AlfalfaGEDB | MsaG005763

M. sativa ssp. caerulea / MsaG005763

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005763	KEH44429.1	92.373	354	20	1	1	354	1	347	0.0	661

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005763	sp\|Q9FIM0\|AGL82_ARATH	30.380	158	105	3	6	160	6	161	4.24e-17	84.0

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005763	tr\|A0A072VR19\|A0A072VR19_MEDTR	92.373	354	20	1	1	354	1	347	0.0	661

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005763	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003769	MsaG005763	0.807699	7.562430e-50	1.221840e-47
MsaG003938	MsaG005763	0.820980	9.037443e-53	2.039952e-50
MsaG004004	MsaG005763	0.806430	1.399605e-49	2.194340e-47
MsaG005759	MsaG005763	0.952804	3.626485e-110	1.024099e-104
MsaG005763	MsaG010994	0.804625	3.334050e-49	5.010707e-47
MsaG005763	MsaG011749	0.804195	4.094095e-49	6.092108e-47
MsaG005763	MsaG014232	0.809992	2.458485e-50	4.197578e-48
MsaG005763	MsaG018920	0.804435	3.650227e-49	5.461880e-47
MsaG005763	MsaG020578	0.816542	9.099370e-52	1.829244e-49
MsaG005763	MsaG023817	0.802444	9.395793e-49	1.342777e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005763	MtrunA17_Chr1g0212151	92.373	354	20	1	1	354	1	347	0.0	661
MsaG005763	MtrunA17_Chr6g0457851	73.315	356	83	2	1	354	11	356	0.0	536
MsaG005763	MtrunA17_Chr6g0449861	61.667	360	119	6	1	354	9	355	1.32e-147	421
MsaG005763	MtrunA17_Chr6g0449851	57.307	349	108	4	1	349	1	308	2.62e-135	388
MsaG005763	MtrunA17_Chr4g0059631	41.935	155	87	1	1	155	1	152	5.62e-36	131
MsaG005763	MtrunA17_Chr1g0212471	32.973	185	123	1	1	185	1	184	3.39e-33	122
MsaG005763	MtrunA17_Chr4g0022641	37.126	167	102	1	1	167	1	164	7.64e-31	120
MsaG005763	MtrunA17_Chr2g0303981	38.365	159	93	2	3	160	5	159	2.26e-29	112
MsaG005763	MtrunA17_Chr5g0432691	34.454	119	70	4	1	118	1	112	1.10e-15	73.9
MsaG005763	MtrunA17_Chr3g0134451	33.945	109	64	3	1	109	1	101	2.55e-14	72.8

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005763	AT5G55690.1	39.310	145	80	2	1	144	1	138	2.60e-25	103
MsaG005763	AT5G55690.2	39.310	145	80	2	1	144	1	138	2.60e-25	103
MsaG005763	AT5G58890.1	30.380	158	105	3	6	160	6	161	4.31e-18	84.0
MsaG005763	AT3G18650.1	34.815	135	74	5	16	144	31	157	5.21e-15	75.9
MsaG005763	AT5G23260.3	25.243	206	133	5	1	202	1	189	6.49e-13	68.2
MsaG005763	AT1G65330.1	33.333	111	67	4	3	112	2	106	6.53e-13	68.6
MsaG005763	AT1G65300.1	33.636	110	64	4	5	112	4	106	6.97e-13	68.6
MsaG005763	AT1G22590.2	29.677	155	98	3	1	150	1	149	8.54e-13	66.2
MsaG005763	AT3G05860.3	28.934	197	116	7	1	185	1	185	1.33e-12	67.4
MsaG005763	AT3G05860.2	38.462	78	40	3	1	77	1	71	1.43e-12	66.6

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Find 81 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTCGACCTACAAAAT+TGG	0.237707	1:+84972497	None:intergenic
AACATCAACATCACAAAGAA+TGG	0.436469	1:+84972539	None:intergenic
AAGGAAGGATGGAGCTGAAA+AGG	0.426747	1:-84971782	MsaT005763.1:CDS
AATAGCTCATGAATCACACA+AGG	0.705760	1:-84972160	MsaT005763.1:CDS
AATCCTCGACCTACAAAATT+GGG	0.455489	1:+84972498	None:intergenic
AATCTCTCAAATCTACAACA+TGG	0.661149	1:-84971673	MsaT005763.1:CDS
AATGAATCTTTCAATTCTCT+TGG	0.359377	1:-84972282	MsaT005763.1:CDS
AATGCTAATGATACCTACAA+TGG	0.561788	1:-84971850	MsaT005763.1:CDS
ACAAGAATATTGATGTTAAT+GGG	0.303821	1:-84971894	MsaT005763.1:CDS
ACATTTCAAAAGAGAAAGGA+AGG	0.560555	1:-84972588	MsaT005763.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	84971603	84972667	84971603	ID=MsaG005763
Chr1	mRNA	84971603	84972667	84971603	ID=MsaT005763.1;Parent=MsaG005763
Chr1	exon	84971603	84972667	84971603	ID=MsaT005763.1.exon1;Parent=MsaT005763.1
Chr1	CDS	84971603	84972667	84971603	ID=cds.MsaT005763.1;Parent=MsaT005763.1

Gene Sequence

>MsaT005763.1

ATGGGTCGTGGAAGAATATCTATGGAACTCATCCAAAAGGAGAAATCACGGAAGTCAACATTTCAAAAGAGAAAGGAAGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGTAGGTCGAGGATTTGCTGAACCTGAAACATGGCCTAAGGACAAAAGAGAGGTGCATAGAATCCTTCAAAAGTACTATAACACAACAAATGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAGAAAACTTGAATTTGAGATTTCCAAAGTGCGTAAAGAGAAACTAAAGATGATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGCGGAACAACTGATATTATTTGCTAGCAAACTGGAAGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCTAAAAGAAGATCATAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATAAACTTATCAGTACTCCTTCCTTGACCGCAAATCCAAGTTACTACTTCAATCTCATGCAAAATTCCATGTCTCAAGCACAAACATATCCTCCAATGATGAATATTAGTGATGAAAACCCCTTAGGGTTTTGGCCACTTCAACCGGGACAAAGCTCTCAACCTTCTTCTTTGATTTCCAATATACAAAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATTTGTGCAGTCTTACCCCTACAAGAATATTGATGTTAATGGGGCTAATTGGGCCAATCAGGTTAATGCTAATGATACCTACAATGGGGGTTATCAGGACCGATGCTTCGGGCTTCCCAAAATCAATATGGAAAGGAAGGATGGAGCTGAAAAGGATGAAAACTCGTCACCATACTATTACAATGGAAATGCAATGGCAATGCAATCAAATCCTATTGCCTTGCACACTCTCCCTTTTCAGAATCTCTCAAATCTACAACATGGATTTCAACTTAATGGATTCAATGCTAAGGATATTCTGCAAGCTCATATGTTCATGAATGGAAGGAAGTAG

Protein sequence

>MsaT005763.1

MGRGRISMELIQKEKSRKSTFQKRKEGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPKDKREVHRILQKYYNTTNDRRPKIYDVQEYFKERMRKLEFEISKVRKEKLKMMYPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMLKEDHKGKTIAHESHKVDKLISTPSLTANPSYYFNLMQNSMSQAQTYPPMMNISDENPLGFWPLQPGQSSQPSSLISNIQSSHHVESEEGRFVQSYPYKNIDVNGANWANQVNANDTYNGGYQDRCFGLPKINMERKDGAEKDENSSPYYYNGNAMAMQSNPIALHTLPFQNLSNLQHGFQLNGFNAKDILQAHMFMNGRK*