AlfalfaGEDB | MsaG005816

M. sativa ssp. caerulea / MsaG005816

KEGG: K09260
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042995 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090406 GO:0120025 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00319.21

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005816	KEH44429.1	91.808	354	22	1	1	354	1	347	0.0	653

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005816	sp\|Q9FIM0\|AGL82_ARATH	27.189	217	136	6	6	219	6	203	1.30e-17	85.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005816	tr\|A0A072VR19\|A0A072VR19_MEDTR	91.808	354	22	1	1	354	1	347	0.0	653

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG005816	TF	MADS-M-type

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005816	MtrunA17_Chr1g0212151	91.808	354	22	1	1	354	1	347	0.0	653
MsaG005816	MtrunA17_Chr6g0457851	73.034	356	84	2	1	354	11	356	0.0	531
MsaG005816	MtrunA17_Chr6g0449861	61.389	360	120	6	1	354	9	355	1.57e-145	415
MsaG005816	MtrunA17_Chr6g0449851	57.020	349	109	4	1	349	1	308	7.59e-134	384
MsaG005816	MtrunA17_Chr4g0059631	41.935	155	87	1	1	155	1	152	4.56e-36	131
MsaG005816	MtrunA17_Chr1g0212471	32.973	185	123	1	1	185	1	184	2.81e-33	122
MsaG005816	MtrunA17_Chr4g0022641	35.000	200	117	3	1	200	1	187	6.67e-32	123
MsaG005816	MtrunA17_Chr2g0303981	38.365	159	93	2	3	160	5	159	1.87e-29	112
MsaG005816	MtrunA17_Chr5g0432691	34.454	119	70	4	1	118	1	112	6.61e-16	74.3
MsaG005816	MtrunA17_Chr3g0134451	33.945	109	64	3	1	109	1	101	4.08e-14	72.4

Showing 1 to 10 of 20 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005816	AT5G55690.1	39.310	145	80	2	1	144	1	138	5.72e-25	102
MsaG005816	AT5G55690.2	39.310	145	80	2	1	144	1	138	5.72e-25	102
MsaG005816	AT5G58890.1	27.189	217	136	6	6	219	6	203	1.32e-18	85.5
MsaG005816	AT3G18650.1	34.815	135	74	5	16	144	31	157	2.98e-15	76.6
MsaG005816	AT1G22590.2	29.677	155	98	3	1	150	1	149	4.85e-13	67.0
MsaG005816	AT1G65300.1	33.636	110	64	4	5	112	4	106	5.99e-13	68.9
MsaG005816	AT1G65330.1	33.333	111	67	4	3	112	2	106	1.01e-12	68.2
MsaG005816	AT3G05860.3	28.426	197	117	6	1	185	1	185	1.06e-12	67.8
MsaG005816	AT5G23260.3	26.087	207	130	6	1	202	1	189	1.09e-12	67.4
MsaG005816	AT3G05860.2	37.662	77	42	2	1	77	1	71	1.21e-12	66.6

Showing 1 to 10 of 27 entries

Previous1 2 3Next

Find 80 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCTCGACCTACAAAAT+TGG	0.237707	1:+85474148	None:intergenic
AACATCAACATCACAAAGAA+TGG	0.436469	1:+85474190	None:intergenic
AAGGAAGGATGGAGCTGAAA+AGG	0.426747	1:-85473433	MsaT005816.1:CDS
AAGGACAAAAGAGAGGTGCA+TGG	0.644602	1:-85474104	MsaT005816.1:CDS
AATAGCTCATGAATCACACA+AGG	0.705760	1:-85473811	MsaT005816.1:CDS
AATCCTCGACCTACAAAATT+GGG	0.455489	1:+85474149	None:intergenic
AATCTCTCAAATCTACAACA+TGG	0.661149	1:-85473324	MsaT005816.1:CDS
AATGAATCTTTCAATTCTCT+TGG	0.359377	1:-85473933	MsaT005816.1:CDS
AATGCTAATGATACCTACAA+TGG	0.561788	1:-85473501	MsaT005816.1:CDS
ACAAGAATATTGATGTTAAT+GGG	0.303821	1:-85473545	MsaT005816.1:CDS

Showing 1 to 10 of 80 entries

Previous1 2 3 4 5…8Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	85473254	85474318	85473254	ID=MsaG005816
Chr1	mRNA	85473254	85474318	85473254	ID=MsaT005816.1;Parent=MsaG005816
Chr1	exon	85473254	85474318	85473254	ID=MsaT005816.1.exon1;Parent=MsaT005816.1
Chr1	CDS	85473254	85474318	85473254	ID=cds.MsaT005816.1;Parent=MsaT005816.1

Gene Sequence

>MsaT005816.1

ATGGGTCGTGGAAGAATATCTATGGAACTCATCCAAAAGGAGAAATCACGGAAGTCAACATTTCAAAAGAGAAAGGAAGGATTAATGAAAAAAGTGAATGAATTTTCCATTCTTTGTGATGTTGATGTTTGTGTAGTTCTCTATGCTCCCAATTTTGTAGGTCGAGGATTTGCTGAACCTGAAACATGGCCTAAGGACAAAAGAGAGGTGCATGGAATCCTTCAAAAGTACTATAACACAACAAATGATAGGCGTCCTAAGATCTATGATGTTCAAGAGTATTTTAAGGAAAGGATGAGAAAACTTGAATTTGAGATTTCCAAAGTGCGTAAAGAGAAACTAAAGATGATGTATCCAACTTGGAATGAATCTTTCAATTCTCTTGGAGCGGAACAACTGATATTATTTGCTAGCAAACTGGAAGCTAAGCTTGATGCTTGTAATCAAAAGAAGCATATGCTAAAAGAAGATCATAAGGGAAAAACAATAGCTCATGAATCACACAAGGTAGATAAACTTATCAGTACTCCTTCCTTGACCGCAAATCCAAGTTACTACTTCAATCTCATGCAAAATTCCATGCCTCAAGCACAAACATATCCTCCAATGATGAATATTAGTGATAAAAACCCCTTAGGGTTTTGGCCACTTCAACCGGGACAAAGCTCTCAACCTTCTTCTTTGATTTCCAATATACAAAGCTCGCACCATGTGGAGTCTGAGGAGGGTAGATTTGTGCAGTCTTACCCCTACAAGAATATTGATGTTAATGGGGCTATTTGGGCCAATCAGGTTAATGCTAATGATACCTACAATGGGGGTTATCAGGACCGATGCTTCGGGCTTCCCAAAATCAATATGGAAAGGAAGGATGGAGCTGAAAAGGATGAAAACTCGTCACCATACTATTACAATGGAAATGCAATGGCAATGCAATCAAATCCTATTGCCTTGCACACTCTCCCTTTTCAGAATCTCTCAAATCTACAACATGGATTTCAACTTAATGGATTCAATGCTAAGGATATTCTGCAAGCTCATATGTTCATGAATGGAAGGAAGTAG

Protein sequence

>MsaT005816.1

MGRGRISMELIQKEKSRKSTFQKRKEGLMKKVNEFSILCDVDVCVVLYAPNFVGRGFAEPETWPKDKREVHGILQKYYNTTNDRRPKIYDVQEYFKERMRKLEFEISKVRKEKLKMMYPTWNESFNSLGAEQLILFASKLEAKLDACNQKKHMLKEDHKGKTIAHESHKVDKLISTPSLTANPSYYFNLMQNSMPQAQTYPPMMNISDKNPLGFWPLQPGQSSQPSSLISNIQSSHHVESEEGRFVQSYPYKNIDVNGAIWANQVNANDTYNGGYQDRCFGLPKINMERKDGAEKDENSSPYYYNGNAMAMQSNPIALHTLPFQNLSNLQHGFQLNGFNAKDILQAHMFMNGRK*