AlfalfaGEDB | MsaG005969

M. sativa ssp. caerulea / MsaG005969

KEGG: K14486
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009889 GO:0009890 GO:0009892 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048366 GO:0048367 GO:0048519 GO:0048523 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0090693 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005969	XP_003592874.1	93.769	674	21	4	1	656	1	671	0.0	1282

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005969	sp\|Q8L7G0\|ARFA_ARATH	67.604	676	173	11	2	650	3	659	0.0	874

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005969	tr\|G7IL56\|G7IL56_MEDTR	93.769	674	21	4	1	656	1	671	0.0	1282

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005969	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001199	MsaG005969	0.805937	1.775846e-49	2.751781e-47
MsaG001237	MsaG005969	0.808552	4.987751e-50	8.225428e-48
MsaG001672	MsaG005969	0.804132	4.217654e-49	6.266928e-47
MsaG002029	MsaG005969	0.836177	1.992005e-56	6.912306e-54
MsaG002030	MsaG005969	0.811625	1.094196e-50	1.944235e-48
MsaG002273	MsaG005969	0.816083	1.151521e-51	2.287909e-49
MsaG002287	MsaG005969	0.819693	1.777526e-52	3.877582e-50
MsaG002866	MsaG005969	0.840353	1.692479e-57	6.680809e-55
MsaG003389	MsaG005969	0.819955	1.549532e-52	3.404013e-50
MsaG004225	MsaG005969	0.803956	4.587122e-49	6.788056e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005969	MtrunA17_Chr2g0276781	93.769	674	21	4	1	656	1	671	0.0	1282
MsaG005969	MtrunA17_Chr8g0346711	48.718	663	255	18	14	624	20	649	0.0	553
MsaG005969	MtrunA17_Chr4g0009751	50.549	637	256	18	4	599	3	621	0.0	531
MsaG005969	MtrunA17_Chr8g0385791	57.014	442	171	6	7	439	43	474	2.26e-161	484
MsaG005969	MtrunA17_Chr8g0385791	41.489	188	86	2	468	631	622	809	2.24e-35	143
MsaG005969	MtrunA17_Chr7g0239061	62.097	372	126	7	18	382	9	372	4.23e-150	450
MsaG005969	MtrunA17_Chr7g0239061	41.714	175	89	4	459	621	485	658	2.24e-33	136
MsaG005969	MtrunA17_Chr2g0285461	50.136	369	171	7	19	378	19	383	3.78e-103	334
MsaG005969	MtrunA17_Chr2g0285461	31.405	121	81	2	501	620	744	863	6.42e-14	75.5
MsaG005969	MtrunA17_Chr8g0376771	49.728	368	173	6	19	378	19	382	4.12e-102	332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005969	AT1G59750.4	68.006	672	172	11	2	650	3	654	0.0	877
MsaG005969	AT1G59750.2	67.905	673	173	11	2	650	3	656	0.0	875
MsaG005969	AT1G59750.1	67.604	676	173	11	2	650	3	659	0.0	874
MsaG005969	AT1G59750.3	67.604	676	173	11	2	650	3	659	0.0	874
MsaG005969	AT2G46530.1	51.373	619	244	15	13	623	11	580	0.0	560
MsaG005969	AT2G46530.3	51.118	626	249	15	6	623	25	601	0.0	560
MsaG005969	AT3G61830.1	50.781	640	237	19	10	633	12	589	0.0	553
MsaG005969	AT4G23980.2	50.237	633	268	17	13	622	2	610	8.81e-180	525
MsaG005969	AT4G23980.1	50.000	634	270	17	13	622	2	612	1.90e-179	524
MsaG005969	AT3G61830.2	50.000	600	222	19	50	633	1	538	1.61e-170	498

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Find 180 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAACGTTCCGGTGGAAA+TGG	0.411637	2:-145322	None:intergenic
AAACACAGAAAACAACGTTC+CGG	0.549480	2:-145331	None:intergenic
AAACTGCTCCTTTGTCAGGA+AGG	0.559088	2:+146852	MsaT005969.1:CDS
AACTAATGATGCTTTATACA+AGG	0.555709	2:+139372	MsaT005969.1:CDS
AACTGCTCCTTTGTCAGGAA+GGG	0.537873	2:+146853	MsaT005969.1:CDS
AAGAAGCTTTCACCGAAAAT+AGG	0.359026	2:+148772	MsaT005969.1:CDS
AAGAGACAAGGCACTGGAAA+TGG	0.428342	2:+146773	MsaT005969.1:CDS
AAGATAATAAATCATCTGTC+TGG	0.362077	2:+145863	MsaT005969.1:CDS
AAGATGATATGATGATGGTT+GGG	0.459654	2:+148569	MsaT005969.1:CDS
AAGGCACTGGAAATGGCTGT+AGG	0.609978	2:+146780	MsaT005969.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	139095	148891	139095	ID=MsaG005969
Chr2	mRNA	139095	148891	139095	ID=MsaT005969.1;Parent=MsaG005969
Chr2	exon	139095	139134	139095	ID=MsaT005969.1.exon1;Parent=MsaT005969.1
Chr2	CDS	139095	139134	139095	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	139368	139483	139368	ID=MsaT005969.1.exon2;Parent=MsaT005969.1
Chr2	CDS	139368	139483	139368	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	139755	139850	139755	ID=MsaT005969.1.exon3;Parent=MsaT005969.1
Chr2	CDS	139755	139850	139755	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	139975	140031	139975	ID=MsaT005969.1.exon4;Parent=MsaT005969.1
Chr2	CDS	139975	140031	139975	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	140201	140353	140201	ID=MsaT005969.1.exon5;Parent=MsaT005969.1
Chr2	CDS	140201	140353	140201	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	140456	140540	140456	ID=MsaT005969.1.exon6;Parent=MsaT005969.1
Chr2	CDS	140456	140540	140456	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	144970	145069	144970	ID=MsaT005969.1.exon7;Parent=MsaT005969.1
Chr2	CDS	144970	145069	144970	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	145215	145364	145215	ID=MsaT005969.1.exon8;Parent=MsaT005969.1
Chr2	CDS	145215	145364	145215	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	145631	145750	145631	ID=MsaT005969.1.exon9;Parent=MsaT005969.1
Chr2	CDS	145631	145750	145631	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	145837	145912	145837	ID=MsaT005969.1.exon10;Parent=MsaT005969.1
Chr2	CDS	145837	145912	145837	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	146308	146473	146308	ID=MsaT005969.1.exon11;Parent=MsaT005969.1
Chr2	CDS	146308	146473	146308	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	146555	146874	146555	ID=MsaT005969.1.exon12;Parent=MsaT005969.1
Chr2	CDS	146555	146874	146555	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	146913	147041	146913	ID=MsaT005969.1.exon13;Parent=MsaT005969.1
Chr2	CDS	146913	147041	146913	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	148415	148605	148415	ID=MsaT005969.1.exon14;Parent=MsaT005969.1
Chr2	CDS	148415	148605	148415	ID=cds.MsaT005969.1;Parent=MsaT005969.1
Chr2	exon	148720	148891	148720	ID=MsaT005969.1.exon15;Parent=MsaT005969.1
Chr2	CDS	148720	148891	148720	ID=cds.MsaT005969.1;Parent=MsaT005969.1

Gene Sequence

>MsaT005969.1

ATGGCTTCAAATCACATGTCAGCTGTTACAAGCCGTGCAGGGTCAACTAATGATGCTTTATACAAGGAATTGTGGCATGCCTGTGCTGGACCCCTTGTCACTCTTCCTCGTGAAGGGGAGAGAGTGTATTACTTCCCTCAAGGTCACATGGAACAGCTCGAGGCATCTATGAATCAGGGATTAGAGCAGCAAATGCCTTCCTTTAATCTGCCCTCTAAAATATTGTGTAAAGTGGTCAATATTCATCTTCGGGCTGAACCTGAAACAGATGAAGTATATGCACAGATAACTCTGCTACCTGAAACCGATCAAAGTGAGGTGACAAGCCCAGACGATCCTCTGCCTGAACCTCCAAGGTGTACAGTTCATTCATTTTGCAAGACACTTACGGCTTCTGACACTAGCACTCACGGAGGTTTCTCTGTTCTTCGAAGACATGCAGATGATTGTCTTCCACCACTGGACATGACTCAGCAGCCACCGTGGCAAGAACTGGTTGCAACTGATTTGCATGGAAATGAGTGGCATTTTCGACATATTTTTCGCGTAATTTACAGGACAACCCAGGCGCCACTTGCTAACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAGTTAGTGGCTGGCGACGCATTTATATTCTTAAGAGCTCGAGTTGGAGTCAGGAGGCTCATGAGACAGCAAAGCAATATGCCATCTTCTGTCATATCTAGTCACAGCATGCATCTTGGTGTTTTGGCCACTGCATCTCATGCCATTTCCACCGGAACGTTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTAAGTATTAACAAGTATCTTGAGGCTCGAAATCACAAACTTTCTGTTGGGATGCGATTCAAAATGAGGTTTGAGGGTGATGAAGTACCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGAAGATAATAAATCATCTGTCTGGGCTGATTCTGAATGGCGATCGTTAAAGGTTCAATGGGATGAACCGTCATCAATTTTGCGTCCAGATAGAGTTTCTCCATGGGAATTGGAGCCACTTGTATCTACTCCTCCAGCAAACTCCCAGCCAACCCAACGAAACAAGAGATCACGGCCTCCTATTCTACCTTCAACAATGACCGATTCTTCTCTGCAAGGCATATGGAAATCACCAGTTGACGCTCCACCTTTCCCTTATCGCGACCCTCAACATGGAAGAGACCCCTATCCATCACCAAGATTCAGCTCTACTGCAACTAGCTTTCTTGGTTTTGGTGGGAACAGCCCTGCTTCTAACAAGTCAATGTATTGGTCTAGTAGATTGGAAAACTCTACAGAACCTTTTTCACCTGTAGCACTTAAAGAATCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGGCTCTTTGGGATTCAGTTACTTGAGAATTCTAATGCAGAAGAAAGTCTGCAAACTGCTCCTTTGTCAGGAAGGTCTGACCAACATTCTGAACCATCAAATGTTAATCGGTCTGATATTCCTTCAGTAAGTTGTGATGCTGACAAATCATGCCTGCGGTCTCCTCAGGAGTCACAAAGCAGACAAATAAGAAGCTGCACAAAGGTTCACATGCAAGGTATGGCTGTTGGAAGGGCTGTTGATTTAACACGTTTTGATGGATATGAGGATCTGCTTAGGAAATTGGAAGAGATGTTTGACATTGAGGGCGAGCTCTGTGGAGCAACAAAAAAATGGCTGGTAGTTTACACTGACAATGAAGATGATATGATGATGGTTGGGGATGATCCGTGGCTTGAATTTTGTAGCGTTGTGAGGAAAATGTTCATCTACACACCAGAGGAGGTGAAGAAGCTTTCACCGAAAATAGGTCTTCCGAGCAATGAAGAAGGTAAACCAAGCAAACTGGATTCCGAAGCAGTTGTCAATCCTGAGGACCGGTCATCTATTGTGGGGCCTGGTTGCTAA

Protein sequence

>MsaT005969.1

MASNHMSAVTSRAGSTNDALYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMNQGLEQQMPSFNLPSKILCKVVNIHLRAEPETDEVYAQITLLPETDQSEVTSPDDPLPEPPRCTVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMTQQPPWQELVATDLHGNEWHFRHIFRVIYRTTQAPLANHWVECLCQFQKLVAGDAFIFLRARVGVRRLMRQQSNMPSSVISSHSMHLGVLATASHAISTGTLFSVFYKPRTSRSEFIVSINKYLEARNHKLSVGMRFKMRFEGDEVPERRFSGTIVGVEDNKSSVWADSEWRSLKVQWDEPSSILRPDRVSPWELEPLVSTPPANSQPTQRNKRSRPPILPSTMTDSSLQGIWKSPVDAPPFPYRDPQHGRDPYPSPRFSSTATSFLGFGGNSPASNKSMYWSSRLENSTEPFSPVALKESGEKRQGTGNGCRLFGIQLLENSNAEESLQTAPLSGRSDQHSEPSNVNRSDIPSVSCDADKSCLRSPQESQSRQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIEGELCGATKKWLVVYTDNEDDMMMVGDDPWLEFCSVVRKMFIYTPEEVKKLSPKIGLPSNEEGKPSKLDSEAVVNPEDRSSIVGPGC*