AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005763


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005763 MtrunA17_Chr1g0212151 92.373 354 20 1 1 354 1 347 0.0 661
MsaG005763 MtrunA17_Chr6g0457851 73.315 356 83 2 1 354 11 356 0.0 536
MsaG005763 MtrunA17_Chr6g0449861 61.667 360 119 6 1 354 9 355 1.32e-147 421
MsaG005763 MtrunA17_Chr6g0449851 57.307 349 108 4 1 349 1 308 2.62e-135 388
MsaG005763 MtrunA17_Chr4g0059631 41.935 155 87 1 1 155 1 152 5.62e-36 131
MsaG005763 MtrunA17_Chr1g0212471 32.973 185 123 1 1 185 1 184 3.39e-33 122
MsaG005763 MtrunA17_Chr4g0022641 37.126 167 102 1 1 167 1 164 7.64e-31 120
MsaG005763 MtrunA17_Chr2g0303981 38.365 159 93 2 3 160 5 159 2.26e-29 112
MsaG005763 MtrunA17_Chr5g0432691 34.454 119 70 4 1 118 1 112 1.10e-15 73.9
MsaG005763 MtrunA17_Chr3g0134451 33.945 109 64 3 1 109 1 101 2.55e-14 72.8
MsaG005763 MtrunA17_Chr3g0107381 23.478 230 153 8 1 216 1 221 1.19e-13 69.3
MsaG005763 MtrunA17_Chr4g0014321 35.897 117 60 4 1 116 1 103 1.54e-13 69.3
MsaG005763 MtrunA17_Chr8g0379021 30.625 160 84 5 2 144 12 161 3.21e-12 64.3
MsaG005763 MtrunA17_Chr3g0107351 32.759 116 69 4 3 116 2 110 5.58e-12 63.5
MsaG005763 MtrunA17_Chr3g0107341 34.188 117 66 5 3 116 2 110 1.26e-11 62.4
MsaG005763 MtrunA17_Chr2g0284911 28.025 157 98 4 1 154 16 160 1.61e-11 63.9
MsaG005763 MtrunA17_Chr3g0110131 25.100 251 139 8 1 216 1 237 2.05e-11 63.5
MsaG005763 MtrunA17_Chr2g0283941 31.481 108 66 4 2 108 3 103 2.37e-11 63.2
MsaG005763 MtrunA17_Chr1g0197321 29.464 112 66 4 1 105 1 106 3.53e-11 60.8
MsaG005763 MtrunA17_Chr3g0107331 30.909 110 69 3 3 111 2 105 3.67e-11 61.2
MsaG005763 MtrunA17_Chr3g0107361 29.375 160 99 6 3 154 2 155 3.96e-11 60.8
MsaG005763 MtrunA17_Chr8g0376821 35.802 81 40 1 1 69 1 81 5.15e-11 61.2
MsaG005763 MtrunA17_Chr8g0380021 28.289 152 100 3 1 152 17 159 7.56e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005763 AT5G55690.1 39.310 145 80 2 1 144 1 138 2.60e-25 103
MsaG005763 AT5G55690.2 39.310 145 80 2 1 144 1 138 2.60e-25 103
MsaG005763 AT5G58890.1 30.380 158 105 3 6 160 6 161 4.31e-18 84.0
MsaG005763 AT3G18650.1 34.815 135 74 5 16 144 31 157 5.21e-15 75.9
MsaG005763 AT5G23260.3 25.243 206 133 5 1 202 1 189 6.49e-13 68.2
MsaG005763 AT1G65330.1 33.333 111 67 4 3 112 2 106 6.53e-13 68.6
MsaG005763 AT1G65300.1 33.636 110 64 4 5 112 4 106 6.97e-13 68.6
MsaG005763 AT1G22590.2 29.677 155 98 3 1 150 1 149 8.54e-13 66.2
MsaG005763 AT3G05860.3 28.934 197 116 7 1 185 1 185 1.33e-12 67.4
MsaG005763 AT3G05860.2 38.462 78 40 3 1 77 1 71 1.43e-12 66.6
MsaG005763 AT3G05860.1 37.662 77 42 2 1 77 1 71 2.32e-12 67.0
MsaG005763 AT2G28700.1 27.647 170 103 6 1 164 1 156 3.11e-12 67.4
MsaG005763 AT5G23260.1 25.000 216 130 6 1 202 17 214 5.20e-12 65.9
MsaG005763 AT5G26650.1 33.333 111 63 4 5 112 3 105 6.45e-12 66.6
MsaG005763 AT5G23260.2 23.636 220 133 5 1 202 1 203 1.41e-11 64.3
MsaG005763 AT5G23260.4 23.636 220 133 5 1 202 17 219 2.53e-11 63.9
MsaG005763 AT2G40210.1 31.731 104 64 3 1 103 1 98 2.81e-11 64.7
MsaG005763 AT2G03060.3 23.864 176 119 5 1 173 1 164 3.43e-11 64.3
MsaG005763 AT2G03060.7 23.864 176 119 5 1 173 1 164 3.43e-11 64.3
MsaG005763 AT2G03060.1 23.864 176 119 5 1 173 1 164 3.43e-11 64.3
MsaG005763 AT5G27960.1 31.193 109 68 4 5 112 3 105 4.03e-11 63.9
MsaG005763 AT2G03060.2 23.864 176 119 5 1 173 1 164 4.76e-11 63.9
MsaG005763 AT5G13790.2 31.967 122 74 3 1 122 1 113 7.27e-11 62.4
MsaG005763 AT4G09960.5 27.215 158 98 5 1 154 11 155 9.42e-11 62.0

Find 81 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTTTCCATATTGATTT+TGG 0.055519 1:+84971798 None:intergenic
CAACATGGATTTCAACTTAA+TGG 0.148999 1:-84971658 MsaT005763.1:CDS
TTGTCCTTAGGCCATGTTTC+AGG 0.193367 1:+84972468 None:intergenic
TTGATGTTAATGGGGCTAAT+TGG 0.199081 1:-84971885 MsaT005763.1:CDS
TACAAGAATATTGATGTTAA+TGG 0.237026 1:-84971895 MsaT005763.1:CDS
AAATCCTCGACCTACAAAAT+TGG 0.237707 1:+84972497 None:intergenic
GCATTTCCATTGTAATAGTA+TGG 0.257144 1:+84971745 None:intergenic
ATGAAAACCCCTTAGGGTTT+TGG 0.259063 1:-84972023 MsaT005763.1:CDS
ACTTCCGTGATTTCTCCTTT+TGG 0.266267 1:+84972613 None:intergenic
ACAAGAATATTGATGTTAAT+GGG 0.303821 1:-84971894 MsaT005763.1:CDS
GGTTATCAGGACCGATGCTT+CGG 0.326389 1:-84971826 MsaT005763.1:CDS
GATATTATTTGCTAGCAAAC+TGG 0.357133 1:-84972247 MsaT005763.1:CDS
AATGAATCTTTCAATTCTCT+TGG 0.359377 1:-84972282 MsaT005763.1:CDS
GATTTGAGAGATTCTGAAAA+GGG 0.362382 1:+84971683 None:intergenic
GGGTCGTGGAAGAATATCTA+TGG 0.367126 1:-84972643 MsaT005763.1:CDS
TGATGTTAATGGGGCTAATT+GGG 0.367522 1:-84971884 MsaT005763.1:CDS
ATTAACATCAATATTCTTGT+AGG 0.368101 1:+84971897 None:intergenic
TGGGGCTAATTGGGCCAATC+AGG 0.372470 1:-84971875 MsaT005763.1:CDS
TCTTGAACATCATAGATCTT+AGG 0.373714 1:+84972390 None:intergenic
ATGGTGCGAGCTTTGTATAT+TGG 0.377737 1:+84971957 None:intergenic
CGGGCTTCCCAAAATCAATA+TGG 0.380849 1:-84971806 MsaT005763.1:CDS
ATCATTAGCATTAACCTGAT+TGG 0.383785 1:+84971861 None:intergenic
GTTATCAGGACCGATGCTTC+GGG 0.385864 1:-84971825 MsaT005763.1:CDS
TATGCTAAAAGAAGATCATA+AGG 0.417664 1:-84972190 MsaT005763.1:CDS
ATTAGTGATGAAAACCCCTT+AGG 0.421326 1:-84972030 MsaT005763.1:CDS
TCATCACTAATATTCATCAT+TGG 0.425152 1:+84972042 None:intergenic
AAGGAAGGATGGAGCTGAAA+AGG 0.426747 1:-84971782 MsaT005763.1:CDS
AACATCAACATCACAAAGAA+TGG 0.436469 1:+84972539 None:intergenic
ACTATAACACAACAAATGAT+AGG 0.448494 1:-84972416 MsaT005763.1:CDS
AGATTTGAGAGATTCTGAAA+AGG 0.451030 1:+84971682 None:intergenic
AATCCTCGACCTACAAAATT+GGG 0.455489 1:+84972498 None:intergenic
TTAACATCAATATTCTTGTA+GGG 0.460944 1:+84971898 None:intergenic
GGGAGAGTGTGCAAGGCAAT+AGG 0.469982 1:+84971703 None:intergenic
ATGCTAATGATACCTACAAT+GGG 0.473473 1:-84971849 MsaT005763.1:CDS
TAGTTTCTCTTTACGCACTT+TGG 0.478267 1:+84972326 None:intergenic
CAAGCTCATATGTTCATGAA+TGG 0.478657 1:-84971613 MsaT005763.1:CDS
ATCTATGGAACTCATCCAAA+AGG 0.478947 1:-84972628 MsaT005763.1:CDS
GAAGGTTGAGAGCTTTGTCC+CGG 0.483719 1:+84971991 None:intergenic
TTGAAAGATTCATTCCAAGT+TGG 0.490806 1:+84972291 None:intergenic
ATCAATATGGAAAGGAAGGA+TGG 0.505258 1:-84971793 MsaT005763.1:CDS
CAAAATCAATATGGAAAGGA+AGG 0.508161 1:-84971797 MsaT005763.1:CDS
TTAGTGATGAAAACCCCTTA+GGG 0.508185 1:-84972029 MsaT005763.1:CDS
GTCAACATTTCAAAAGAGAA+AGG 0.514992 1:-84972592 MsaT005763.1:CDS
TTGAAGTGGCCAAAACCCTA+AGG 0.517435 1:+84972014 None:intergenic
TCACTAATATTCATCATTGG+AGG 0.523765 1:+84972045 None:intergenic
CTTGGATTTGCGGTCAAGGA+AGG 0.534446 1:+84972117 None:intergenic
CTCATATGTTCATGAATGGA+AGG 0.537554 1:-84971609 MsaT005763.1:CDS
TCGTCACCATACTATTACAA+TGG 0.539170 1:-84971751 MsaT005763.1:CDS
TAAAGATGATGTATCCAACT+TGG 0.548629 1:-84972305 MsaT005763.1:CDS
GTAACTTGGATTTGCGGTCA+AGG 0.551618 1:+84972113 None:intergenic
ATGAGATTGAAGTAGTAACT+TGG 0.551706 1:+84972099 None:intergenic
ATCTTTCAATTCTCTTGGAG+CGG 0.552140 1:-84972277 MsaT005763.1:CDS
ACTTAATGGATTCAATGCTA+AGG 0.552446 1:-84971644 MsaT005763.1:CDS
GAAGTAGTAACTTGGATTTG+CGG 0.553040 1:+84972107 None:intergenic
ATATTGGAAATCAAAGAAGA+AGG 0.553651 1:+84971973 None:intergenic
ATGCTAAAAGAAGATCATAA+GGG 0.556585 1:-84972189 MsaT005763.1:CDS
ACATTTCAAAAGAGAAAGGA+AGG 0.560555 1:-84972588 MsaT005763.1:CDS
GAGCTTTGTCCCGGTTGAAG+TGG 0.560628 1:+84972000 None:intergenic
AATGCTAATGATACCTACAA+TGG 0.561788 1:-84971850 MsaT005763.1:CDS
TGAAGTGGCCAAAACCCTAA+GGG 0.571128 1:+84972015 None:intergenic
TATTCGTAGAAAATGGGTCG+TGG 0.573273 1:-84972657 None:intergenic
TTCCCAAAATCAATATGGAA+AGG 0.576621 1:-84971801 MsaT005763.1:CDS
CTCGCACCATGTGGAGTCTG+AGG 0.578924 1:-84971944 MsaT005763.1:CDS
CTGAAAAGGGAGAGTGTGCA+AGG 0.587535 1:+84971696 None:intergenic
CACCATGTGGAGTCTGAGGA+GGG 0.590680 1:-84971940 MsaT005763.1:CDS
TAACATCAATATTCTTGTAG+GGG 0.591713 1:+84971899 None:intergenic
TCATCCAAAAGGAGAAATCA+CGG 0.593512 1:-84972617 MsaT005763.1:CDS
ATATGTTTGTGCTTGAGACA+TGG 0.597890 1:+84972068 None:intergenic
CAAGAATATTGATGTTAATG+GGG 0.607609 1:-84971893 MsaT005763.1:CDS
TGAACCTGAAACATGGCCTA+AGG 0.608253 1:-84972472 MsaT005763.1:CDS
CTATTACAATGGAAATGCAA+TGG 0.613734 1:-84971740 MsaT005763.1:CDS
GCACCATGTGGAGTCTGAGG+AGG 0.614956 1:-84971941 MsaT005763.1:CDS
GATTTGCTGAACCTGAAACA+TGG 0.621087 1:-84972479 MsaT005763.1:CDS
TACCCTCCTCAGACTCCACA+TGG 0.630866 1:+84971938 None:intergenic
GAAGTGGCCAAAACCCTAAG+GGG 0.646061 1:+84972016 None:intergenic
AATCTCTCAAATCTACAACA+TGG 0.661149 1:-84971673 MsaT005763.1:CDS
TATACAAAGCTCGCACCATG+TGG 0.663687 1:-84971953 MsaT005763.1:CDS
GCTAATGATACCTACAATGG+GGG 0.667333 1:-84971847 MsaT005763.1:CDS
TGCTAATGATACCTACAATG+GGG 0.672222 1:-84971848 MsaT005763.1:CDS
ATGGCCTAAGGACAAAAGAG+AGG 0.693604 1:-84972460 MsaT005763.1:CDS
AATAGCTCATGAATCACACA+AGG 0.705760 1:-84972160 MsaT005763.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 84971603 84972667 84971603 ID=MsaG005763
Chr1 mRNA 84971603 84972667 84971603 ID=MsaT005763.1;Parent=MsaG005763
Chr1 exon 84971603 84972667 84971603 ID=MsaT005763.1.exon1;Parent=MsaT005763.1
Chr1 CDS 84971603 84972667 84971603 ID=cds.MsaT005763.1;Parent=MsaT005763.1
Gene Sequence

>MsaT005763.1

ATGGGTCGTGGAAGAATATCTATGGAACTCATCCAAAAGGAGAAATCACGGAAGTCAACATTTCAAAAGAGAAAGGAAGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGTAGGTCGAGGATTTGCTGAACCTGAAACATGGCCTAAGGACAAAAGAGAGGTGCATAGAATCCTTCAAAAGTACTATAACACAACAAATGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAGAAAACTTGAATTTGAGATTTCCAAAGTGCGTAAAGAGAAACTAAAGATGATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGCGGAACAACTGATATTATTTGCTAGCAAACTGGAAGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCTAAAAGAAGATCATAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATAAACTTATCAGTACTCCTTCCTTGACCGCAAATCCAAGTTACTACTTCAATCTCATGCAAAATTCCATGTCTCAAGCACAAACATATCCTCCAATGATGAATATTAGTGATGAAAACCCCTTAGGGTTTTGGCCACTTCAACCGGGACAAAGCTCTCAACCTTCTTCTTTGATTTCCAATATACAAAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATTTGTGCAGTCTTACCCCTACAAGAATATTGATGTTAATGGGGCTAATTGGGCCAATCAGGTTAATGCTAATGATACCTACAATGGGGGTTATCAGGACCGATGCTTCGGGCTTCCCAAAATCAATATGGAAAGGAAGGATGGAGCTGAAAAGGATGAAAACTCGTCACCATACTATTACAATGGAAATGCAATGGCAATGCAATCAAATCCTATTGCCTTGCACACTCTCCCTTTTCAGAATCTCTCAAATCTACAACATGGATTTCAACTTAATGGATTCAATGCTAAGGATATTCTGCAAGCTCATATGTTCATGAATGGAAGGAAGTAG

Protein sequence

>MsaT005763.1

MGRGRISMELIQKEKSRKSTFQKRKEGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPKDKREVHRILQKYYNTTNDRRPKIYDVQEYFKERMRKLEFEISKVRKEKLKMMYPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMLKEDHKGKTIAHESHKVDKLISTPSLTANPSYYFNLMQNSMSQAQTYPPMMNISDENPLGFWPLQPGQSSQPSSLISNIQSSHHVESEEGRFVQSYPYKNIDVNGANWANQVNANDTYNGGYQDRCFGLPKINMERKDGAEKDENSSPYYYNGNAMAMQSNPIALHTLPFQNLSNLQHGFQLNGFNAKDILQAHMFMNGRK*