGGAAAATTCAGACACAGGAACTGAAAGTAACTGTGTATATGTTGATGGTGTTCAAGTTCAACCAAATAATAATAACAATAATGTTCCAAAAGCAGAACATGGATTTCATGTTGGGAATGGCTATGTTTCAAAACAAAAGCAGGAAGATGTTGGTACTGTTACTGACAAGCAGACACAGCAGATGGAGGCACAAGTGGAAGTGGCTCAGATAGATGGGAATGAGTACTTTGTGAAGGTGTTTTGTGAGCACAGGCCAGGTGGTTTTGTGAAATTGATGGAGGCTTTGAACACTTTAGGCATGGATGTAATGCATGCCACAGTAACCAGTCACAAGGGTCTTGTCTCAAATGTTTTTAAAGTTGAGAATTATGAACAGAAAAAGGAGAGTGAAATAGTTGAGGCTGAAGAAGTTAGAGATTCACTACTAGAGCTGACACGGAACAAATCTTCATGCTGGAACTTGGAATCATGA

Protein sequence

>MsaT005685.1

MNNFIMQNFTERLRPLVGLNGWDYCVYWKLSEDQRYLEWLGCCCGGSESNQNGGEEHLFPVSSCRDTMFSHPRTNSCDLLSQLSTSIPIDSGIHAQALLTNQPNWLNYPNSLDPNTLHETINGTHVLIPVPGGLVELFVTKQVGEDQNVIDFITSQCIVMVDQEGMNHSIGFNSMSNMQSNPIVGDENDGNNTNNIFHSSETLNLPHDISVLNFMQQFNYSYNQQQNRIKNDETFSEEYQGSFLQDQENNNTLKSHTEEVHDNKSLMTDNNQYMFVDPLDTKKKQEHVVGRADSMSDCSDQNEEEDDGKYRRRSGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGTESNCVYVDGVQVQPNNNNNNVPKAEHGFHVGNGYVSKQKQEDVGTVTDKQTQQMEAQVEVAQIDGNEYFVKVFCEHRPGGFVKLMEALNTLGMDVMHATVTSHKGLVSNVFKVENYEQKKESEIVEAEEVRDSLLELTRNKSSCWNLES*