AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005831


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005831 MtrunA17_Chr1g0212331 91.109 1046 29 6 1 988 1 1040 0.0 1926
MsaG005831 MtrunA17_Chr2g0281601 54.771 807 291 15 243 988 510 1303 0.0 794
MsaG005831 MtrunA17_Chr1g0168031 30.790 747 319 20 310 986 534 1152 1.85e-89 310
MsaG005831 MtrunA17_Chr4g0024921 28.169 852 384 22 247 987 200 934 1.95e-82 287
MsaG005831 MtrunA17_Chr2g0320751 27.264 1005 508 33 95 986 121 1015 6.42e-80 281
MsaG005831 MtrunA17_Chr7g0255821 27.692 780 357 23 269 986 186 820 5.44e-74 261
MsaG005831 MtrunA17_Chr1g0163011 38.168 131 67 1 849 965 588 718 2.99e-20 96.7
MsaG005831 MtrunA17_Chr5g0403921 37.681 138 69 3 849 969 524 661 1.19e-18 91.7
MsaG005831 MtrunA17_Chr7g0257101 38.583 127 64 1 845 957 1206 1332 1.27e-18 92.0
MsaG005831 MtrunA17_Chr5g0428401 26.882 372 203 12 386 703 475 831 1.86e-18 91.7
MsaG005831 MtrunA17_Chr4g0017211 28.767 292 161 7 740 986 1693 1982 7.53e-18 89.7
MsaG005831 MtrunA17_Chr4g0017211 24.242 297 149 7 401 660 1508 1765 5.73e-14 77.0
MsaG005831 MtrunA17_Chr1g0175191 36.508 126 66 1 849 960 1080 1205 1.19e-17 89.0
MsaG005831 MtrunA17_Chr1g0175191 24.286 280 150 9 402 661 574 811 8.46e-13 73.2
MsaG005831 MtrunA17_Chr4g0052341 33.333 150 79 4 849 982 1078 1222 2.16e-15 81.6
MsaG005831 MtrunA17_Chr3g0095091 23.488 281 151 7 402 661 624 861 5.93e-13 73.6
MsaG005831 MtrunA17_Chr3g0095091 33.594 128 68 3 849 961 905 1030 1.89e-11 68.6
MsaG005831 MtrunA17_Chr4g0066741 36.441 118 60 3 849 951 507 624 1.65e-12 72.0
MsaG005831 MtrunA17_Chr8g0348721 34.146 123 63 3 849 956 1331 1450 1.72e-12 72.0
MsaG005831 MtrunA17_Chr2g0286291 36.441 118 60 3 849 951 510 627 2.78e-12 71.2
MsaG005831 MtrunA17_Chr4g0040301 33.333 126 70 1 849 960 398 523 3.07e-12 70.9
MsaG005831 MtrunA17_Chr1g0183681 31.667 120 68 1 849 954 753 872 3.14e-12 71.2
MsaG005831 MtrunA17_Chr7g0248031 32.520 123 65 3 849 956 1339 1458 6.20e-11 67.0
MsaG005831 MtrunA17_Chr1g0205891 31.613 155 88 3 849 988 704 855 6.82e-11 66.6
MsaG005831 MtrunA17_Chr5g0394201 30.719 153 88 3 849 986 690 839 8.04e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005831 AT1G50410.2 55.382 1022 324 20 58 988 1 981 0.0 1003
MsaG005831 AT1G50410.1 55.382 1022 324 20 58 988 1 981 0.0 1003
MsaG005831 AT1G50410.3 55.382 1022 324 20 58 988 1 981 0.0 1003
MsaG005831 AT3G20010.1 51.268 1065 367 21 58 988 1 1047 0.0 944
MsaG005831 AT3G20010.5 51.268 1065 367 21 58 988 1 1047 0.0 944
MsaG005831 AT3G20010.7 51.268 1065 367 21 58 988 1 1047 0.0 944
MsaG005831 AT3G20010.3 58.534 791 243 12 273 988 1 781 0.0 862
MsaG005831 AT1G50410.4 52.928 922 316 19 58 902 1 881 0.0 851
MsaG005831 AT3G20010.2 57.963 766 237 12 298 988 1 756 0.0 820
MsaG005831 AT3G20010.4 48.494 963 358 20 58 900 1 945 0.0 793
MsaG005831 AT3G20010.6 48.494 963 358 20 58 900 1 945 0.0 793
MsaG005831 AT3G20010.8 48.494 963 358 20 58 900 1 945 0.0 793
MsaG005831 AT1G61140.3 51.086 783 298 15 258 987 369 1119 0.0 703
MsaG005831 AT1G61140.1 51.341 783 296 16 258 987 527 1277 0.0 701
MsaG005831 AT1G11100.4 49.301 787 304 14 262 987 517 1269 0.0 674
MsaG005831 AT1G11100.2 49.301 787 304 14 262 987 516 1268 0.0 674
MsaG005831 AT1G11100.3 49.301 787 304 14 262 987 374 1126 0.0 674
MsaG005831 AT1G11100.1 48.877 757 308 13 262 987 517 1225 0.0 651
MsaG005831 AT1G11100.5 48.877 757 308 13 262 987 374 1082 0.0 651
MsaG005831 AT3G16600.1 46.667 510 201 6 251 759 17 456 9.19e-148 454
MsaG005831 AT3G16600.1 58.763 97 26 1 885 967 493 589 4.34e-22 102
MsaG005831 AT1G61140.2 52.610 479 178 11 258 702 534 997 5.83e-142 451
MsaG005831 AT5G22750.1 28.674 837 383 26 247 986 309 1028 2.42e-84 294
MsaG005831 AT5G43530.1 31.034 725 322 23 310 986 682 1276 5.87e-84 296
MsaG005831 AT5G05130.1 28.829 777 387 20 246 965 192 859 2.12e-71 255
MsaG005831 AT1G05120.1 28.451 710 317 17 398 986 192 831 7.88e-66 238
MsaG005831 AT1G05120.2 28.451 710 317 17 398 986 235 874 1.43e-65 238
MsaG005831 AT1G02670.4 31.861 317 153 7 393 672 172 462 1.11e-33 137
MsaG005831 AT1G02670.5 31.861 317 153 7 393 672 145 435 2.57e-33 137
MsaG005831 AT1G02670.5 44.554 101 42 1 849 935 512 612 7.11e-17 85.9
MsaG005831 AT1G02670.2 31.861 317 153 7 393 672 172 462 2.81e-33 137
MsaG005831 AT1G02670.2 44.554 101 42 1 849 935 539 639 6.23e-17 86.3
MsaG005831 AT1G02670.3 32.492 317 151 7 393 672 172 462 4.06e-33 137
MsaG005831 AT1G02670.3 42.105 152 73 2 849 986 539 689 4.00e-26 115
MsaG005831 AT1G02670.6 31.861 317 153 7 393 672 145 435 4.16e-33 137
MsaG005831 AT1G02670.6 42.105 152 73 2 849 986 512 662 4.19e-26 115
MsaG005831 AT1G02670.1 31.395 344 168 12 393 715 183 479 5.50e-32 134
MsaG005831 AT1G02670.1 42.105 152 73 2 849 986 527 677 7.00e-26 114
MsaG005831 AT1G02670.7 31.195 343 170 11 393 715 172 468 6.60e-32 133
MsaG005831 AT1G02670.7 42.105 152 73 2 849 986 516 666 5.83e-26 115
MsaG005831 AT2G02090.1 38.961 154 69 3 834 964 582 733 6.57e-22 102
MsaG005831 AT2G40770.2 28.041 296 162 10 399 657 500 781 1.59e-21 102
MsaG005831 AT2G40770.1 28.041 296 162 10 399 657 500 781 1.59e-21 102
MsaG005831 AT2G40770.3 28.041 296 162 10 399 657 500 781 1.59e-21 102
MsaG005831 AT3G57300.2 36.620 142 76 1 845 972 1253 1394 3.82e-19 94.4
MsaG005831 AT3G57300.1 36.620 142 76 1 845 972 1220 1361 3.89e-19 94.4
MsaG005831 AT3G57300.4 36.620 142 76 1 845 972 1220 1361 3.89e-19 94.4
MsaG005831 AT5G66750.1 35.821 134 71 2 849 967 542 675 4.05e-19 93.6
MsaG005831 AT3G54280.1 29.114 237 126 5 790 986 1750 1984 8.53e-19 93.2
MsaG005831 AT3G54280.2 29.114 237 126 5 790 986 1781 2015 8.53e-19 93.2
MsaG005831 AT3G12810.1 37.795 127 65 1 846 958 1090 1216 7.67e-18 90.1
MsaG005831 AT3G12810.2 37.795 127 65 1 846 958 1086 1212 7.73e-18 90.1
MsaG005831 AT5G44800.1 33.600 125 67 2 849 957 1022 1146 1.35e-13 76.3
MsaG005831 AT4G31900.3 24.913 289 161 8 402 679 276 519 1.74e-13 75.5
MsaG005831 AT4G31900.1 24.913 289 161 8 402 679 276 519 1.93e-13 75.5
MsaG005831 AT4G31900.2 24.913 289 161 8 402 679 235 478 2.24e-13 75.1
MsaG005831 AT2G44980.1 33.333 135 75 2 849 968 386 520 4.28e-13 74.3
MsaG005831 AT1G03750.1 34.127 126 69 1 849 960 546 671 1.86e-12 72.0
MsaG005831 AT5G18620.1 34.746 118 62 3 849 951 513 630 7.77e-12 70.1
MsaG005831 AT2G44980.2 31.724 145 74 3 849 968 395 539 7.85e-12 70.1
MsaG005831 AT5G18620.2 34.746 118 62 3 849 951 513 630 8.05e-12 70.1
MsaG005831 AT2G44980.3 31.724 145 74 3 849 968 394 538 8.11e-12 70.1
MsaG005831 AT2G13370.1 33.594 128 68 3 849 961 957 1082 8.93e-12 70.1
MsaG005831 AT2G13370.2 33.594 128 68 3 849 961 957 1082 8.93e-12 70.1
MsaG005831 AT2G13370.3 33.594 128 68 3 849 961 957 1082 8.93e-12 70.1
MsaG005831 AT3G06400.3 34.746 118 62 3 849 951 508 625 1.31e-11 69.3
MsaG005831 AT3G06400.1 34.746 118 62 3 849 951 508 625 1.37e-11 69.3
MsaG005831 AT3G06400.2 34.746 118 62 3 849 951 508 625 1.38e-11 69.3
MsaG005831 AT2G18760.3 30.000 120 70 1 849 954 804 923 2.78e-11 68.6
MsaG005831 AT2G18760.4 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT2G18760.1 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT2G18760.2 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT2G18760.7 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT2G18760.5 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT2G18760.6 30.000 120 70 1 849 954 745 864 2.88e-11 68.6
MsaG005831 AT5G63950.2 30.000 130 77 1 849 964 733 862 5.98e-11 67.4
MsaG005831 AT5G63950.1 30.000 130 77 1 849 964 750 879 6.44e-11 67.4
MsaG005831 AT2G46020.5 35.965 114 56 4 849 947 1325 1436 6.97e-11 67.4
MsaG005831 AT2G46020.1 35.965 114 56 4 849 947 1325 1436 6.97e-11 67.4
MsaG005831 AT2G46020.6 35.965 114 56 4 849 947 1325 1436 6.97e-11 67.4
MsaG005831 AT2G46020.2 35.965 114 56 4 849 947 1326 1437 7.33e-11 67.4
MsaG005831 AT2G46020.3 35.965 114 56 4 849 947 1326 1437 7.33e-11 67.4
MsaG005831 AT2G46020.4 35.965 114 56 4 849 947 1326 1437 7.33e-11 67.4

Find 215 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGTAGGTGGTTGGGTTTC+TGG 0.027826 1:-85652486 MsaT005831.1:CDS
TGATTCACGTTCTCAATTTA+AGG 0.116064 1:-85648045 MsaT005831.1:intron
CATTTGATGGTTCTATTTCT+AGG 0.130546 1:-85652341 MsaT005831.1:CDS
TTGAATAAATTTCTGGATAT+TGG 0.132283 1:+85649023 None:intergenic
TGTAACCTTGAATAAATTTC+TGG 0.153594 1:+85649016 None:intergenic
AATTCAAGGCTTCAGCTTTA+TGG 0.156810 1:+85649762 None:intergenic
TAAAGCTGAAGCCTTGAATT+TGG 0.196050 1:-85649759 MsaT005831.1:CDS
ATTAGTCTCTCATCAGTTTC+AGG 0.221036 1:+85651583 None:intergenic
AAGTTATTTAATCTGTTATT+AGG 0.236063 1:+85651849 None:intergenic
GAACTACTCGGTTCAGTAAT+AGG 0.252859 1:+85649659 None:intergenic
AGGAAACCTTGGTTTAAATA+TGG 0.268636 1:-85645953 MsaT005831.1:CDS
TGAATAAATTTCTGGATATT+GGG 0.275652 1:+85649024 None:intergenic
CCAGAGCTTGCTCCAGCCTT+AGG 0.279556 1:-85649175 MsaT005831.1:CDS
ATGATTTATATAGCTACTTT+AGG 0.279893 1:-85649103 MsaT005831.1:CDS
TGGAAGTAAGAAGGGTAAAA+AGG 0.284452 1:-85649312 MsaT005831.1:intron
GAAGACCATGCTGGCGGTTC+TGG 0.285184 1:-85645040 MsaT005831.1:CDS
CTCGGACCAGGTTGATTATT+GGG 0.293648 1:+85652032 None:intergenic
AATTTATGAAGCAGCATTAC+AGG 0.294583 1:-85651563 MsaT005831.1:intron
GCCTCCTAAAACAATTAATC+TGG 0.315310 1:-85648120 MsaT005831.1:CDS
CTCCTCGACTAACGGTTGTT+TGG 0.316018 1:+85649418 None:intergenic
TTAGGAGGCAAAGTGATTAT+AGG 0.316851 1:+85648134 None:intergenic
AAAGGCAATCACAGATAAAA+TGG 0.318808 1:-85649805 MsaT005831.1:CDS
TGTCTAGGAACTTTGCTTGA+TGG 0.323557 1:-85648161 MsaT005831.1:intron
CTTCCTCCATCTTTGATGCT+TGG 0.327393 1:-85651678 MsaT005831.1:CDS
CACTGCCGAAGAACACTTGC+AGG 0.334877 1:+85649584 None:intergenic
GCTCGGACCAGGTTGATTAT+TGG 0.339372 1:+85652031 None:intergenic
CAGGTTGGCTCTGCATTTGA+TGG 0.340581 1:-85652354 MsaT005831.1:CDS
AAACAGGAGTTTGCATTGCT+TGG 0.345698 1:-85649984 MsaT005831.1:CDS
CACCATTGGAATTAGAAATT+CGG 0.346379 1:+85651973 None:intergenic
AGCTTCCAACTTCTTGTAGA+AGG 0.347975 1:+85648067 None:intergenic
TCTGTGATTGCCTTTGCATT+AGG 0.354321 1:+85649813 None:intergenic
GCAACTCCTCAAAGTTGCTT+TGG 0.369209 1:+85646700 None:intergenic
TCCTCGACTAACGGTTGTTT+GGG 0.372223 1:+85649419 None:intergenic
AACAGGAGTTTGCATTGCTT+GGG 0.374896 1:-85649983 MsaT005831.1:CDS
CGAATCAGAATGGTGGGATC+AGG 0.374903 1:-85651704 MsaT005831.1:CDS
GCTGCTTCTGAAAGGAATTC+AGG 0.375573 1:-85652201 MsaT005831.1:intron
ATTGATCGAGCTCATAGAAT+TGG 0.376291 1:-85645870 MsaT005831.1:CDS
GAAAAGGACGGGGAAAAGTT+TGG 0.380861 1:-85649383 MsaT005831.1:CDS
TACAGTTGAAGATAGAATAT+TGG 0.382555 1:-85645805 MsaT005831.1:CDS
AAAAGAAGGTGGTGCTTGTC+TGG 0.385925 1:-85649149 MsaT005831.1:CDS
TGCGAGGGACAGAGCTGTTA+AGG 0.386134 1:-85646294 MsaT005831.1:CDS
ATGTGCTCTTGTAGGTGGTT+GGG 0.388007 1:-85652493 MsaT005831.1:CDS
TAACTCACCACTTGTGTGTA+AGG 0.389350 1:+85652450 None:intergenic
GATCAATCTGTTTAATAGTC+TGG 0.392290 1:-85647644 MsaT005831.1:CDS
AAATATTCAGAGTGCACATC+TGG 0.395770 1:-85646434 MsaT005831.1:CDS
TGTACTCACTGTTCTGTACT+AGG 0.396558 1:+85646621 None:intergenic
CTGCAAGTGTTCTTCGGCAG+TGG 0.399264 1:-85649583 MsaT005831.1:CDS
TGATGGTTCTATTTCTAGGT+TGG 0.399857 1:-85652337 MsaT005831.1:CDS
TCATCAATGGTATTCTGAAT+AGG 0.400698 1:+85649122 None:intergenic
CAGTGAATCTCTATTGCCTT+CGG 0.400819 1:+85646520 None:intergenic
AATACCTGATGTCTCATTAG+AGG 0.401255 1:+85650152 None:intergenic
ACCTTGTTCAAACAGGGTCT+TGG 0.402982 1:-85649863 MsaT005831.1:intron
AGATAGAATATTGGCTCTAC+AGG 0.403717 1:-85645796 MsaT005831.1:intron
GTGATCCGTGTCACAGTAAC+AGG 0.411769 1:+85645837 None:intergenic
TGAATCAAAATCTTCAATAT+CGG 0.413189 1:+85646484 None:intergenic
CCTAAGGCTGGAGCAAGCTC+TGG 0.413231 1:+85649175 None:intergenic
AGTGAATCTCTATTGCCTTC+GGG 0.416076 1:+85646521 None:intergenic
GGAGTAGGACCTAGCACATC+TGG 0.416344 1:-85651783 MsaT005831.1:CDS
AGATTGATCAGCATCTCCTT+TGG 0.419161 1:+85647658 None:intergenic
CAGAGCTTGCTCCAGCCTTA+GGG 0.421331 1:-85649174 MsaT005831.1:CDS
GTCAAATACAGGAGACTTGA+TGG 0.424033 1:-85646332 MsaT005831.1:CDS
TCCAGAAAATTGCACTGGCT+TGG 0.424086 1:-85650021 MsaT005831.1:intron
ATCATCATCATCCAAATTCA+AGG 0.426949 1:+85649748 None:intergenic
CAGCATAAGGATCATACTTC+AGG 0.428885 1:+85649078 None:intergenic
TCAACAGAATCTTTCCCAAC+AGG 0.429310 1:+85647697 None:intergenic
GTAGAAGGCCCGCTCCTCAT+AGG 0.430281 1:+85648082 None:intergenic
GATGGTTCTATTTCTAGGTT+GGG 0.431235 1:-85652336 MsaT005831.1:CDS
CTTTCAGAAGCAGCCCATCT+TGG 0.431602 1:+85652210 None:intergenic
AAAATGGTGGCATCTGCATT+TGG 0.431781 1:-85645064 MsaT005831.1:CDS
TTGGAGGAGATTGTAGATCC+TGG 0.438864 1:-85652243 MsaT005831.1:CDS
TTCATTGTAAAGAACAACTT+GGG 0.444221 1:-85646739 MsaT005831.1:CDS
TGGTAGTATTGATGTGGAAA+AGG 0.445155 1:-85649720 MsaT005831.1:CDS
ACCATTGGAATTAGAAATTC+GGG 0.448176 1:+85651974 None:intergenic
GTGCTTCCATTGCTCGGACC+AGG 0.448588 1:+85652020 None:intergenic
TGTTCTTTACAATGAACTGC+AGG 0.451989 1:+85646746 None:intergenic
AGCAATCTGGCGTCAAATAC+AGG 0.452070 1:-85646343 MsaT005831.1:CDS
CTCAAACGATAAAGAATCAT+AGG 0.453758 1:-85649208 MsaT005831.1:CDS
GGATGCTTCAGAGGGAAAAC+AGG 0.455159 1:-85650000 MsaT005831.1:CDS
AATATCCAGAAATTTATTCA+AGG 0.456006 1:-85649021 MsaT005831.1:CDS
GGAGGATGATATTGATGAAA+AGG 0.456198 1:-85649399 MsaT005831.1:CDS
GCTATATAATGGAAGTAAGA+AGG 0.460022 1:-85649321 MsaT005831.1:CDS
TTTCTCATAACCGGCACCAT+TGG 0.465345 1:+85651959 None:intergenic
AATATAATTCTGATCCTGTT+GGG 0.465695 1:-85647711 MsaT005831.1:CDS
TATGTGCTCTTGTAGGTGGT+TGG 0.470245 1:-85652494 MsaT005831.1:CDS
AATGATTTATACACAGCATA+AGG 0.470686 1:+85649065 None:intergenic
TTGCAGGCATATGCAGCTGC+TGG 0.472343 1:-85647817 MsaT005831.1:intron
CACTGGCTTGGATGCTTCAG+AGG 0.473005 1:-85650009 MsaT005831.1:CDS
TCTGCCCTGCAAGTGTTCTT+CGG 0.476335 1:-85649589 MsaT005831.1:CDS
GTGGACTAGCATGTTGGACT+TGG 0.476758 1:-85646381 MsaT005831.1:CDS
AAAGAAGCTGATTTACCTGC+TGG 0.477068 1:-85650188 MsaT005831.1:CDS
TTCTAGGTTGGGCAACGAAA+GGG 0.477557 1:-85652325 MsaT005831.1:CDS
TGGAGACTATGTGCTCTTGT+AGG 0.479611 1:-85652501 MsaT005831.1:CDS
GAAGGTTGATTTCTCCTATG+AGG 0.479926 1:-85648096 MsaT005831.1:CDS
TGGGAAAGATTCTGTTGAAA+TGG 0.482246 1:-85647692 MsaT005831.1:CDS
AGAGAGCTTGATGAGAAAGT+TGG 0.483880 1:-85649557 MsaT005831.1:CDS
CTCTGGAGCAGGTGATGAAA+GGG 0.484074 1:-85651608 MsaT005831.1:intron
CTGGGAGGATTCTTCCAAGA+TGG 0.484682 1:-85652224 MsaT005831.1:CDS
TGACTTGTGCTTCCATTGCT+CGG 0.489521 1:+85652014 None:intergenic
TAGTTCGTCGGACGATGAGT+TGG 0.489567 1:-85652262 MsaT005831.1:CDS
CACAGGCCCCAGGTAGGAAA+AGG 0.493320 1:-85649634 MsaT005831.1:CDS
GAATATAATTCTGATCCTGT+TGG 0.494306 1:-85647712 MsaT005831.1:CDS
AGTTGCCTCTGTGACGATCT+TGG 0.495610 1:-85646683 MsaT005831.1:CDS
ATGATATTGATGAAAAGGAC+GGG 0.495663 1:-85649394 MsaT005831.1:CDS
GAGACATCAATGGAGCAATC+TGG 0.496744 1:-85646356 MsaT005831.1:CDS
TATATTCCAGAAAATTGCAC+TGG 0.501956 1:-85650026 MsaT005831.1:intron
TGATTTCTCCTATGAGGAGC+GGG 0.509422 1:-85648090 MsaT005831.1:CDS
TGCAAGTGTTCTTCGGCAGT+GGG 0.509603 1:-85649582 MsaT005831.1:CDS
AGGAGTTTGCATTGCTTGGG+GGG 0.512503 1:-85649980 MsaT005831.1:CDS
CACATCTGGAGGACCACTAA+AGG 0.513599 1:-85646420 MsaT005831.1:CDS
TTCTCAGTGGACTAGCATGT+TGG 0.514207 1:-85646387 MsaT005831.1:CDS
AAGGCCAGCTGCTGGTACAC+TGG 0.515179 1:-85649615 MsaT005831.1:CDS
GCCTTTCCAAGCATCAAAGA+TGG 0.516458 1:+85651672 None:intergenic
TCCATCTTTGATGCTTGGAA+AGG 0.517451 1:-85651673 MsaT005831.1:CDS
TCCCGAATTTCTAATTCCAA+TGG 0.518955 1:-85651975 MsaT005831.1:CDS
GCTCTGGAGCAGGTGATGAA+AGG 0.520427 1:-85651609 MsaT005831.1:intron
ACCTAGCACATCTGGTGAGA+AGG 0.521088 1:-85651775 MsaT005831.1:CDS
TTGTCCACATTATCAAGCAT+TGG 0.521854 1:+85652540 None:intergenic
TCACTAAAAGCAGGAAACCT+TGG 0.522451 1:-85645964 MsaT005831.1:CDS
ACAATATTATCGACTCAACT+TGG 0.524986 1:-85652521 MsaT005831.1:CDS
TATATTCTTTAACAAGAAGC+GGG 0.526456 1:+85647728 None:intergenic
TATTATGTACAGATTCAAGA+AGG 0.526786 1:-85652109 MsaT005831.1:intron
GCGGGCCTTCTACAAGAAGT+TGG 0.526893 1:-85648072 MsaT005831.1:CDS
ACAGGAGTTTGCATTGCTTG+GGG 0.528297 1:-85649982 MsaT005831.1:CDS
CAAGCCAATGCTTGATAATG+TGG 0.529172 1:-85652544 None:intergenic
TTCGTCGGACGATGAGTTGG+AGG 0.529816 1:-85652259 MsaT005831.1:CDS
ATGCTGGCGGTTCTGGAACT+CGG 0.531077 1:-85645033 MsaT005831.1:CDS
GCATACAAGAATCGTCATCA+TGG 0.535825 1:-85651804 MsaT005831.1:CDS
GTACCAGATGATTGAAAAGA+TGG 0.539039 1:+85651900 None:intergenic
CTATATAATGGAAGTAAGAA+GGG 0.539807 1:-85649320 MsaT005831.1:CDS
TTCAAAACCTTACACACAAG+TGG 0.540874 1:-85652457 MsaT005831.1:intron
TGGGAGGATTCTTCCAAGAT+GGG 0.542766 1:-85652223 MsaT005831.1:CDS
TTTCTAGGTTGGGCAACGAA+AGG 0.544856 1:-85652326 MsaT005831.1:CDS
ATTTCTAATTCCAATGGTGC+CGG 0.545046 1:-85651969 MsaT005831.1:CDS
AAATAGTTATCTAGATTACA+TGG 0.547848 1:-85652301 MsaT005831.1:CDS
CGCATTGATAACAGAAGACA+TGG 0.550770 1:+85646804 None:intergenic
TGTACCTCTAATGAGACATC+AGG 0.551258 1:-85650156 MsaT005831.1:intron
ACAACCAGTGTACCAGCAGC+TGG 0.551867 1:+85649611 None:intergenic
GTAGCTATATAAATCATCAA+TGG 0.553564 1:+85649109 None:intergenic
TGGAGGAGATTGTAGATCCT+GGG 0.554209 1:-85652242 MsaT005831.1:CDS
CCTAGCACATCTGGTGAGAA+GGG 0.554518 1:-85651774 MsaT005831.1:CDS
GGACTTGGTCGAGACATCAA+TGG 0.556406 1:-85646366 MsaT005831.1:CDS
TTATATTCTTTAACAAGAAG+CGG 0.557473 1:+85647727 None:intergenic
ATGCTGATGTCACTAAAAGC+AGG 0.559813 1:-85645973 MsaT005831.1:CDS
TAAAACAATTAATCTGGAGA+AGG 0.560183 1:-85648114 MsaT005831.1:CDS
GGAGTTTGCATTGCTTGGGG+GGG 0.561095 1:-85649979 MsaT005831.1:CDS
GGTAGGAAAAGGCCAGCTGC+TGG 0.562826 1:-85649623 MsaT005831.1:CDS
GTTCATTGTAAAGAACAACT+TGG 0.563332 1:-85646740 MsaT005831.1:CDS
CAGGAGTTTGCATTGCTTGG+GGG 0.563404 1:-85649981 MsaT005831.1:CDS
ATGATTGAAAAGATGGTGGA+AGG 0.564345 1:+85651907 None:intergenic
CAAGATGGGCTGCTTCTGAA+AGG 0.564924 1:-85652209 MsaT005831.1:CDS
AATCAACCTGGTCCGAGCAA+TGG 0.566425 1:-85652026 MsaT005831.1:CDS
GTGAATCTCTATTGCCTTCG+GGG 0.568781 1:+85646522 None:intergenic
GTACTCACTGTTCTGTACTA+GGG 0.569675 1:+85646622 None:intergenic
ATCGAAATAACAGAGTCATC+AGG 0.572260 1:+85646833 None:intergenic
AGTTGTAAACTGAAGACTCC+TGG 0.572384 1:-85646557 MsaT005831.1:CDS
GAATCAGAATGGTGGGATCA+GGG 0.574020 1:-85651703 MsaT005831.1:CDS
GATGATATTGATGAAAAGGA+CGG 0.575241 1:-85649395 MsaT005831.1:CDS
AGACTATGTGCTCTTGTAGG+TGG 0.578440 1:-85652498 MsaT005831.1:CDS
CTCGTCCTGTTACTGTGACA+CGG 0.583353 1:-85645842 MsaT005831.1:CDS
ATATCATCCTCCTCGACTAA+CGG 0.583591 1:+85649410 None:intergenic
GCATTTGGCGAAGACCATGC+TGG 0.584437 1:-85645049 MsaT005831.1:CDS
AAGAATCGTCATCATGGAGT+AGG 0.586195 1:-85651798 MsaT005831.1:CDS
GGTACAGACATTATACCAGC+AGG 0.590038 1:+85650173 None:intergenic
GACTCTGTTATTTCGATGTG+TGG 0.590515 1:-85646827 MsaT005831.1:CDS
ACTGGCTTGGATGCTTCAGA+GGG 0.591785 1:-85650008 MsaT005831.1:CDS
GATCGTTTCACGAATCAGAA+TGG 0.593273 1:-85651714 MsaT005831.1:CDS
TGCCTCTGTGACGATCTTGG+TGG 0.594445 1:-85646680 MsaT005831.1:CDS
GGATTTCAATACTGATCCTG+AGG 0.595725 1:-85646273 MsaT005831.1:intron
CCCTTCTCACCAGATGTGCT+AGG 0.595968 1:+85651774 None:intergenic
CGTTTCACGAATCAGAATGG+TGG 0.597491 1:-85651711 MsaT005831.1:CDS
GTTTCACGAATCAGAATGGT+GGG 0.599820 1:-85651710 MsaT005831.1:CDS
AAAGAATCATAGGACTCAGA+TGG 0.603963 1:-85649198 MsaT005831.1:CDS
AGTAGTTCAACACAGGCCCC+AGG 0.608515 1:-85649644 MsaT005831.1:CDS
TGATTGAAAAGATGGTGGAA+GGG 0.609027 1:+85651908 None:intergenic
TTGGATGATGATGATGAGAA+TGG 0.612698 1:-85649740 MsaT005831.1:CDS
TTGCTCTCATCCTAATGCAA+AGG 0.614230 1:-85649823 MsaT005831.1:CDS
TGGCAACCATATTTAAACCA+AGG 0.616023 1:+85645947 None:intergenic
GCTTCAGCTTTATGGTTGCG+TGG 0.616461 1:+85649770 None:intergenic
AATACAGGAGACTTGATGGT+AGG 0.619105 1:-85646328 MsaT005831.1:CDS
GGGGCCTGTGTTGAACTACT+CGG 0.619233 1:+85649647 None:intergenic
ATTATGTACAGATTCAAGAA+GGG 0.619950 1:-85652108 MsaT005831.1:intron
GAGTTCCAGAACCGCCAGCA+TGG 0.626039 1:+85645035 None:intergenic
TATTCAGAGTGCACATCTGG+AGG 0.626253 1:-85646431 MsaT005831.1:CDS
GATTCACTAGAACTAGCAAA+CGG 0.627092 1:+85651639 None:intergenic
GTGTATATATATTAGTTCGT+CGG 0.627656 1:-85652274 MsaT005831.1:CDS
TTGATTTCTCCTATGAGGAG+CGG 0.628332 1:-85648091 MsaT005831.1:CDS
TAAAATCAAAGCTGTCCTTG+AGG 0.629967 1:-85646591 MsaT005831.1:CDS
CATCTTGGAAGAATCCTCCC+AGG 0.631366 1:+85652225 None:intergenic
GTTCTTTACAATGAACTGCA+GGG 0.633934 1:+85646747 None:intergenic
TCCAAAAGAATAACATGACA+TGG 0.634696 1:+85645927 None:intergenic
ACTGCCGAAGAACACTTGCA+GGG 0.634815 1:+85649585 None:intergenic
TCAATATCGGAATCATCAGA+AGG 0.635062 1:+85646497 None:intergenic
TTAGGTGCAAATGACGAAGG+TGG 0.636052 1:+85651867 None:intergenic
CCAGATGATTGAAAAGATGG+TGG 0.645944 1:+85651903 None:intergenic
TAGGATGACTCTTACTGCGA+GGG 0.647232 1:-85646309 MsaT005831.1:CDS
TCCCAAACAACCGTTAGTCG+AGG 0.649684 1:-85649420 MsaT005831.1:CDS
TGAGAATGGTAGTATTGATG+TGG 0.651173 1:-85649726 MsaT005831.1:CDS
TGATATTGATGAAAAGGACG+GGG 0.652087 1:-85649393 MsaT005831.1:CDS
GTTAAGCCCAATAATCAACC+TGG 0.653811 1:-85652038 MsaT005831.1:CDS
GAAATAACAGAGTCATCAGG+TGG 0.658456 1:+85646836 None:intergenic
TTTCCAAGCATCAAAGATGG+AGG 0.662100 1:+85651675 None:intergenic
TGAATCTCTATTGCCTTCGG+GGG 0.663579 1:+85646523 None:intergenic
GCGGGTGATCACAAGCCTGA+CGG 0.667422 1:+85647746 None:intergenic
AACTTGACTGCAGAACCTCA+AGG 0.667843 1:+85646576 None:intergenic
CAAACAACCGTTAGTCGAGG+AGG 0.667934 1:-85649417 MsaT005831.1:CDS
TTTGGCGAAGACCATGCTGG+CGG 0.671173 1:-85645046 MsaT005831.1:CDS
TCATTGTAAAGAACAACTTG+GGG 0.686210 1:-85646738 MsaT005831.1:CDS
TTATTAGGTGCAAATGACGA+AGG 0.688311 1:+85651864 None:intergenic
GTAGGATGACTCTTACTGCG+AGG 0.690531 1:-85646310 MsaT005831.1:CDS
TGAACTTGCAAAATATGATG+TGG 0.692648 1:-85649477 MsaT005831.1:CDS
GTTCAACACAGGCCCCAGGT+AGG 0.695205 1:-85649640 MsaT005831.1:CDS
AGGAGATTGTAGATCCTGGG+AGG 0.698705 1:-85652239 MsaT005831.1:CDS
TCACTAGAACTAGCAAACGG+TGG 0.718383 1:+85651642 None:intergenic
TGAACCGAGTAGTTCAACAC+AGG 0.722104 1:-85649651 MsaT005831.1:CDS
TACCACCAAGATCGTCACAG+AGG 0.755206 1:+85646678 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr1 gene 85644994 85652559 85644994 ID=MsaG005831
Chr1 mRNA 85644994 85652559 85644994 ID=MsaT005831.1;Parent=MsaG005831
Chr1 exon 85644994 85645098 85644994 ID=MsaT005831.1.exon14;Parent=MsaT005831.1
Chr1 CDS 85644994 85645098 85644994 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85645797 85645900 85645797 ID=MsaT005831.1.exon13;Parent=MsaT005831.1
Chr1 CDS 85645797 85645900 85645797 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85645941 85646004 85645941 ID=MsaT005831.1.exon12;Parent=MsaT005831.1
Chr1 CDS 85645941 85646004 85645941 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85646274 85646861 85646274 ID=MsaT005831.1.exon11;Parent=MsaT005831.1
Chr1 CDS 85646274 85646861 85646274 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85647612 85647833 85647612 ID=MsaT005831.1.exon10;Parent=MsaT005831.1
Chr1 CDS 85647612 85647833 85647612 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85648046 85648176 85648046 ID=MsaT005831.1.exon9;Parent=MsaT005831.1
Chr1 CDS 85648046 85648176 85648046 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85649003 85649246 85649003 ID=MsaT005831.1.exon8;Parent=MsaT005831.1
Chr1 CDS 85649003 85649246 85649003 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85649313 85649870 85649313 ID=MsaT005831.1.exon7;Parent=MsaT005831.1
Chr1 CDS 85649313 85649870 85649313 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85649961 85650038 85649961 ID=MsaT005831.1.exon6;Parent=MsaT005831.1
Chr1 CDS 85649961 85650038 85649961 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85650157 85650228 85650157 ID=MsaT005831.1.exon5;Parent=MsaT005831.1
Chr1 CDS 85650157 85650228 85650157 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85651564 85651622 85651564 ID=MsaT005831.1.exon4;Parent=MsaT005831.1
Chr1 CDS 85651564 85651622 85651564 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85651652 85652119 85651652 ID=MsaT005831.1.exon3;Parent=MsaT005831.1
Chr1 CDS 85651652 85652119 85651652 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85652202 85652373 85652202 ID=MsaT005831.1.exon2;Parent=MsaT005831.1
Chr1 CDS 85652202 85652373 85652202 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Chr1 exon 85652458 85652559 85652458 ID=MsaT005831.1.exon1;Parent=MsaT005831.1
Chr1 CDS 85652458 85652559 85652458 ID=cds.MsaT005831.1;Parent=MsaT005831.1
Gene Sequence

>MsaT005831.1

ATGCTTGATAATGTGGACAATATTATCGACTCAACTTGGAGACTATGTGCTCTTGTAGGTGGTTGGGTTTCTGGTTTAATTTCAAAACCTTACACACAAGTGGTTGGCTCTGCATTTGATGGTTCTATTTCTAGGTTGGGCAACGAAAGGGAAAATAGTTATCTAGATTACATGGATCAGTGTATATATATTAGTTCGTCGGACGATGAGTTGGAGGAGATTGTAGATCCTGGGAGGATTCTTCCAAGATGGGCTGCTTCTGAAAGGAATTCAGATTCAAGAAGGGCAAAAAGTTCAAACGCGAGCTCGTCTAACGTTTTTAATCATTCACAAGTTAAGCCCAATAATCAACCTGGTCCGAGCAATGGAAGCACAAGTCAGCATCAGACAGTAAATTCCCGAATTTCTAATTCCAATGGTGCCGGTTATGAGAAAATGTCATCTCAACAAGCTTTTAACAGGACCCTTCCACCATCTTTTCAATCATCTGGTACAAGGGCTCTTCCACCTTCGTCATTTGCACCTAATAACAGATTAAATAACTTAAGCAGCAGTCAGCTGCATGATGCATACAAGAATCGTCATCATGGAGTAGGACCTAGCACATCTGGTGAGAAGGGCTTTTTTCGTGACAATTTTGGCAGAGGCAATGATGGAGATCGTTTCACGAATCAGAATGGTGGGATCAGGGCTCTTCCTCCATCTTTGATGCTTGGAAAGGCTATAACTCCACCGTTTGCTACAGGTGATGAAAGGGCTCCTGAAACTGATGAGAGACTAATTTATGAAGCAGCATTACAGGATATCAGTCAACCATTAAAAGAAGCTGATTTACCTGCTGGTATAATGTCTGTACCTCTAATGAGACATCAGAAAATTGCACTGGCTTGGATGCTTCAGAGGGAAAACAGGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGTCTTGGAAAGACAATTTCAACGATTGCTCTCATCCTAATGCAAAGGCAATCACAGATAAAATGGAAAACAGATGATCCACGCAACCATAAAGCTGAAGCCTTGAATTTGGATGATGATGATGAGAATGGTAGTATTGATGTGGAAAAGGAAAAGCTTAAAAATGATGAAGAATCCAATGATGCAAAACCTATTACTGAACCGAGTAGTTCAACACAGGCCCCAGGTAGGAAAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCTAGAGAGCTTGATGAGAAAGTTGGAGATGAAAAGCTTTCTGTTTTGATTTTTCATGGGGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAATATGATGTGGTTCTCACAACATACTCTCTTGTGACTAATGAAGTTCCCAAACAACCGTTAGTCGAGGAGGATGATATTGATGAAAAGGACGGGGAAAAGTTTGGCTTATCCTCCGATTTTTCTGGCAATAAAAAGAGGAAAAAGCTATATAATGGAAGTAAGAAGGGTAAAAAGGTTATTCTAGATGAAGCTCAAACGATAAAGAATCATAGGACTCAGATGGCCAGAGCTTGCTCCAGCCTTAGGGCAAAAAGAAGGTGGTGCTTGTCTGGCACGCCTATTCAGAATACCATTGATGATTTATATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTGTATAAATCATTCTACAATACAATAAAAGTCCCAATATCCAGAAATTTATTCAAGGTTACAAAAACTTCAAGCAGAACTTTGCTTGATGGCAAGCCTATAATCACTTTGCCTCCTAAAACAATTAATCTGGAGAAGGTTGATTTCTCCTATGAGGAGCGGGCCTTCTACAAGAAGTTGGAAGCTGATTCACGTTCTCAATTTAAGGCATATGCAGCTGCTGGCACAGTAAATCAAAACTACGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGATCACCCGCTTCTTGTTAAAGAATATAATTCTGATCCTGTTGGGAAAGATTCTGTTGAAATGGCAAAAAAGCTTCCAAAGGAGATGCTGATCAATCTGTTTAATAGTCTGGAAACAACTTCAGCTATATGCTGTGTCTGCAATGATCCACCTGATGACTCTGTTATTTCGATGTGTGGCCATGTCTTCTGTTATCAATGCGTGTCAGAACATTTGACAAGTGATGATAATATGTGCCCTGCAGTTCATTGTAAAGAACAACTTGGGGAAGATCTTGTTTTCTCCAAAGCAACTTTGAGGAGTTGCCTCTGTGACGATCTTGGTGGTAGTAGTTCTAGCAACTCGAGTCTTGTTGATTATTCCCTAGTACAGAACAGTGAGTACAGCTCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAGTTGTAAACTGAAGACTCCTGGCTTACTGAATACCCCCGAAGGCAATAGAGATTCACTGCCTTCTGATGATTCCGATATTGAAGATTTTGATTCAGATGTCAAGGTTACAAAACACACAAGTAAATATTCAGAGTGCACATCTGGAGGACCACTAAAGGCTATAATTTTTTCTCAGTGGACTAGCATGTTGGACTTGGTCGAGACATCAATGGAGCAATCTGGCGTCAAATACAGGAGACTTGATGGTAGGATGACTCTTACTGCGAGGGACAGAGCTGTTAAGGATTTCAATACTGATCCTGAGATTACTGTTATGCTGATGTCACTAAAAGCAGGAAACCTTGGTTTAAATATGGTTGCCATGTCATATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGTCCTGTTACTGTGACACGGATCACCATAAAAGATACAGTTGAAGATAGAATATTGGCTCTACAGGAAGAAAAGAGAAAAATGGTGGCATCTGCATTTGGCGAAGACCATGCTGGCGGTTCTGGAACTCGGCTTACTGTTGATGATCTGAAATATCTTTTCATGGTTTAG

Protein sequence

>MsaT005831.1

MLDNVDNIIDSTWRLCALVGGWVSGLISKPYTQVVGSAFDGSISRLGNERENSYLDYMDQCIYISSSDDELEEIVDPGRILPRWAASERNSDSRRAKSSNASSSNVFNHSQVKPNNQPGPSNGSTSQHQTVNSRISNSNGAGYEKMSSQQAFNRTLPPSFQSSGTRALPPSSFAPNNRLNNLSSSQLHDAYKNRHHGVGPSTSGEKGFFRDNFGRGNDGDRFTNQNGGIRALPPSLMLGKAITPPFATGDERAPETDERLIYEAALQDISQPLKEADLPAGIMSVPLMRHQKIALAWMLQRENRSLHCLGGILADDQGLGKTISTIALILMQRQSQIKWKTDDPRNHKAEALNLDDDDENGSIDVEKEKLKNDEESNDAKPITEPSSSTQAPGRKRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLIFHGGSRTKDPVELAKYDVVLTTYSLVTNEVPKQPLVEEDDIDEKDGEKFGLSSDFSGNKKRKKLYNGSKKGKKVILDEAQTIKNHRTQMARACSSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNLFKVTKTSSRTLLDGKPIITLPPKTINLEKVDFSYEERAFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKEYNSDPVGKDSVEMAKKLPKEMLINLFNSLETTSAICCVCNDPPDDSVISMCGHVFCYQCVSEHLTSDDNMCPAVHCKEQLGEDLVFSKATLRSCLCDDLGGSSSSNSSLVDYSLVQNSEYSSSKIKAVLEVLQSSCKLKTPGLLNTPEGNRDSLPSDDSDIEDFDSDVKVTKHTSKYSECTSGGPLKAIIFSQWTSMLDLVETSMEQSGVKYRRLDGRMTLTARDRAVKDFNTDPEITVMLMSLKAGNLGLNMVAMSYQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGGSGTRLTVDDLKYLFMV*