AlfalfaGEDB | MsaG005843

M. sativa ssp. caerulea / MsaG005843

KEGG: K09260
GO: -
PFAM: PF00319.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005843	RHN82688.1	72.487	189	48	2	1	187	1	187	9.43e-91	274

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005843	tr\|A0A396K4F7\|A0A396K4F7_MEDTR	72.487	189	48	2	1	187	1	187	4.51e-91	274

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005843	TF	MADS-M-type

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000030	MsaG005843	0.823847	1.964370e-53	4.788601e-51
MsaG000045	MsaG005843	0.828919	1.232389e-54	3.458077e-52
MsaG000062	MsaG005843	0.815599	1.474541e-51	2.894000e-49
MsaG000083	MsaG005843	0.858225	1.861565e-62	1.353681e-59
MsaG000113	MsaG005843	0.844893	1.068363e-58	4.879016e-56
MsaG000127	MsaG005843	0.801523	1.450178e-48	2.029340e-46
MsaG000128	MsaG005843	0.814332	2.808380e-51	5.338278e-49
MsaG000151	MsaG005843	0.884850	2.898908e-71	6.591021e-68
MsaG000153	MsaG005843	0.921316	1.078688e-87	2.238366e-83
MsaG000163	MsaG005843	0.805570	2.119092e-49	3.255412e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005843	MtrunA17_Chr1g0212471	72.487	189	48	2	1	187	1	187	8.68e-95	274
MsaG005843	MtrunA17_Chr4g0022641	56.481	216	80	5	1	206	1	212	7.86e-77	236
MsaG005843	MtrunA17_Chr4g0059631	50.000	226	89	4	1	206	1	222	1.15e-64	200
MsaG005843	MtrunA17_Chr2g0303981	43.299	194	95	4	3	193	5	186	3.49e-47	154
MsaG005843	MtrunA17_Chr6g0457851	35.849	159	99	2	1	157	11	168	2.27e-32	119
MsaG005843	MtrunA17_Chr1g0212151	37.736	159	96	2	1	157	1	158	3.79e-32	119
MsaG005843	MtrunA17_Chr6g0449851	35.465	172	108	2	1	170	1	171	3.42e-31	115
MsaG005843	MtrunA17_Chr6g0449861	31.111	180	121	2	1	178	9	187	2.11e-28	109
MsaG005843	MtrunA17_Chr3g0107381	25.373	201	120	7	1	189	1	183	1.08e-12	64.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005843	AT5G55690.1	33.557	149	75	5	1	141	1	133	2.57e-14	70.5
MsaG005843	AT5G55690.2	33.557	149	75	5	1	141	1	133	2.57e-14	70.5

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Find 31 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ACCTCAAATGCAACAACACA+TGG	0.539597	1:+85812622	MsaT005843.1:CDS
ATAATGCGGGACCAATAACA+TGG	0.644832	1:+85812267	MsaT005843.1:CDS
ATCATGTGTTTAAATCAAGT+TGG	0.487349	1:-85812709	None:intergenic
ATGCTATGAACGACACTAAG+TGG	0.542543	1:-85812599	None:intergenic
ATGGATATGACTAATCATGC+CGG	0.642387	1:+85812662	MsaT005843.1:CDS
ATTAAATCTGGATGCCAAGT+TGG	0.464493	1:-85812449	None:intergenic
CTCCAGTCTTGTTAGTGTAT+TGG	0.305175	1:-85812196	None:intergenic
CTTGGGTGTTTCAATCACTT+TGG	0.465321	1:-85812333	None:intergenic
GATGATAGCTTTATGCACTT+TGG	0.469421	1:-85812414	None:intergenic
GATGATGGTGGTAATAATGC+GGG	0.602556	1:+85812254	MsaT005843.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr1	gene	85812098	85812730	85812098	ID=MsaG005843
Chr1	mRNA	85812098	85812730	85812098	ID=MsaT005843.1;Parent=MsaG005843
Chr1	exon	85812098	85812730	85812098	ID=MsaT005843.1.exon1;Parent=MsaT005843.1
Chr1	CDS	85812098	85812730	85812098	ID=cds.MsaT005843.1;Parent=MsaT005843.1

Gene Sequence

>MsaT005843.1

ATGGGTCGGGCGAAAATAACTATGAAATACATCAAAAATAAGAAAAATCGCAAAAATACTTTCAAGCAAAGGAAAAATGGACTCATAAAGAAAATTTCCCAATACACTAACAAGACTGGAGCAAAAGCTTGCTTGATTGTGTATGATGATGATGATGATGATGGTGGTAATAATGCGGGACCAATAACATGGCCAGAAGACCATACAATTGTAAACTCTATGCTTCAAGAGTTTACCAAAGTGATTGAAACACCCAAGATATTTGATGTCAACGACTACTTTGAAAATAAGAAAAAAATGGTTGAAACTGAGATTACCAAAGTGCATAAAGCTATCATCGATATCATGTATCCAACTTGGCATCCAGATTTAATTAAGATGGAAGAGAGTGAACTCAAAGACTTGATTGCTGTTATAAATGCAAAGGTAGATGCTTGTAATCTCAAAATTAACATGTTGAAAAGTGAGATGGTGAAAGAGAATGTTGTTTTGAATCCAAGCCCACTTAGTGTCGTTCATAGCATACCTCAAATGCAACAACACATGGATGATATTAGTGAGACGATGGATATGACTAATCATGCCGGTTTGCCTCATAATTCATCAACAAACCAACTTGATTTAAACACATGA

Protein sequence

>MsaT005843.1

MGRAKITMKYIKNKKNRKNTFKQRKNGLIKKISQYTNKTGAKACLIVYDDDDDDGGNNAGPITWPEDHTIVNSMLQEFTKVIETPKIFDVNDYFENKKKMVETEITKVHKAIIDIMYPTWHPDLIKMEESELKDLIAVINAKVDACNLKINMLKSEMVKENVVLNPSPLSVVHSIPQMQQHMDDISETMDMTNHAGLPHNSSTNQLDLNT*