AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG005969


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005969 MtrunA17_Chr2g0276781 93.769 674 21 4 1 656 1 671 0.0 1282
MsaG005969 MtrunA17_Chr8g0346711 48.718 663 255 18 14 624 20 649 0.0 553
MsaG005969 MtrunA17_Chr4g0009751 50.549 637 256 18 4 599 3 621 0.0 531
MsaG005969 MtrunA17_Chr8g0385791 57.014 442 171 6 7 439 43 474 2.26e-161 484
MsaG005969 MtrunA17_Chr8g0385791 41.489 188 86 2 468 631 622 809 2.24e-35 143
MsaG005969 MtrunA17_Chr7g0239061 62.097 372 126 7 18 382 9 372 4.23e-150 450
MsaG005969 MtrunA17_Chr7g0239061 41.714 175 89 4 459 621 485 658 2.24e-33 136
MsaG005969 MtrunA17_Chr2g0285461 50.136 369 171 7 19 378 19 383 3.78e-103 334
MsaG005969 MtrunA17_Chr2g0285461 31.405 121 81 2 501 620 744 863 6.42e-14 75.5
MsaG005969 MtrunA17_Chr8g0376771 49.728 368 173 6 19 378 19 382 4.12e-102 332
MsaG005969 MtrunA17_Chr8g0376771 31.293 147 92 5 478 620 728 869 1.05e-13 74.7
MsaG005969 MtrunA17_Chr3g0109391 50.287 348 160 7 20 358 23 366 1.10e-100 326
MsaG005969 MtrunA17_Chr3g0109391 35.135 111 69 3 512 620 702 811 8.32e-15 78.2
MsaG005969 MtrunA17_Chr5g0433301 49.157 356 164 7 14 358 15 364 5.34e-100 324
MsaG005969 MtrunA17_Chr5g0433301 35.135 111 68 3 513 620 694 803 4.33e-14 75.9
MsaG005969 MtrunA17_Chr4g0029671 44.772 373 185 6 21 376 52 420 3.31e-99 321
MsaG005969 MtrunA17_Chr4g0029671 41.146 192 68 5 462 653 635 781 1.30e-31 131
MsaG005969 MtrunA17_Chr2g0326281 45.170 383 174 8 21 372 54 431 1.43e-97 317
MsaG005969 MtrunA17_Chr2g0326281 46.212 132 67 2 522 653 685 812 3.18e-28 120
MsaG005969 MtrunA17_Chr1g0156321 48.680 341 165 5 19 352 39 376 1.03e-93 308
MsaG005969 MtrunA17_Chr1g0156321 48.387 93 44 3 531 621 753 843 5.33e-18 88.6
MsaG005969 MtrunA17_Chr4g0046371 44.327 379 175 8 23 379 38 402 1.56e-92 301
MsaG005969 MtrunA17_Chr4g0070181 49.422 346 162 7 19 356 19 359 1.03e-90 305
MsaG005969 MtrunA17_Chr4g0070181 37.580 157 83 6 475 621 932 1083 7.42e-19 91.7
MsaG005969 MtrunA17_Chr2g0282961 44.110 365 179 6 23 372 53 407 1.60e-89 291
MsaG005969 MtrunA17_Chr2g0301251 48.555 346 165 7 19 356 19 359 9.52e-89 299
MsaG005969 MtrunA17_Chr2g0301251 43.299 97 53 2 526 621 980 1075 1.18e-18 90.9
MsaG005969 MtrunA17_Chr8g0389081 47.293 351 164 8 19 356 28 370 7.72e-86 291
MsaG005969 MtrunA17_Chr8g0389081 45.000 100 53 2 523 621 976 1074 4.90e-20 95.1
MsaG005969 MtrunA17_Chr1g0181211 28.338 674 381 19 23 611 27 683 1.04e-55 201
MsaG005969 MtrunA17_Chr2g0326761 36.176 387 183 12 19 356 7 378 2.30e-54 197
MsaG005969 MtrunA17_Chr4g0028971 34.152 407 205 11 23 376 12 408 1.85e-50 186
MsaG005969 MtrunA17_Chr3g0115271 34.518 394 209 11 19 372 15 399 3.18e-50 184
MsaG005969 MtrunA17_Chr1g0199681 32.603 411 215 10 2 364 73 469 8.15e-50 184
MsaG005969 MtrunA17_Chr7g0264171 31.308 428 227 13 15 385 23 440 1.32e-46 174
MsaG005969 MtrunA17_Chr8g0356211 41.558 231 120 6 133 356 2 224 3.88e-45 163
MsaG005969 MtrunA17_Chr5g0424931 31.088 386 212 10 23 372 19 386 2.21e-41 158
MsaG005969 MtrunA17_Chr5g0417281 32.172 373 204 13 22 373 10 354 8.89e-41 156
MsaG005969 MtrunA17_Chr7g0264161 32.803 314 185 10 32 332 1 301 1.13e-36 139
MsaG005969 MtrunA17_Chr1g0178011 31.214 346 216 10 23 359 12 344 2.91e-36 142
MsaG005969 MtrunA17_Chr2g0277461 30.814 344 219 8 23 360 13 343 8.51e-35 137
MsaG005969 MtrunA17_Chr5g0436761 29.620 368 217 13 22 370 11 355 1.79e-32 130
MsaG005969 MtrunA17_Chr5g0417211 30.422 332 196 13 23 340 12 322 1.13e-31 127
MsaG005969 MtrunA17_Chr5g0424801 27.979 386 228 13 23 384 12 371 7.90e-31 124
MsaG005969 MtrunA17_Chr5g0425261 28.238 386 227 13 23 384 12 371 1.54e-30 124
MsaG005969 MtrunA17_Chr2g0289221 31.003 329 181 14 23 332 20 321 3.79e-29 119
MsaG005969 MtrunA17_Chr5g0424741 26.302 384 231 13 23 366 12 383 1.66e-27 117
MsaG005969 MtrunA17_Chr2g0277531 27.628 333 190 13 20 332 17 318 7.96e-27 111
MsaG005969 MtrunA17_Chr5g0425661 32.995 197 121 5 23 216 37 225 9.97e-25 103
MsaG005969 MtrunA17_Chr1g0156301 41.758 91 37 2 531 621 176 250 1.39e-14 74.3
MsaG005969 MtrunA17_Chr1g0183251 33.333 123 57 3 527 624 138 260 6.37e-13 69.7
MsaG005969 MtrunA17_Chr1g0193861 32.039 103 56 2 523 611 66 168 3.42e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG005969 AT1G59750.4 68.006 672 172 11 2 650 3 654 0.0 877
MsaG005969 AT1G59750.2 67.905 673 173 11 2 650 3 656 0.0 875
MsaG005969 AT1G59750.1 67.604 676 173 11 2 650 3 659 0.0 874
MsaG005969 AT1G59750.3 67.604 676 173 11 2 650 3 659 0.0 874
MsaG005969 AT2G46530.1 51.373 619 244 15 13 623 11 580 0.0 560
MsaG005969 AT2G46530.3 51.118 626 249 15 6 623 25 601 0.0 560
MsaG005969 AT3G61830.1 50.781 640 237 19 10 633 12 589 0.0 553
MsaG005969 AT4G23980.2 50.237 633 268 17 13 622 2 610 8.81e-180 525
MsaG005969 AT4G23980.1 50.000 634 270 17 13 622 2 612 1.90e-179 524
MsaG005969 AT3G61830.2 50.000 600 222 19 50 633 1 538 1.61e-170 498
MsaG005969 AT5G62000.2 63.409 399 135 5 7 397 45 440 3.10e-169 506
MsaG005969 AT5G62000.2 36.842 228 103 7 426 622 606 823 7.18e-36 145
MsaG005969 AT5G62000.5 63.409 399 135 5 7 397 45 440 3.10e-169 506
MsaG005969 AT5G62000.5 36.842 228 103 7 426 622 606 823 7.18e-36 145
MsaG005969 AT5G62000.3 63.409 399 135 5 7 397 45 440 3.10e-169 506
MsaG005969 AT5G62000.3 36.842 228 103 7 426 622 606 823 7.18e-36 145
MsaG005969 AT5G62000.1 63.409 399 135 5 7 397 45 440 3.10e-169 506
MsaG005969 AT5G62000.1 36.842 228 103 7 426 622 606 823 7.18e-36 145
MsaG005969 AT5G62000.4 63.409 399 135 5 7 397 45 440 3.53e-169 505
MsaG005969 AT5G62000.4 36.842 228 103 7 426 622 606 823 7.29e-36 145
MsaG005969 AT1G35540.1 41.440 625 307 14 20 628 24 605 4.09e-148 443
MsaG005969 AT1G34410.1 41.158 622 294 17 20 618 24 596 5.48e-143 430
MsaG005969 AT2G46530.2 47.212 538 226 15 95 623 5 493 2.53e-141 422
MsaG005969 AT1G35520.1 40.032 632 306 16 2 611 9 589 4.87e-139 419
MsaG005969 AT1G34310.1 41.100 618 286 18 20 611 24 589 1.37e-138 418
MsaG005969 AT1G34390.1 40.946 613 294 16 20 612 24 588 1.18e-134 408
MsaG005969 AT1G35240.1 49.162 358 168 6 20 372 24 372 1.20e-108 340
MsaG005969 AT1G35240.1 50.980 102 46 2 520 618 482 582 2.85e-26 114
MsaG005969 AT1G34170.1 42.250 400 205 8 16 400 18 406 2.10e-102 322
MsaG005969 AT1G30330.3 50.678 369 169 7 19 378 21 385 7.82e-102 332
MsaG005969 AT1G30330.3 35.593 118 71 4 512 626 774 889 1.44e-14 78.2
MsaG005969 AT1G30330.2 50.678 369 169 7 19 378 21 385 7.82e-102 332
MsaG005969 AT1G30330.2 35.593 118 71 4 512 626 774 889 1.44e-14 78.2
MsaG005969 AT1G30330.1 50.678 369 169 7 19 378 19 383 8.53e-102 332
MsaG005969 AT1G30330.1 35.593 118 71 4 512 626 772 887 1.42e-14 78.2
MsaG005969 AT5G37020.2 50.287 348 160 7 20 358 19 362 1.00e-100 325
MsaG005969 AT5G37020.2 40.260 77 44 2 524 599 697 772 3.68e-11 67.0
MsaG005969 AT5G37020.1 50.287 348 160 7 20 358 19 362 3.01e-100 325
MsaG005969 AT5G37020.1 37.755 98 59 2 524 620 697 793 2.39e-14 77.4
MsaG005969 AT5G60450.2 44.562 377 188 6 19 379 37 408 4.28e-96 312
MsaG005969 AT5G60450.2 57.609 92 39 0 527 618 636 727 1.28e-27 119
MsaG005969 AT5G60450.1 44.681 376 187 6 20 379 62 432 6.28e-96 313
MsaG005969 AT5G60450.1 57.609 92 39 0 527 618 660 751 1.41e-27 119
MsaG005969 AT1G19850.2 46.761 355 178 6 6 352 26 377 1.54e-93 308
MsaG005969 AT1G19850.2 38.760 129 71 3 500 621 744 871 2.46e-17 87.0
MsaG005969 AT1G19850.1 46.761 355 178 6 6 352 37 388 2.17e-93 308
MsaG005969 AT1G19850.1 38.760 129 71 3 500 621 755 882 2.68e-17 86.7
MsaG005969 AT1G34170.2 39.750 400 189 8 16 400 18 380 1.24e-89 287
MsaG005969 AT1G34170.3 39.750 400 189 8 16 400 18 380 7.94e-89 287
MsaG005969 AT1G34170.3 42.276 123 63 2 508 623 402 523 1.23e-23 105
MsaG005969 AT5G20730.2 46.631 371 185 7 20 382 21 386 1.89e-87 296
MsaG005969 AT5G20730.2 42.268 97 54 2 526 621 1031 1126 2.17e-18 90.5
MsaG005969 AT2G33860.1 43.562 365 181 6 23 372 54 408 2.07e-86 283
MsaG005969 AT5G20730.3 46.505 372 185 8 20 382 21 387 6.67e-86 292
MsaG005969 AT5G20730.3 42.268 97 54 2 526 621 1032 1127 2.26e-18 90.5
MsaG005969 AT5G20730.1 46.505 372 185 8 20 382 21 387 8.33e-86 292
MsaG005969 AT5G20730.1 40.909 110 59 3 526 634 1032 1136 2.21e-18 90.5
MsaG005969 AT1G19220.1 45.822 371 188 7 20 382 20 385 5.18e-85 289
MsaG005969 AT1G19220.1 44.330 97 52 2 526 621 952 1047 1.38e-19 94.4
MsaG005969 AT5G37020.3 49.446 271 125 6 96 358 1 267 9.40e-68 235
MsaG005969 AT5G37020.3 37.755 98 59 2 524 620 602 698 1.99e-14 77.4
MsaG005969 AT2G33860.2 45.455 253 130 3 125 372 2 251 1.26e-58 204
MsaG005969 AT1G43950.1 44.643 224 110 4 4 222 8 222 9.97e-58 194
MsaG005969 AT2G28350.2 33.415 410 207 9 19 374 6 403 9.31e-53 193
MsaG005969 AT2G28350.1 33.415 410 207 9 19 374 6 403 9.56e-53 193
MsaG005969 AT4G30080.1 34.527 391 201 9 14 359 10 390 1.05e-52 193
MsaG005969 AT1G77850.1 30.334 389 217 10 6 352 1 377 1.03e-41 160
MsaG005969 AT1G77850.2 30.334 389 217 10 6 352 1 377 1.18e-41 160
MsaG005969 AT3G17600.1 44.578 83 43 2 535 615 75 156 6.31e-14 70.5
MsaG005969 AT2G46990.1 42.683 82 40 2 536 611 88 168 1.17e-13 70.1
MsaG005969 AT3G62100.1 41.463 82 41 2 536 611 86 166 6.95e-13 67.8
MsaG005969 AT5G25890.1 29.213 89 62 1 535 623 83 170 5.71e-11 62.4

Find 180 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCATATACTTCATCTGTTTC+AGG 0.134407 2:-139981 None:intergenic
CAGCATGCATCTTGGTGTTT+TGG 0.186948 2:+145284 MsaT005969.1:CDS
CAGCTCACACACCTTCTTTC+AGG 0.198099 2:-145740 None:intergenic
GCAACTAGCTTTCTTGGTTT+TGG 0.225356 2:+146650 MsaT005969.1:CDS
AGCATCCTTACATCGGTTTC+AGG 0.238212 2:-140020 None:intergenic
TCTACTGCAACTAGCTTTCT+TGG 0.242410 2:+146644 MsaT005969.1:CDS
TGGGTTGGCTGGGAGTTTGC+TGG 0.246865 2:-146389 None:intergenic
TCTTGTTTCGTTGGGTTGGC+TGG 0.249406 2:-146400 None:intergenic
TTAAGTGCTACAGGTGAAAA+AGG 0.249676 2:-146737 None:intergenic
TGAGGATCTGCTTAGGAAAT+TGG 0.255784 2:+148474 MsaT005969.1:CDS
TTCCTGACTGAGTAATTTAC+AGG 0.259941 2:+144958 MsaT005969.1:intron
CGTCGCCAGCCACTAACTTT+TGG 0.279726 2:-145031 None:intergenic
GGAAATGGCTGTAGGCTCTT+TGG 0.292769 2:+146788 MsaT005969.1:CDS
TTCTGAATGGCGATCGTTAA+AGG 0.304620 2:+145891 MsaT005969.1:CDS
TCAGACCGATTAACATTTGA+TGG 0.307170 2:-146931 None:intergenic
GAAATGGCTGTAGGCTCTTT+GGG 0.307324 2:+146789 MsaT005969.1:CDS
TAGAGTTTCTCCATGGGAAT+TGG 0.341674 2:+146346 MsaT005969.1:CDS
AAGAAGCTTTCACCGAAAAT+AGG 0.359026 2:+148772 MsaT005969.1:CDS
AAGATAATAAATCATCTGTC+TGG 0.362077 2:+145863 MsaT005969.1:CDS
GCGACGCATTTATATTCTTA+AGG 0.364246 2:+145048 MsaT005969.1:CDS
AGTGGTCAATATTCATCTTC+GGG 0.365481 2:+139829 MsaT005969.1:CDS
CCTGTAGCACTTAAAGAATC+TGG 0.366455 2:+146746 MsaT005969.1:CDS
GCTCGAGGCATCTATGAATC+AGG 0.366491 2:+139754 MsaT005969.1:intron
AGTGGTTAGCAAGTGGCGCC+TGG 0.367329 2:-144986 None:intergenic
TCCCATGGAGAAACTCTATC+TGG 0.379411 2:-146341 None:intergenic
TTGTCAGTTCCAAAAGTTAG+TGG 0.391821 2:+145022 MsaT005969.1:CDS
CTTGTTTCGTTGGGTTGGCT+GGG 0.393670 2:-146399 None:intergenic
GCCGTGATCTCTTGTTTCGT+TGG 0.393836 2:-146409 None:intergenic
ACTGTACACCTTGGAGGTTC+AGG 0.402087 2:-140234 None:intergenic
AAGTGGTCAATATTCATCTT+CGG 0.406745 2:+139828 MsaT005969.1:CDS
CCGTGATCTCTTGTTTCGTT+GGG 0.408027 2:-146408 None:intergenic
GGTTCAGGCAGAGGATCGTC+TGG 0.408864 2:-140219 None:intergenic
AAACAACGTTCCGGTGGAAA+TGG 0.411637 2:-145322 None:intergenic
AGAAGGTAAACCAAGCAAAC+TGG 0.417654 2:+148810 MsaT005969.1:CDS
CCATGTTGAGGGTCGCGATA+AGG 0.418966 2:-146590 None:intergenic
CTGAACCATCAAATGTTAAT+CGG 0.420775 2:+146926 MsaT005969.1:CDS
CTGCAAACTGCTCCTTTGTC+AGG 0.421100 2:+146848 MsaT005969.1:CDS
CGGTCATCTATTGTGGGGCC+TGG 0.422834 2:+148862 MsaT005969.1:CDS
TACATTGACTTGTTAGAAGC+AGG 0.423055 2:-146683 None:intergenic
CCAGATTCTTTAAGTGCTAC+AGG 0.424964 2:-146746 None:intergenic
AAGAGACAAGGCACTGGAAA+TGG 0.428342 2:+146773 MsaT005969.1:CDS
GAAAGCTTCTTCACCTCCTC+TGG 0.429223 2:-148760 None:intergenic
AATGTATTGGTCTAGTAGAT+TGG 0.436725 2:+146700 MsaT005969.1:CDS
CTGAATCTTGGTGATGGATA+GGG 0.438041 2:-146620 None:intergenic
CTCTAAAATATTGTGTAAAG+TGG 0.440981 2:+139811 MsaT005969.1:CDS
GCAGCCACCGTGGCAAGAAC+TGG 0.442859 2:+140467 MsaT005969.1:CDS
CGAAATCACAAACTTTCTGT+TGG 0.445985 2:+145680 MsaT005969.1:CDS
CATTTGATGGTTCAGAATGT+TGG 0.446500 2:-146918 None:intergenic
GAAGAGATGTTTGACATTGA+GGG 0.446939 2:+148496 MsaT005969.1:CDS
GGAGAGCTCGAGTTGGAGTC+AGG 0.447005 2:+145211 MsaT005969.1:intron
ACAATAGATGACCGGTCCTC+AGG 0.452615 2:-148853 None:intergenic
ATCATGCCTGCGGTCTCCTC+AGG 0.453007 2:+146984 MsaT005969.1:CDS
CCCTCAAGGTCACATGGAAC+AGG 0.455282 2:+139462 MsaT005969.1:CDS
GTAATGTATCTCAGGTTCAA+TGG 0.455705 2:+146294 MsaT005969.1:intron
GAGGACCGGTCATCTATTGT+GGG 0.456037 2:+148856 MsaT005969.1:CDS
GGGAAAGGTGGAGCGTCAAC+TGG 0.457239 2:-146569 None:intergenic
AAGATGATATGATGATGGTT+GGG 0.459654 2:+148569 MsaT005969.1:CDS
GAAATCACAAACTTTCTGTT+GGG 0.463689 2:+145681 MsaT005969.1:CDS
GCTTCGGAATCCAGTTTGCT+TGG 0.465346 2:-148820 None:intergenic
AGGCGCCACTTGCTAACCAC+TGG 0.466079 2:+144988 MsaT005969.1:CDS
TTGTCACTCTTCCTCGTGAA+GGG 0.467505 2:+139422 MsaT005969.1:CDS
CTCAGGATTGACAACTGCTT+CGG 0.469365 2:-148836 None:intergenic
CATGTTGAGGGTCGCGATAA+GGG 0.471170 2:-146589 None:intergenic
GGTTTACCTTCTTCATTGCT+CGG 0.472689 2:-148799 None:intergenic
GAATTGTGGCATGCCTGTGC+TGG 0.473261 2:+139394 MsaT005969.1:CDS
CCTGTTCCATGTGACCTTGA+GGG 0.476786 2:-139462 None:intergenic
TTGGGATGCGATTCAAAATG+AGG 0.477303 2:+145699 MsaT005969.1:CDS
CGATTCAAAATGAGGTTTGA+GGG 0.479357 2:+145707 MsaT005969.1:CDS
GGAAGAGATGTTTGACATTG+AGG 0.479569 2:+148495 MsaT005969.1:CDS
TAATGTATCTCAGGTTCAAT+GGG 0.483572 2:+146295 MsaT005969.1:intron
TGAGGACCGGTCATCTATTG+TGG 0.485382 2:+148855 MsaT005969.1:CDS
GATCTCTTGTTTCGTTGGGT+TGG 0.487252 2:-146404 None:intergenic
TACTTACAATAAACTCTGAC+CGG 0.489576 2:-145637 None:intergenic
GAAGAATCGGTCATTGTTGA+AGG 0.493223 2:-146443 None:intergenic
TAGGGGTCTCTTCCATGTTG+AGG 0.493687 2:-146602 None:intergenic
GCTGAATCTTGGTGATGGAT+AGG 0.496211 2:-146621 None:intergenic
AGGGGTCTCTTCCATGTTGA+GGG 0.496601 2:-146601 None:intergenic
AGTGACAAGGGGTCCAGCAC+AGG 0.502780 2:-139407 None:intergenic
CTTCTAACAAGTCAATGTAT+TGG 0.505095 2:+146687 MsaT005969.1:CDS
GTTGCAGTAGAGCTGAATCT+TGG 0.505751 2:-146632 None:intergenic
CAGTTCCAAAAGTTAGTGGC+TGG 0.506013 2:+145026 MsaT005969.1:CDS
AGGTTCAGTGGTACAATTGT+GGG 0.507107 2:+145835 MsaT005969.1:intron
CCAGGTTCACATGCAAGGTA+TGG 0.509483 2:+148411 MsaT005969.1:intron
CACCTTGGAGGTTCAGGCAG+AGG 0.511883 2:-140228 None:intergenic
GTTACCTTGCAGAGAAGAAT+CGG 0.512172 2:-146456 None:intergenic
GCGATTCAAAATGAGGTTTG+AGG 0.512793 2:+145706 MsaT005969.1:CDS
ATGGATATGAGGATCTGCTT+AGG 0.512809 2:+148467 MsaT005969.1:CDS
GTGGTTAGCAAGTGGCGCCT+GGG 0.519747 2:-144985 None:intergenic
TCAGCTGTTACAAGCCGTGC+AGG 0.520745 2:+139113 MsaT005969.1:CDS
AGATGATTGTCTTCCACCAC+TGG 0.522916 2:+140332 MsaT005969.1:CDS
TGCAAGGTATGGCTGTTGGA+AGG 0.523418 2:+148422 MsaT005969.1:CDS
GAAGATGATATGATGATGGT+TGG 0.523906 2:+148568 MsaT005969.1:CDS
GTCATTGTTGAAGGTAGAAT+AGG 0.525173 2:-146434 None:intergenic
CTGTCTGGGCTGATTCTGAA+TGG 0.532253 2:+145878 MsaT005969.1:CDS
GAATGAACTGTACACCTTGG+AGG 0.532998 2:-140240 None:intergenic
TCTAGTCACAGCATGCATCT+TGG 0.534965 2:+145276 MsaT005969.1:CDS
CACATGCAAGGTATGGCTGT+TGG 0.535621 2:+148418 MsaT005969.1:CDS
AACTGCTCCTTTGTCAGGAA+GGG 0.537873 2:+146853 MsaT005969.1:CDS
ATGCTTTATACAAGGAATTG+TGG 0.544099 2:+139380 MsaT005969.1:CDS
ACCTGTTCCATGTGACCTTG+AGG 0.544594 2:-139463 None:intergenic
TGACTAGATATGACAGAAGA+TGG 0.546076 2:-145261 None:intergenic
AGATAATAAATCATCTGTCT+GGG 0.549007 2:+145864 MsaT005969.1:CDS
AAACACAGAAAACAACGTTC+CGG 0.549480 2:-145331 None:intergenic
TTGTTCCAGGTTCACATGCA+AGG 0.550862 2:+148406 MsaT005969.1:intron
CTTGTCACTCTTCCTCGTGA+AGG 0.552035 2:+139421 MsaT005969.1:CDS
GGAGAGAAGAGACAAGGCAC+TGG 0.552498 2:+146767 MsaT005969.1:CDS
GACATTGAGGGCGAGCTCTG+TGG 0.553894 2:+148508 MsaT005969.1:CDS
AACTAATGATGCTTTATACA+AGG 0.555709 2:+139372 MsaT005969.1:CDS
GTTGGCTGGGAGTTTGCTGG+AGG 0.557911 2:-146386 None:intergenic
AAACTGCTCCTTTGTCAGGA+AGG 0.559088 2:+146852 MsaT005969.1:CDS
CAGGTTCAGTGGTACAATTG+TGG 0.559846 2:+145834 MsaT005969.1:intron
GTCCAGATAGAGTTTCTCCA+TGG 0.563529 2:+146339 MsaT005969.1:CDS
TGAATCTTGGTGATGGATAG+GGG 0.566632 2:-146619 None:intergenic
ATCAAATAATCTTACAGCCA+CGG 0.567519 2:-148598 None:intergenic
GTGACTCCTGAGGAGACCGC+AGG 0.572855 2:-146990 None:intergenic
GCATCTCATGCCATTTCCAC+CGG 0.574440 2:+145312 MsaT005969.1:CDS
GTGATGAAGTACCTGAAAGA+AGG 0.575293 2:+145729 MsaT005969.1:CDS
AGATGATATGATGATGGTTG+GGG 0.575551 2:+148570 MsaT005969.1:CDS
ATAAAGTTGCTAACCAGTGG+TGG 0.576718 2:-140345 None:intergenic
CCTTATCGCGACCCTCAACA+TGG 0.577301 2:+146590 MsaT005969.1:CDS
ATCCTCTGCCTGAACCTCCA+AGG 0.580105 2:+140226 MsaT005969.1:CDS
ACATTGACTTGTTAGAAGCA+GGG 0.583442 2:-146682 None:intergenic
GGCGCCACTTGCTAACCACT+GGG 0.585156 2:+144989 MsaT005969.1:CDS
CAGTTGTCAATCCTGAGGAC+CGG 0.585541 2:+148842 MsaT005969.1:CDS
CTCGAGGCATCTATGAATCA+GGG 0.588536 2:+139755 MsaT005969.1:CDS
GGTCTTCCGAGCAATGAAGA+AGG 0.588889 2:+148793 MsaT005969.1:CDS
GCTTCTGACACTAGCACTCA+CGG 0.590110 2:+140282 MsaT005969.1:CDS
CTGGTTGCAACTGATTTGCA+TGG 0.590503 2:+140486 MsaT005969.1:CDS
CCCAACGAAACAAGAGATCA+CGG 0.593547 2:+146408 MsaT005969.1:CDS
TGTCACTCTTCCTCGTGAAG+GGG 0.594234 2:+139423 MsaT005969.1:CDS
CAATGAAGATGATATGATGA+TGG 0.595334 2:+148564 MsaT005969.1:CDS
CCCGCTGAATACAGGTTCAG+TGG 0.595738 2:+145823 MsaT005969.1:intron
CACAGAAAACAACGTTCCGG+TGG 0.598297 2:-145328 None:intergenic
TGAAAATGGAGAGCTCGAGT+TGG 0.599723 2:+145204 MsaT005969.1:intron
ACCTGGGAGTATTAGCAACC+AGG 0.602243 2:-148880 None:intergenic
TGAGGGTCGCGATAAGGGAA+AGG 0.605416 2:-146584 None:intergenic
TTAGAGGGCAGATTAAAGGA+AGG 0.605910 2:-139794 None:intergenic
TTACTTCCCTCAAGGTCACA+TGG 0.605985 2:+139456 MsaT005969.1:CDS
TCCACCCAGTGGTTAGCAAG+TGG 0.606265 2:-144993 None:intergenic
TCAGCATCACAACTTACTGA+AGG 0.608499 2:-146958 None:intergenic
GAAATGAAACCGAACCTGCA+CGG 0.608673 2:-139127 None:intergenic
ATTGTTGAAGGTAGAATAGG+AGG 0.609621 2:-146431 None:intergenic
ACAAGTGGCTCCAATTCCCA+TGG 0.609636 2:-146356 None:intergenic
AAGGCACTGGAAATGGCTGT+AGG 0.609978 2:+146780 MsaT005969.1:CDS
CAGGCCCCACAATAGATGAC+CGG 0.614895 2:-148861 None:intergenic
AATGAATGAACTGTACACCT+TGG 0.617416 2:-140243 None:intergenic
TTCACGAGGAAGAGTGACAA+GGG 0.618268 2:-139419 None:intergenic
GTAGAGCTGAATCTTGGTGA+TGG 0.621492 2:-146626 None:intergenic
GCAAGGTATGGCTGTTGGAA+GGG 0.622306 2:+148423 MsaT005969.1:CDS
AAGTATTAACAAGTATCTTG+AGG 0.629801 2:+145655 MsaT005969.1:CDS
GTTCAGGCAGAGGATCGTCT+GGG 0.636939 2:-140218 None:intergenic
TGTCTGCTTTGTGACTCCTG+AGG 0.636995 2:-147000 None:intergenic
TCCAGATAGAGTTTCTCCAT+GGG 0.639065 2:+146340 MsaT005969.1:CDS
AGAGTGTATTACTTCCCTCA+AGG 0.640899 2:+139448 MsaT005969.1:CDS
CTTCACGAGGAAGAGTGACA+AGG 0.643168 2:-139420 None:intergenic
GGGTCGCGATAAGGGAAAGG+TGG 0.643453 2:-146581 None:intergenic
GTTGCAACCAGTTCTTGCCA+CGG 0.644013 2:-140474 None:intergenic
ACAAATAAGAAGCTGCACAA+AGG 0.645385 2:+147020 MsaT005969.1:CDS
CTTGTTGGTTTAGCAAAGTG+AGG 0.646960 2:+140188 MsaT005969.1:intron
CGAAGCAGTTGTCAATCCTG+AGG 0.652184 2:+148837 MsaT005969.1:CDS
TCTGGACGCAAAATTGATGA+CGG 0.655588 2:-146323 None:intergenic
GAGCTCGAGTTGGAGTCAGG+AGG 0.657237 2:+145214 MsaT005969.1:intron
GAATCTGGAGAGAAGAGACA+AGG 0.663528 2:+146761 MsaT005969.1:CDS
ATGACCGATTCTTCTCTGCA+AGG 0.665319 2:+146452 MsaT005969.1:CDS
TACACTCTCTCCCCTTCACG+AGG 0.668420 2:-139433 None:intergenic
AGGACCGGTCATCTATTGTG+GGG 0.669625 2:+148857 MsaT005969.1:CDS
GCAACCAGTTCTTGCCACGG+TGG 0.672804 2:-140471 None:intergenic
TGATGGTTGGGGATGATCCG+TGG 0.673950 2:+148581 MsaT005969.1:CDS
GCTGGAGGAGTAGATACAAG+TGG 0.679626 2:-146371 None:intergenic
GTTCATCTACACACCAGAGG+AGG 0.686254 2:+148747 MsaT005969.1:CDS
ATGCTGACAAATCATGCCTG+CGG 0.688919 2:+146974 MsaT005969.1:CDS
GGAAATGGCATGAGATGCAG+TGG 0.688967 2:-145307 None:intergenic
CTGATTTGCATGGAAATGAG+TGG 0.690536 2:+140496 MsaT005969.1:CDS
AGTAATTTACAGGACAACCC+AGG 0.694391 2:+144968 MsaT005969.1:intron
GCCACTTGCTAACCACTGGG+TGG 0.705306 2:+144992 MsaT005969.1:CDS
GACAAAGACACTCCACCCAG+TGG 0.718661 2:-145004 None:intergenic
TCACGAGGAAGAGTGACAAG+GGG 0.718761 2:-139418 None:intergenic
ACATGACTCAGCAGCCACCG+TGG 0.724404 2:+140457 MsaT005969.1:CDS
AATGTTCATCTACACACCAG+AGG 0.729044 2:+148744 MsaT005969.1:CDS
TCTGACACTAGCACTCACGG+AGG 0.860330 2:+140285 MsaT005969.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 139095 148891 139095 ID=MsaG005969
Chr2 mRNA 139095 148891 139095 ID=MsaT005969.1;Parent=MsaG005969
Chr2 exon 139095 139134 139095 ID=MsaT005969.1.exon1;Parent=MsaT005969.1
Chr2 CDS 139095 139134 139095 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 139368 139483 139368 ID=MsaT005969.1.exon2;Parent=MsaT005969.1
Chr2 CDS 139368 139483 139368 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 139755 139850 139755 ID=MsaT005969.1.exon3;Parent=MsaT005969.1
Chr2 CDS 139755 139850 139755 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 139975 140031 139975 ID=MsaT005969.1.exon4;Parent=MsaT005969.1
Chr2 CDS 139975 140031 139975 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 140201 140353 140201 ID=MsaT005969.1.exon5;Parent=MsaT005969.1
Chr2 CDS 140201 140353 140201 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 140456 140540 140456 ID=MsaT005969.1.exon6;Parent=MsaT005969.1
Chr2 CDS 140456 140540 140456 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 144970 145069 144970 ID=MsaT005969.1.exon7;Parent=MsaT005969.1
Chr2 CDS 144970 145069 144970 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 145215 145364 145215 ID=MsaT005969.1.exon8;Parent=MsaT005969.1
Chr2 CDS 145215 145364 145215 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 145631 145750 145631 ID=MsaT005969.1.exon9;Parent=MsaT005969.1
Chr2 CDS 145631 145750 145631 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 145837 145912 145837 ID=MsaT005969.1.exon10;Parent=MsaT005969.1
Chr2 CDS 145837 145912 145837 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 146308 146473 146308 ID=MsaT005969.1.exon11;Parent=MsaT005969.1
Chr2 CDS 146308 146473 146308 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 146555 146874 146555 ID=MsaT005969.1.exon12;Parent=MsaT005969.1
Chr2 CDS 146555 146874 146555 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 146913 147041 146913 ID=MsaT005969.1.exon13;Parent=MsaT005969.1
Chr2 CDS 146913 147041 146913 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 148415 148605 148415 ID=MsaT005969.1.exon14;Parent=MsaT005969.1
Chr2 CDS 148415 148605 148415 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2 exon 148720 148891 148720 ID=MsaT005969.1.exon15;Parent=MsaT005969.1
Chr2 CDS 148720 148891 148720 ID=cds.MsaT005969.1;Parent=MsaT005969.1
Gene Sequence

>MsaT005969.1

ATGGCTTCAAATCACATGTCAGCTGTTACAAGCCGTGCAGGGTCAACTAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTGTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCCTCTAAAATATTGTGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTCTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACGGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTTCCACCACTGGACATGACTCAGCAGCCACCGTGGCAAGAACTGGTTGCAACTGATTTGCATGGAAATGAGTGGCATTTTCGACATATTTTTCGCGTAATTTACAGGACAACCCAGGCGCCACTTGCTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAGTTAGTGGCTGGCGACGCATTTATATTCTTAAGAGCTCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTCATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACGTTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAGGCTCGAAATCACAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTTGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCTGAATGGCGATCGTTAAAGGTTCAATGGGATGAACCGTCATCAATTTTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACTCCTCCAGCAAACTCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTATTCTACCTTCAACAATGACCGATTCTTCTCTGCAAGGCATATGGAAATCACCAGTTGACGCTCCACCTTTCCCTTATCGCGACCCTCAACATGGAAGAGACCCCTATCCATCACCAAGATTCAGCTCTACTGCAACTAGCTTTCTTGGTTTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAATGTATTGGTCTAGTAGATTGGAAAACTCTACAGAACCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACTGCTCCTTTGTCAGGAAGGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTTGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGCGAGCTCTGTGGAGCAACAAAAAAATGGCTGGTAGTTTACACTGACAATGAAGATGATATGATGATGGTTGGGGATGATCCGTGGCTTGAATTTTGTAGCGTTGTGAGGAAAATGTTCATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAGGTCTTCCGAGCAATGAAGAAGGTAAACCAAGCAAACTGGATTCCGAAGCAGTTGTCAATCCTGAGGACCGGTCATCTATTGTGGGGCCTGGTTGCTAA

Protein sequence

>MsaT005969.1

MASNHMSAVTSRAGSTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRVIYRTTQAPLANHWVECLCQFQKLVAGDAFIFLRARVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPILPSTMTDSSLQGIWKSPVDAPPFPYRDPQHGRDPYPSPRFSSTATSFLGFGGNSPASNKSMYWSSRLENSTEPFSPVALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTAPLSGRSDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFIYTPEEVKKLSPKIGLPSNEEGKPSKLDSEAVVNPEDRSSIVGPGC*