AlfalfaGEDB | MsaG005972

M. sativa ssp. caerulea / MsaG005972

KEGG: K04421 K20716
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005972	XP_003592879.2	97.067	375	9	2	1	375	1	373	0.0	751

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005972	sp\|Q40541\|NPK1_TOBAC	39.590	293	140	7	9	291	79	344	8.95e-61	210

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005972	tr\|Q1SKU7\|Q1SKU7_MEDTR	97.067	375	9	2	1	375	1	373	0.0	751

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005972	MtrunA17_Chr2g0276831	97.067	375	9	2	1	375	1	373	0.0	751
MsaG005972	MtrunA17_Chr7g0272841	39.365	315	148	8	10	307	68	356	1.77e-62	211
MsaG005972	MtrunA17_Chr4g0052981	33.604	369	206	10	9	373	2	335	1.82e-61	201
MsaG005972	MtrunA17_Chr8g0375141	33.509	379	203	12	4	373	36	374	1.63e-60	199
MsaG005972	MtrunA17_Chr4g0052961	34.409	372	199	11	9	373	39	372	1.44e-59	197
MsaG005972	MtrunA17_Chr3g0130151	38.361	305	146	8	3	295	232	506	2.40e-59	202
MsaG005972	MtrunA17_Chr5g0402111	37.063	286	148	8	10	289	3	262	4.43e-59	194
MsaG005972	MtrunA17_Chr2g0322401	35.738	305	161	8	9	310	4	276	6.11e-59	196
MsaG005972	MtrunA17_Chr8g0384301	38.305	295	145	7	8	295	297	561	1.64e-58	201
MsaG005972	MtrunA17_Chr5g0402091	38.246	285	148	8	10	289	4	265	8.44e-58	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005972	AT5G55090.1	39.542	306	149	9	10	310	6	280	7.74e-63	208
MsaG005972	AT5G55090.2	41.343	283	131	9	10	289	68	318	1.35e-61	206
MsaG005972	AT1G09000.2	35.849	371	187	10	10	364	69	404	6.04e-60	204
MsaG005972	AT4G26890.1	36.387	382	179	14	10	373	5	340	7.94e-60	200
MsaG005972	AT1G09000.1	35.849	371	187	10	10	364	69	404	1.90e-59	204
MsaG005972	AT1G53570.7	39.249	293	141	7	8	293	212	474	2.35e-59	201
MsaG005972	AT1G53570.6	39.249	293	141	7	8	293	212	474	2.72e-59	200
MsaG005972	AT1G07150.2	37.742	310	153	9	8	310	7	283	3.64e-59	199
MsaG005972	AT1G07150.1	37.662	308	152	9	10	310	23	297	8.36e-59	198
MsaG005972	AT3G06030.1	38.361	305	151	8	9	303	67	344	8.56e-59	202

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Find 90 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGGAGTGAATGGATGA+AGG	0.512589	2:+159693	MsaT005972.1:CDS
AAAATGTGCGGAATAATAAA+AGG	0.245197	2:+159676	None:intergenic
AAAGAGTTTCTGTGCCCACA+AGG	0.682941	2:+160717	MsaT005972.1:CDS
AAAGGGAGTGAATGGATGAA+GGG	0.558737	2:+159694	MsaT005972.1:CDS
AAAGTAGTTGAAACAAGAAA+TGG	0.447215	2:-160537	None:intergenic
AAATGTGCGGAATAATAAAA+GGG	0.508624	2:+159677	None:intergenic
AACTGGAAGACAGTGCATCA+GGG	0.621540	2:+160754	MsaT005972.1:CDS
AAGGGTAAAATGGTTGGATG+TGG	0.544948	2:+159712	MsaT005972.1:CDS
AAGTTTGACATTCCCAGATG+AGG	0.603375	2:-160106	None:intergenic
AATGTCAAACTTGCAGATTT+TGG	0.355931	2:+160117	MsaT005972.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	159679	160806	159679	ID=MsaG005972
Chr2	mRNA	159679	160806	159679	ID=MsaT005972.1;Parent=MsaG005972
Chr2	exon	159679	160806	159679	ID=MsaT005972.1.exon1;Parent=MsaT005972.1
Chr2	CDS	159679	160806	159679	ID=cds.MsaT005972.1;Parent=MsaT005972.1

Gene Sequence

>MsaT005972.1

ATGTGCGGAATAATAAAAGGGAGTGAATGGATGAAGGGTAAAATGGTTGGATGTGGATCTTTTGGCTGTGTCCATCTAGCCATGAACAAATCCACCGGTGGACTTTTTGTGGTGAAAAAAGCGCATTCAGAGGCAGGACGTGATGCTCTGGAGAACGAGGTGAATATCCTAAATACATTAAATTCATCACCTTCACCCTATATTGTCCAATGTTTAGGGACAGATTATGATCATCAAGATAACCAACTGCATGTTTTCATGGAGTATATGTCCGGGGGTAGTTTGGCTGACGTGTCACACAAGTTTGGTGGTTCAATAGATGAAGATGTTGTTCGTGTGTATACTAGACAAATTGTGCATGGGTTATATCATCTTCACCAACATGGAATTGTACATTGTGACCTTAAGTGCAAAAACGTGCTTTTGGCCTCATCTGGGAATGTCAAACTTGCAGATTTTGGTTGTGCAAAAAGGGTCAAGAAAAACATGAACATGAACAAATCTTCATCATATATTATTGCTAATGGTGGCACTCCTCTATGGATGGCTCCCGAAGTATTATTAATGAAGAATGATAGTAGTATTAATGATGAGAGCCGGGTTGTTGTTGATTTTGCAGCAGCAGATATATGGTCTTTGGGATGTACTGTTATTGAAATGGCCACTGGCAGGCCTCCTTGGGTCGACGATGACCTCATTTCCATTTCAAATCCAATGGCTGCTATGTTTAAGATTGCATGTGGTGATGGGATACCTCAATTTCCAATTCATTTCTCTCAGGAGGGTTTTGATTTCTTGAGGAGGTGTTTGGTGAGAGATCCCAAAAAGAGGTCTACCGCACAGGAGTTGCTTAACCATCCATTTCTTGTTTCAACTACTTTAACTCATCACAAACACTACTCTGCTTCCTCGCCCGCATCTGTCTTGGAGGTTCATCAGTTTGAGGATACATATGATGATGATGACGACGACGACGACGACTCAGATGATAATGATGAATTAGTAAGTCCAGCAGGAGGGAATCATTTCTCCATCACGAAAGAGTTTCTGTGCCCACAAGGAACAACAATGTGGCAACTGGAAGACAGTGCATCAGGGAATCATTGGATCACTATTAGATCAAGGTGA

Protein sequence

>MsaT005972.1

MCGIIKGSEWMKGKMVGCGSFGCVHLAMNKSTGGLFVVKKAHSEAGRDALENEVNILNTLNSSPSPYIVQCLGTDYDHQDNQLHVFMEYMSGGSLADVSHKFGGSIDEDVVRVYTRQIVHGLYHLHQHGIVHCDLKCKNVLLASSGNVKLADFGCAKRVKKNMNMNKSSSYIIANGGTPLWMAPEVLLMKNDSSINDESRVVVDFAAADIWSLGCTVIEMATGRPPWVDDDLISISNPMAAMFKIACGDGIPQFPIHFSQEGFDFLRRCLVRDPKKRSTAQELLNHPFLVSTTLTHHKHYSASSPASVLEVHQFEDTYDDDDDDDDDSDDNDELVSPAGGNHFSITKEFLCPQGTTMWQLEDSASGNHWITIRSR*