Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005763 | KEH44429.1 | 92.373 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 0.0 | 661 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005763 | sp|Q9FIM0|AGL82_ARATH | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 4.24e-17 | 84.0 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005763 | tr|A0A072VR19|A0A072VR19_MEDTR | 92.373 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 0.0 | 661 |
Gene ID | Type | Classification |
---|---|---|
MsaG005763 | TF | MADS-M-type |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG003769 | MsaG005763 | 0.807699 | 7.562430e-50 | 1.221840e-47 |
MsaG004004 | MsaG005763 | 0.806430 | 1.399605e-49 | 2.194340e-47 |
MsaG003938 | MsaG005763 | 0.820980 | 9.037443e-53 | 2.039952e-50 |
MsaG005759 | MsaG005763 | 0.952804 | 3.626485e-110 | 1.024099e-104 |
MsaG005763 | MsaG010994 | 0.804625 | 3.334050e-49 | 5.010707e-47 |
MsaG005763 | MsaG011749 | 0.804195 | 4.094095e-49 | 6.092108e-47 |
MsaG005763 | MsaG014232 | 0.809992 | 2.458485e-50 | 4.197578e-48 |
MsaG005763 | MsaG018920 | 0.804435 | 3.650227e-49 | 5.461880e-47 |
MsaG005763 | MsaG020578 | 0.816542 | 9.099370e-52 | 1.829244e-49 |
MsaG005763 | MsaG023817 | 0.802444 | 9.395793e-49 | 1.342777e-46 |
MsaG005763 | MsaG024652 | 0.806940 | 1.093712e-49 | 1.735355e-47 |
MsaG005763 | MsaG029236 | 0.802902 | 7.568323e-49 | 1.092973e-46 |
MsaG005763 | MsaG033702 | 0.806116 | 1.628654e-49 | 2.534418e-47 |
MsaG005763 | MsaG036131 | 0.803408 | 5.952533e-49 | 8.697458e-47 |
MsaG005763 | MsaG041015 | 0.831215 | 3.415282e-55 | 1.023393e-52 |
MsaG005763 | MsaG041017 | 0.800668 | 2.164994e-48 | 2.971758e-46 |
MsaG005763 | MsaG041044 | 0.821439 | 7.091311e-53 | 1.620157e-50 |
MsaG005763 | MsaG041230 | 0.811902 | 9.526676e-51 | 1.704398e-48 |
MsaG005763 | MsaG046526 | 0.810134 | 2.291764e-50 | 3.926453e-48 |
MsaG005763 | MsaG019026 | 0.835636 | 2.729011e-56 | 9.316655e-54 |
MsaG005763 | MsaG032143 | 0.807757 | 7.353314e-50 | 1.189685e-47 |
MsaG005763 | MsaG031245 | 0.805226 | 2.499727e-49 | 3.809666e-47 |
MsaG005763 | MsaG030261 | 0.828643 | 1.436582e-54 | 4.000052e-52 |
MsaG005763 | MsaG037000 | 0.803681 | 5.228880e-49 | 7.688524e-47 |
MsaG005763 | MsaG037532 | 0.818088 | 4.099635e-52 | 8.576328e-50 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005763 | MtrunA17_Chr1g0212151 | 92.373 | 354 | 20 | 1 | 1 | 354 | 1 | 347 | 0.0 | 661 |
MsaG005763 | MtrunA17_Chr6g0457851 | 73.315 | 356 | 83 | 2 | 1 | 354 | 11 | 356 | 0.0 | 536 |
MsaG005763 | MtrunA17_Chr6g0449861 | 61.667 | 360 | 119 | 6 | 1 | 354 | 9 | 355 | 1.32e-147 | 421 |
MsaG005763 | MtrunA17_Chr6g0449851 | 57.307 | 349 | 108 | 4 | 1 | 349 | 1 | 308 | 2.62e-135 | 388 |
MsaG005763 | MtrunA17_Chr4g0059631 | 41.935 | 155 | 87 | 1 | 1 | 155 | 1 | 152 | 5.62e-36 | 131 |
MsaG005763 | MtrunA17_Chr1g0212471 | 32.973 | 185 | 123 | 1 | 1 | 185 | 1 | 184 | 3.39e-33 | 122 |
MsaG005763 | MtrunA17_Chr4g0022641 | 37.126 | 167 | 102 | 1 | 1 | 167 | 1 | 164 | 7.64e-31 | 120 |
MsaG005763 | MtrunA17_Chr2g0303981 | 38.365 | 159 | 93 | 2 | 3 | 160 | 5 | 159 | 2.26e-29 | 112 |
MsaG005763 | MtrunA17_Chr5g0432691 | 34.454 | 119 | 70 | 4 | 1 | 118 | 1 | 112 | 1.10e-15 | 73.9 |
MsaG005763 | MtrunA17_Chr3g0134451 | 33.945 | 109 | 64 | 3 | 1 | 109 | 1 | 101 | 2.55e-14 | 72.8 |
MsaG005763 | MtrunA17_Chr3g0107381 | 23.478 | 230 | 153 | 8 | 1 | 216 | 1 | 221 | 1.19e-13 | 69.3 |
MsaG005763 | MtrunA17_Chr4g0014321 | 35.897 | 117 | 60 | 4 | 1 | 116 | 1 | 103 | 1.54e-13 | 69.3 |
MsaG005763 | MtrunA17_Chr8g0379021 | 30.625 | 160 | 84 | 5 | 2 | 144 | 12 | 161 | 3.21e-12 | 64.3 |
MsaG005763 | MtrunA17_Chr3g0107351 | 32.759 | 116 | 69 | 4 | 3 | 116 | 2 | 110 | 5.58e-12 | 63.5 |
MsaG005763 | MtrunA17_Chr3g0107341 | 34.188 | 117 | 66 | 5 | 3 | 116 | 2 | 110 | 1.26e-11 | 62.4 |
MsaG005763 | MtrunA17_Chr2g0284911 | 28.025 | 157 | 98 | 4 | 1 | 154 | 16 | 160 | 1.61e-11 | 63.9 |
MsaG005763 | MtrunA17_Chr3g0110131 | 25.100 | 251 | 139 | 8 | 1 | 216 | 1 | 237 | 2.05e-11 | 63.5 |
MsaG005763 | MtrunA17_Chr2g0283941 | 31.481 | 108 | 66 | 4 | 2 | 108 | 3 | 103 | 2.37e-11 | 63.2 |
MsaG005763 | MtrunA17_Chr1g0197321 | 29.464 | 112 | 66 | 4 | 1 | 105 | 1 | 106 | 3.53e-11 | 60.8 |
MsaG005763 | MtrunA17_Chr3g0107331 | 30.909 | 110 | 69 | 3 | 3 | 111 | 2 | 105 | 3.67e-11 | 61.2 |
MsaG005763 | MtrunA17_Chr3g0107361 | 29.375 | 160 | 99 | 6 | 3 | 154 | 2 | 155 | 3.96e-11 | 60.8 |
MsaG005763 | MtrunA17_Chr8g0376821 | 35.802 | 81 | 40 | 1 | 1 | 69 | 1 | 81 | 5.15e-11 | 61.2 |
MsaG005763 | MtrunA17_Chr8g0380021 | 28.289 | 152 | 100 | 3 | 1 | 152 | 17 | 159 | 7.56e-11 | 61.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005763 | AT5G55690.1 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.60e-25 | 103 |
MsaG005763 | AT5G55690.2 | 39.310 | 145 | 80 | 2 | 1 | 144 | 1 | 138 | 2.60e-25 | 103 |
MsaG005763 | AT5G58890.1 | 30.380 | 158 | 105 | 3 | 6 | 160 | 6 | 161 | 4.31e-18 | 84.0 |
MsaG005763 | AT3G18650.1 | 34.815 | 135 | 74 | 5 | 16 | 144 | 31 | 157 | 5.21e-15 | 75.9 |
MsaG005763 | AT5G23260.3 | 25.243 | 206 | 133 | 5 | 1 | 202 | 1 | 189 | 6.49e-13 | 68.2 |
MsaG005763 | AT1G65330.1 | 33.333 | 111 | 67 | 4 | 3 | 112 | 2 | 106 | 6.53e-13 | 68.6 |
MsaG005763 | AT1G65300.1 | 33.636 | 110 | 64 | 4 | 5 | 112 | 4 | 106 | 6.97e-13 | 68.6 |
MsaG005763 | AT1G22590.2 | 29.677 | 155 | 98 | 3 | 1 | 150 | 1 | 149 | 8.54e-13 | 66.2 |
MsaG005763 | AT3G05860.3 | 28.934 | 197 | 116 | 7 | 1 | 185 | 1 | 185 | 1.33e-12 | 67.4 |
MsaG005763 | AT3G05860.2 | 38.462 | 78 | 40 | 3 | 1 | 77 | 1 | 71 | 1.43e-12 | 66.6 |
MsaG005763 | AT3G05860.1 | 37.662 | 77 | 42 | 2 | 1 | 77 | 1 | 71 | 2.32e-12 | 67.0 |
MsaG005763 | AT2G28700.1 | 27.647 | 170 | 103 | 6 | 1 | 164 | 1 | 156 | 3.11e-12 | 67.4 |
MsaG005763 | AT5G23260.1 | 25.000 | 216 | 130 | 6 | 1 | 202 | 17 | 214 | 5.20e-12 | 65.9 |
MsaG005763 | AT5G26650.1 | 33.333 | 111 | 63 | 4 | 5 | 112 | 3 | 105 | 6.45e-12 | 66.6 |
MsaG005763 | AT5G23260.2 | 23.636 | 220 | 133 | 5 | 1 | 202 | 1 | 203 | 1.41e-11 | 64.3 |
MsaG005763 | AT5G23260.4 | 23.636 | 220 | 133 | 5 | 1 | 202 | 17 | 219 | 2.53e-11 | 63.9 |
MsaG005763 | AT2G40210.1 | 31.731 | 104 | 64 | 3 | 1 | 103 | 1 | 98 | 2.81e-11 | 64.7 |
MsaG005763 | AT2G03060.3 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.43e-11 | 64.3 |
MsaG005763 | AT2G03060.7 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.43e-11 | 64.3 |
MsaG005763 | AT2G03060.1 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 3.43e-11 | 64.3 |
MsaG005763 | AT5G27960.1 | 31.193 | 109 | 68 | 4 | 5 | 112 | 3 | 105 | 4.03e-11 | 63.9 |
MsaG005763 | AT2G03060.2 | 23.864 | 176 | 119 | 5 | 1 | 173 | 1 | 164 | 4.76e-11 | 63.9 |
MsaG005763 | AT5G13790.2 | 31.967 | 122 | 74 | 3 | 1 | 122 | 1 | 113 | 7.27e-11 | 62.4 |
MsaG005763 | AT4G09960.5 | 27.215 | 158 | 98 | 5 | 1 | 154 | 11 | 155 | 9.42e-11 | 62.0 |
Find 81 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCCTTTCCATATTGATTT+TGG | 0.055519 | 1:+84971798 | None:intergenic |
CAACATGGATTTCAACTTAA+TGG | 0.148999 | 1:-84971658 | MsaT005763.1:CDS |
TTGTCCTTAGGCCATGTTTC+AGG | 0.193367 | 1:+84972468 | None:intergenic |
TTGATGTTAATGGGGCTAAT+TGG | 0.199081 | 1:-84971885 | MsaT005763.1:CDS |
TACAAGAATATTGATGTTAA+TGG | 0.237026 | 1:-84971895 | MsaT005763.1:CDS |
AAATCCTCGACCTACAAAAT+TGG | 0.237707 | 1:+84972497 | None:intergenic |
GCATTTCCATTGTAATAGTA+TGG | 0.257144 | 1:+84971745 | None:intergenic |
ATGAAAACCCCTTAGGGTTT+TGG | 0.259063 | 1:-84972023 | MsaT005763.1:CDS |
ACTTCCGTGATTTCTCCTTT+TGG | 0.266267 | 1:+84972613 | None:intergenic |
ACAAGAATATTGATGTTAAT+GGG | 0.303821 | 1:-84971894 | MsaT005763.1:CDS |
GGTTATCAGGACCGATGCTT+CGG | 0.326389 | 1:-84971826 | MsaT005763.1:CDS |
GATATTATTTGCTAGCAAAC+TGG | 0.357133 | 1:-84972247 | MsaT005763.1:CDS |
AATGAATCTTTCAATTCTCT+TGG | 0.359377 | 1:-84972282 | MsaT005763.1:CDS |
GATTTGAGAGATTCTGAAAA+GGG | 0.362382 | 1:+84971683 | None:intergenic |
GGGTCGTGGAAGAATATCTA+TGG | 0.367126 | 1:-84972643 | MsaT005763.1:CDS |
TGATGTTAATGGGGCTAATT+GGG | 0.367522 | 1:-84971884 | MsaT005763.1:CDS |
ATTAACATCAATATTCTTGT+AGG | 0.368101 | 1:+84971897 | None:intergenic |
TGGGGCTAATTGGGCCAATC+AGG | 0.372470 | 1:-84971875 | MsaT005763.1:CDS |
TCTTGAACATCATAGATCTT+AGG | 0.373714 | 1:+84972390 | None:intergenic |
ATGGTGCGAGCTTTGTATAT+TGG | 0.377737 | 1:+84971957 | None:intergenic |
CGGGCTTCCCAAAATCAATA+TGG | 0.380849 | 1:-84971806 | MsaT005763.1:CDS |
ATCATTAGCATTAACCTGAT+TGG | 0.383785 | 1:+84971861 | None:intergenic |
GTTATCAGGACCGATGCTTC+GGG | 0.385864 | 1:-84971825 | MsaT005763.1:CDS |
TATGCTAAAAGAAGATCATA+AGG | 0.417664 | 1:-84972190 | MsaT005763.1:CDS |
ATTAGTGATGAAAACCCCTT+AGG | 0.421326 | 1:-84972030 | MsaT005763.1:CDS |
TCATCACTAATATTCATCAT+TGG | 0.425152 | 1:+84972042 | None:intergenic |
AAGGAAGGATGGAGCTGAAA+AGG | 0.426747 | 1:-84971782 | MsaT005763.1:CDS |
AACATCAACATCACAAAGAA+TGG | 0.436469 | 1:+84972539 | None:intergenic |
ACTATAACACAACAAATGAT+AGG | 0.448494 | 1:-84972416 | MsaT005763.1:CDS |
AGATTTGAGAGATTCTGAAA+AGG | 0.451030 | 1:+84971682 | None:intergenic |
AATCCTCGACCTACAAAATT+GGG | 0.455489 | 1:+84972498 | None:intergenic |
TTAACATCAATATTCTTGTA+GGG | 0.460944 | 1:+84971898 | None:intergenic |
GGGAGAGTGTGCAAGGCAAT+AGG | 0.469982 | 1:+84971703 | None:intergenic |
ATGCTAATGATACCTACAAT+GGG | 0.473473 | 1:-84971849 | MsaT005763.1:CDS |
TAGTTTCTCTTTACGCACTT+TGG | 0.478267 | 1:+84972326 | None:intergenic |
CAAGCTCATATGTTCATGAA+TGG | 0.478657 | 1:-84971613 | MsaT005763.1:CDS |
ATCTATGGAACTCATCCAAA+AGG | 0.478947 | 1:-84972628 | MsaT005763.1:CDS |
GAAGGTTGAGAGCTTTGTCC+CGG | 0.483719 | 1:+84971991 | None:intergenic |
TTGAAAGATTCATTCCAAGT+TGG | 0.490806 | 1:+84972291 | None:intergenic |
ATCAATATGGAAAGGAAGGA+TGG | 0.505258 | 1:-84971793 | MsaT005763.1:CDS |
CAAAATCAATATGGAAAGGA+AGG | 0.508161 | 1:-84971797 | MsaT005763.1:CDS |
TTAGTGATGAAAACCCCTTA+GGG | 0.508185 | 1:-84972029 | MsaT005763.1:CDS |
GTCAACATTTCAAAAGAGAA+AGG | 0.514992 | 1:-84972592 | MsaT005763.1:CDS |
TTGAAGTGGCCAAAACCCTA+AGG | 0.517435 | 1:+84972014 | None:intergenic |
TCACTAATATTCATCATTGG+AGG | 0.523765 | 1:+84972045 | None:intergenic |
CTTGGATTTGCGGTCAAGGA+AGG | 0.534446 | 1:+84972117 | None:intergenic |
CTCATATGTTCATGAATGGA+AGG | 0.537554 | 1:-84971609 | MsaT005763.1:CDS |
TCGTCACCATACTATTACAA+TGG | 0.539170 | 1:-84971751 | MsaT005763.1:CDS |
TAAAGATGATGTATCCAACT+TGG | 0.548629 | 1:-84972305 | MsaT005763.1:CDS |
GTAACTTGGATTTGCGGTCA+AGG | 0.551618 | 1:+84972113 | None:intergenic |
ATGAGATTGAAGTAGTAACT+TGG | 0.551706 | 1:+84972099 | None:intergenic |
ATCTTTCAATTCTCTTGGAG+CGG | 0.552140 | 1:-84972277 | MsaT005763.1:CDS |
ACTTAATGGATTCAATGCTA+AGG | 0.552446 | 1:-84971644 | MsaT005763.1:CDS |
GAAGTAGTAACTTGGATTTG+CGG | 0.553040 | 1:+84972107 | None:intergenic |
ATATTGGAAATCAAAGAAGA+AGG | 0.553651 | 1:+84971973 | None:intergenic |
ATGCTAAAAGAAGATCATAA+GGG | 0.556585 | 1:-84972189 | MsaT005763.1:CDS |
ACATTTCAAAAGAGAAAGGA+AGG | 0.560555 | 1:-84972588 | MsaT005763.1:CDS |
GAGCTTTGTCCCGGTTGAAG+TGG | 0.560628 | 1:+84972000 | None:intergenic |
AATGCTAATGATACCTACAA+TGG | 0.561788 | 1:-84971850 | MsaT005763.1:CDS |
TGAAGTGGCCAAAACCCTAA+GGG | 0.571128 | 1:+84972015 | None:intergenic |
TATTCGTAGAAAATGGGTCG+TGG | 0.573273 | 1:-84972657 | None:intergenic |
TTCCCAAAATCAATATGGAA+AGG | 0.576621 | 1:-84971801 | MsaT005763.1:CDS |
CTCGCACCATGTGGAGTCTG+AGG | 0.578924 | 1:-84971944 | MsaT005763.1:CDS |
CTGAAAAGGGAGAGTGTGCA+AGG | 0.587535 | 1:+84971696 | None:intergenic |
CACCATGTGGAGTCTGAGGA+GGG | 0.590680 | 1:-84971940 | MsaT005763.1:CDS |
TAACATCAATATTCTTGTAG+GGG | 0.591713 | 1:+84971899 | None:intergenic |
TCATCCAAAAGGAGAAATCA+CGG | 0.593512 | 1:-84972617 | MsaT005763.1:CDS |
ATATGTTTGTGCTTGAGACA+TGG | 0.597890 | 1:+84972068 | None:intergenic |
CAAGAATATTGATGTTAATG+GGG | 0.607609 | 1:-84971893 | MsaT005763.1:CDS |
TGAACCTGAAACATGGCCTA+AGG | 0.608253 | 1:-84972472 | MsaT005763.1:CDS |
CTATTACAATGGAAATGCAA+TGG | 0.613734 | 1:-84971740 | MsaT005763.1:CDS |
GCACCATGTGGAGTCTGAGG+AGG | 0.614956 | 1:-84971941 | MsaT005763.1:CDS |
GATTTGCTGAACCTGAAACA+TGG | 0.621087 | 1:-84972479 | MsaT005763.1:CDS |
TACCCTCCTCAGACTCCACA+TGG | 0.630866 | 1:+84971938 | None:intergenic |
GAAGTGGCCAAAACCCTAAG+GGG | 0.646061 | 1:+84972016 | None:intergenic |
AATCTCTCAAATCTACAACA+TGG | 0.661149 | 1:-84971673 | MsaT005763.1:CDS |
TATACAAAGCTCGCACCATG+TGG | 0.663687 | 1:-84971953 | MsaT005763.1:CDS |
GCTAATGATACCTACAATGG+GGG | 0.667333 | 1:-84971847 | MsaT005763.1:CDS |
TGCTAATGATACCTACAATG+GGG | 0.672222 | 1:-84971848 | MsaT005763.1:CDS |
ATGGCCTAAGGACAAAAGAG+AGG | 0.693604 | 1:-84972460 | MsaT005763.1:CDS |
AATAGCTCATGAATCACACA+AGG | 0.705760 | 1:-84972160 | MsaT005763.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 84971603 | 84972667 | 84971603 | ID=MsaG005763 |
Chr1 | mRNA | 84971603 | 84972667 | 84971603 | ID=MsaT005763.1;Parent=MsaG005763 |
Chr1 | exon | 84971603 | 84972667 | 84971603 | ID=MsaT005763.1.exon1;Parent=MsaT005763.1 |
Chr1 | CDS | 84971603 | 84972667 | 84971603 | ID=cds.MsaT005763.1;Parent=MsaT005763.1 |
Gene Sequence |
Protein sequence |