AlfalfaGEDB | MsaG005798

M. sativa ssp. caerulea / MsaG005798

KEGG: K16221
GO: GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043433 GO:0044092 GO:0044424 GO:0044464 GO:0048519 GO:0050789 GO:0050794 GO:0051090 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03634.16

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005798	XP_003592726.1	97.692	260	2	2	1	259	1	257	0.0	508

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005798	sp\|Q9FMX2\|TCP7_ARATH	64.961	254	56	9	12	257	20	248	2.53e-95	283

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005798	tr\|G7IE92\|G7IE92_MEDTR	97.692	260	2	2	1	259	1	257	0.0	508

TFs/TRs:

Gene ID	Type	Classification
MsaG005798	TF	TCP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG005798	MsaG019943	0.832338	1.810100e-55	5.604513e-53
MsaG005798	MsaG019982	0.807816	7.146797e-50	1.157905e-47
MsaG005798	MsaG027568	0.804453	3.618589e-49	5.416763e-47
MsaG005798	MsaG029519	0.833610	8.766559e-56	2.817492e-53
MsaG005798	MsaG045409	0.836348	1.804016e-56	6.292365e-54

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005798	MtrunA17_Chr1g0211941	97.692	260	2	2	1	259	1	257	0.0	508
MsaG005798	MtrunA17_Chr1g0164881	61.111	252	53	7	17	257	16	233	1.83e-79	239
MsaG005798	MtrunA17_Chr5g0416581	65.217	115	29	3	7	114	39	149	2.59e-42	148
MsaG005798	MtrunA17_Chr2g0277361	74.737	95	21	1	26	117	121	215	3.67e-41	146
MsaG005798	MtrunA17_Chr7g0224581	65.000	100	28	2	19	118	37	129	3.15e-37	132
MsaG005798	MtrunA17_Chr4g0060601	75.309	81	15	1	26	101	86	166	2.19e-36	134
MsaG005798	MtrunA17_Chr1g0180911	73.418	79	17	2	19	94	34	111	8.32e-35	124
MsaG005798	MtrunA17_Chr1g0204001	62.626	99	31	2	10	106	40	134	1.19e-32	122
MsaG005798	MtrunA17_Chr8g0350941	70.130	77	23	0	28	104	76	152	1.29e-31	119

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005798	AT5G23280.1	64.961	254	56	9	12	257	20	248	2.57e-96	283
MsaG005798	AT5G08330.1	55.351	271	75	8	1	259	1	237	5.69e-77	233
MsaG005798	AT1G58100.1	77.907	86	19	0	33	118	61	146	7.17e-41	145
MsaG005798	AT1G35560.1	74.444	90	23	0	29	118	52	141	2.82e-39	139
MsaG005798	AT1G72010.1	78.571	84	17	1	26	109	58	140	2.87e-39	140
MsaG005798	AT3G47620.1	76.829	82	14	1	25	101	105	186	1.88e-37	137
MsaG005798	AT1G69690.1	75.949	79	14	1	28	101	43	121	8.59e-37	132
MsaG005798	AT3G27010.2	75.342	73	18	0	21	93	67	139	2.21e-33	123
MsaG005798	AT3G27010.1	75.342	73	18	0	21	93	67	139	2.21e-33	123
MsaG005798	AT5G51910.1	65.517	87	30	0	18	104	43	129	6.16e-33	122
MsaG005798	AT5G51910.2	65.517	87	30	0	18	104	43	129	6.16e-33	122
MsaG005798	AT2G45680.1	62.366	93	28	1	27	119	70	155	5.00e-32	120
MsaG005798	AT5G41030.1	66.176	68	23	0	28	95	64	131	8.73e-28	107
MsaG005798	AT2G37000.1	76.271	59	14	0	33	91	44	102	7.62e-27	103
MsaG005798	AT3G45150.1	42.742	124	47	4	21	122	8	129	7.85e-21	86.7
MsaG005798	AT1G58100.2	54.651	86	15	1	33	118	61	122	1.58e-19	87.0

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTCAACACCGGCGGCTCTT+TGG	0.201653	1:+85324018	MsaT005798.1:CDS
AGGAGAAGGGAGAGAGTTAT+TGG	0.218287	1:-85323868	None:intergenic
TTACCTGCACGGCCTGATTT+TGG	0.227364	1:+85324044	MsaT005798.1:CDS
TTCAACACCGGCGGCTCTTT+GGG	0.244327	1:+85324019	MsaT005798.1:CDS
CGGCTAGTTGTTGACGGTTT+GGG	0.317306	1:-85323608	None:intergenic
TCTCCTACGCCGTTCATTCT+CGG	0.325836	1:+85323924	MsaT005798.1:CDS
AATTTGCTTGCTTCGTTGTC+TGG	0.328042	1:+85324266	MsaT005798.1:CDS
TTCCAGCTCACACGCGAATT+AGG	0.343017	1:+85323720	MsaT005798.1:CDS
AGCTTTGCTGCTGCTGCCGC+CGG	0.352446	1:+85324077	MsaT005798.1:CDS
ACGGCTAGTTGTTGACGGTT+TGG	0.367652	1:-85323609	None:intergenic
TCTCTCTCCGTTTCACTTCG+TGG	0.367948	1:+85323843	MsaT005798.1:CDS
TCTGGTGGACATGGAAATTC+TGG	0.390225	1:+85324284	MsaT005798.1:CDS
TGCTCCTCCGCCGGAAATGA+TGG	0.394211	1:+85324100	MsaT005798.1:CDS
GTTGTTGTTGTGGTTCCGTC+GGG	0.397707	1:-85323561	None:intergenic
ACAACAGCATCAACAAGTTA+TGG	0.406472	1:+85324196	MsaT005798.1:CDS
GGTACCGGTGGCGGCGATGA+TGG	0.418821	1:-85323796	None:intergenic
AAAGACTGAACCATCATTTC+CGG	0.426674	1:-85324110	None:intergenic
GAGAGAGAAGAGAAACTTGC+CGG	0.430775	1:-85323828	None:intergenic
ACACGTGCGGCGCATATGAT+TGG	0.431664	1:-85323696	None:intergenic
GTGAAGTGGAGGAAGGAGAA+GGG	0.432577	1:-85323881	None:intergenic
CTCCAAATTTGACCAAAATC+AGG	0.435338	1:-85324056	None:intergenic
CTCTTTGGGCTTTACCTGCA+CGG	0.438680	1:+85324033	MsaT005798.1:CDS
TGCCGCCGGTGCTCCTCCGC+CGG	0.444737	1:+85324091	MsaT005798.1:CDS
AAAGATGATGCTCTTTCTGT+TGG	0.447514	1:+85323990	MsaT005798.1:CDS
CAACAGCATCAACAAGTTAT+GGG	0.456904	1:+85324197	MsaT005798.1:CDS
TGCCGGAGTTGTGCCGGTAC+CGG	0.460326	1:-85323811	None:intergenic
AGTGAAGTGGAGGAAGGAGA+AGG	0.462868	1:-85323882	None:intergenic
ATCATCGCCGCCACCGGTAC+CGG	0.463092	1:+85323798	MsaT005798.1:CDS
TTTGTCTCAGCAGCAACATC+AGG	0.466168	1:+85324130	MsaT005798.1:CDS
ATATGATTGGCATACGAATA+CGG	0.468808	1:-85323683	None:intergenic
AGAGTTGGGAATTATCTTCC+TGG	0.477725	1:+85324236	MsaT005798.1:CDS
AGTTGTGCCGGTACCGGTGG+CGG	0.478006	1:-85323805	None:intergenic
GGTTGTTGTTGTGGTTCCGT+CGG	0.488997	1:-85323562	None:intergenic
CACAGTAAAGTCGACGGCCG+TGG	0.489495	1:+85323657	MsaT005798.1:CDS
ACCGGTGGCGGCGATGATGG+AGG	0.492286	1:-85323793	None:intergenic
TGGTCGAGTGAAGTGGAGGA+AGG	0.494112	1:-85323888	None:intergenic
GACCTAATTCGCGTGTGAGC+TGG	0.494851	1:-85323722	None:intergenic
GTTCGTGGTGGTTGTTGTTG+TGG	0.498533	1:-85323571	None:intergenic
CATTTCCGGCGGAGGAGCAC+CGG	0.501079	1:-85324096	None:intergenic
GCTTCGTTGTCTGGTGGACA+TGG	0.503221	1:+85324275	MsaT005798.1:CDS
CCCTCCATCATCGCCGCCAC+CGG	0.503587	1:+85323792	MsaT005798.1:CDS
GAAGCTTCAGCTGCTAGAGT+TGG	0.504823	1:+85324221	MsaT005798.1:CDS
AAGCTTCAGCTGCTAGAGTT+GGG	0.504829	1:+85324222	MsaT005798.1:CDS
TGATGGAGGGTTCAGCTTGA+CGG	0.505105	1:-85323779	None:intergenic
TGACCAAAATCAGGCCGTGC+AGG	0.513660	1:-85324047	None:intergenic
CACCGGTACCGGCACAACTC+CGG	0.514457	1:+85323809	MsaT005798.1:CDS
TAGGAGAGAGAAGCGGTTTG+TGG	0.517147	1:-85323908	None:intergenic
TTGCTTGCTTCGTTGTCTGG+TGG	0.525229	1:+85324269	MsaT005798.1:CDS
TGAACCATCATTTCCGGCGG+AGG	0.529418	1:-85324104	None:intergenic
CCATTCGATGGTTTGACCGT+CGG	0.532798	1:-85323751	None:intergenic
GGTTCCGTCGGGGTTAGACA+TGG	0.533278	1:-85323550	None:intergenic
CCGGTGGCGGCGATGATGGA+GGG	0.534932	1:-85323792	None:intergenic
TGTTGGTTCTCTTTCAACAC+CGG	0.535689	1:+85324007	MsaT005798.1:CDS
GTCAATGATTGAACCGTTCG+TGG	0.543005	1:-85323586	None:intergenic
ATTGGAGCCACGAAGTGAAA+CGG	0.550877	1:-85323850	None:intergenic
TTCCGGCGGAGGAGCACCGG+CGG	0.553371	1:-85324093	None:intergenic
GAAACTTGCCGGAGTTGTGC+CGG	0.558406	1:-85323817	None:intergenic
CGGTTTGTGGTCGAGTGAAG+TGG	0.560737	1:-85323895	None:intergenic
GCAAGCAAATTGAGATGACC+AGG	0.567406	1:-85324254	None:intergenic
GCATACGAATACGGCGTCCA+CGG	0.572506	1:-85323674	None:intergenic
TTGACGGAGGAGCCATTCGA+TGG	0.578156	1:-85323763	None:intergenic
CGGAGTTGTGCCGGTACCGG+TGG	0.578615	1:-85323808	None:intergenic
ACAACAACAACCACCACGAA+CGG	0.583850	1:+85323573	MsaT005798.1:CDS
GGTAAAGCCCAAAGAGCCGC+CGG	0.587790	1:-85324026	None:intergenic
ATACGTTTACCGAGAATGAA+CGG	0.599547	1:-85323933	None:intergenic
GGCCGTCGACTTTACTGTGA+CGG	0.604244	1:-85323653	None:intergenic
CCGACGGTCAAACCATCGAA+TGG	0.640967	1:+85323751	MsaT005798.1:CDS
TTTGTGGTCGAGTGAAGTGG+AGG	0.647959	1:-85323892	None:intergenic
TTACCGAGAATGAACGGCGT+AGG	0.649539	1:-85323927	None:intergenic
GACTGAACCATCATTTCCGG+CGG	0.662606	1:-85324107	None:intergenic
GACCGTCACAGTAAAGTCGA+CGG	0.664072	1:+85323651	MsaT005798.1:CDS
TGGTTCTCTTTCAACACCGG+CGG	0.671866	1:+85324010	MsaT005798.1:CDS
GTGGACATGGAAATTCTGGT+CGG	0.673965	1:+85324288	MsaT005798.1:CDS
AATGATTGAACCGTTCGTGG+TGG	0.682160	1:-85323583	None:intergenic
TGTGAGCTGGAAGACACGTG+CGG	0.686113	1:-85323709	None:intergenic
AAAACCATGTCTAACCCCGA+CGG	0.687631	1:+85323546	None:intergenic
TTGTTGTTGTGGTTCCGTCG+GGG	0.691268	1:-85323560	None:intergenic
TGGAGGGTTCAGCTTGACGG+AGG	0.697001	1:-85323776	None:intergenic
GAATTAGGTCACAAATCCGA+CGG	0.701084	1:+85323735	MsaT005798.1:CDS
AACGGCGTAGGAGAGAGAAG+CGG	0.760443	1:-85323915	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	85323552	85324331	85323552	ID=MsaG005798
Chr1	mRNA	85323552	85324331	85323552	ID=MsaT005798.1;Parent=MsaG005798
Chr1	exon	85323552	85324331	85323552	ID=MsaT005798.1.exon1;Parent=MsaT005798.1
Chr1	CDS	85323552	85324331	85323552	ID=cds.MsaT005798.1;Parent=MsaT005798.1

Gene Sequence

>MsaT005798.1

ATGTCTAACCCCGACGGAACCACAACAACAACCACCACGAACGGTTCAATCATTGACCCAAACCGTCAACAACTAGCCGTCAAAAAACCGCCGGCAAAAGACCGTCACAGTAAAGTCGACGGCCGTGGACGCCGTATTCGTATGCCAATCATATGCGCCGCACGTGTCTTCCAGCTCACACGCGAATTAGGTCACAAATCCGACGGTCAAACCATCGAATGGCTCCTCCGTCAAGCTGAACCCTCCATCATCGCCGCCACCGGTACCGGCACAACTCCGGCAAGTTTCTCTTCTCTCTCCGTTTCACTTCGTGGCTCCAATAACTCTCTCCCTTCTCCTTCCTCCACTTCACTCGACCACAAACCGCTTCTCTCTCCTACGCCGTTCATTCTCGGTAAACGTATTCGCACTGATGATGATTCTTCTTCTTCTTCTGCTAAAGATGATGCTCTTTCTGTTGGTTCTCTTTCAACACCGGCGGCTCTTTGGGCTTTACCTGCACGGCCTGATTTTGGTCAAATTTGGAGCTTTGCTGCTGCTGCCGCCGGTGCTCCTCCGCCGGAAATGATGGTTCAGTCTTTGTCTCAGCAGCAACATCAGGTTCAAGCTAATTTCTTTGCTCATCATCATCAGCAGCAACAGCAACAACAGCATCAACAAGTTATGGGTGAAGCTTCAGCTGCTAGAGTTGGGAATTATCTTCCTGGTCATCTCAATTTGCTTGCTTCGTTGTCTGGTGGACATGGAAATTCTGGTCGGAGAGATGATGAACATCATTGA

Protein sequence

>MsaT005798.1

MSNPDGTTTTTTTNGSIIDPNRQQLAVKKPPAKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSVSLRGSNNSLPSPSSTSLDHKPLLSPTPFILGKRIRTDDDSSSSSAKDDALSVGSLSTPAALWALPARPDFGQIWSFAAAAAGAPPPEMMVQSLSQQQHQVQANFFAHHHQQQQQQQHQQVMGEASAARVGNYLPGHLNLLASLSGGHGNSGRRDDEHH*