Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005973 | XP_024631917.1 | 98.722 | 626 | 8 | 0 | 1 | 626 | 75 | 700 | 0.0 | 1305 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005973 | sp|Q9SY66|FRS11_ARATH | 80.064 | 622 | 124 | 0 | 1 | 622 | 53 | 674 | 0.0 | 1092 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005973 | tr|A0A396J3X5|A0A396J3X5_MEDTR | 98.722 | 626 | 8 | 0 | 1 | 626 | 75 | 700 | 0.0 | 1305 |
Gene ID | Type | Classification |
---|---|---|
MsaG005973 | TF | FAR1 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004202 | MsaG005973 | 0.812380 | 7.503463e-51 | 1.358364e-48 |
MsaG005202 | MsaG005973 | 0.811984 | 9.145900e-51 | 1.639544e-48 |
MsaG005973 | MsaG006601 | 0.807179 | 9.739681e-50 | 1.554152e-47 |
MsaG005973 | MsaG019140 | 0.840228 | 1.824050e-57 | 7.171625e-55 |
MsaG005973 | MsaG019137 | 0.818018 | 4.251866e-52 | 8.878894e-50 |
MsaG005973 | MsaG019451 | 0.867401 | 2.832114e-65 | 2.947849e-62 |
MsaG005973 | MsaG023619 | 0.814702 | 2.327941e-51 | 4.466363e-49 |
MsaG005973 | MsaG028358 | 0.801017 | 1.838239e-48 | 2.543124e-46 |
MsaG005973 | MsaG033437 | 0.801794 | 1.276735e-48 | 1.797692e-46 |
MsaG005973 | MsaG033759 | 0.810653 | 1.773385e-50 | 3.077001e-48 |
MsaG005973 | MsaG037863 | 0.811983 | 9.151205e-51 | 1.640445e-48 |
MsaG005973 | MsaG037867 | 0.804469 | 3.591650e-49 | 5.378441e-47 |
MsaG005973 | MsaG037869 | 0.803431 | 5.888406e-49 | 8.608309e-47 |
MsaG005973 | MsaG038395 | 0.804436 | 3.648731e-49 | 5.459754e-47 |
MsaG005973 | MsaG001257 | 0.831238 | 3.370429e-55 | 1.010661e-52 |
MsaG005973 | MsaG031903 | 0.813278 | 4.780089e-51 | 8.849081e-49 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005973 | MtrunA17_Chr2g0276841 | 98.722 | 626 | 8 | 0 | 1 | 626 | 75 | 700 | 0.0 | 1305 |
MsaG005973 | MtrunA17_Chr2g0294841 | 59.840 | 625 | 246 | 3 | 2 | 621 | 51 | 675 | 0.0 | 796 |
MsaG005973 | MtrunA17_Chr1g0198761 | 47.011 | 619 | 317 | 4 | 1 | 611 | 52 | 667 | 0.0 | 605 |
MsaG005973 | MtrunA17_Chr2g0290391 | 42.973 | 619 | 333 | 5 | 1 | 607 | 56 | 666 | 6.33e-179 | 523 |
MsaG005973 | MtrunA17_Chr5g0431001 | 50.238 | 420 | 204 | 2 | 1 | 415 | 66 | 485 | 7.33e-152 | 447 |
MsaG005973 | MtrunA17_Chr5g0448761 | 29.299 | 628 | 413 | 14 | 2 | 607 | 66 | 684 | 7.36e-79 | 266 |
MsaG005973 | MtrunA17_Chr2g0329031 | 27.429 | 638 | 416 | 17 | 2 | 625 | 20 | 624 | 1.80e-74 | 253 |
MsaG005973 | MtrunA17_Chr1g0207551 | 29.915 | 585 | 375 | 15 | 2 | 573 | 40 | 602 | 7.31e-71 | 244 |
MsaG005973 | MtrunA17_Chr1g0202341 | 28.114 | 562 | 381 | 10 | 2 | 552 | 57 | 606 | 1.50e-70 | 241 |
MsaG005973 | MtrunA17_Chr5g0440451 | 29.043 | 575 | 360 | 12 | 1 | 550 | 48 | 599 | 6.56e-64 | 227 |
MsaG005973 | MtrunA17_Chr2g0296781 | 28.152 | 579 | 360 | 20 | 2 | 552 | 3 | 553 | 7.59e-63 | 221 |
MsaG005973 | MtrunA17_Chr3g0082121 | 28.086 | 559 | 374 | 13 | 2 | 552 | 49 | 587 | 5.66e-61 | 215 |
MsaG005973 | MtrunA17_Chr3g0080351 | 26.266 | 632 | 401 | 17 | 2 | 609 | 82 | 672 | 1.50e-60 | 216 |
MsaG005973 | MtrunA17_Chr2g0287651 | 26.655 | 574 | 373 | 15 | 2 | 552 | 81 | 629 | 2.45e-59 | 213 |
MsaG005973 | MtrunA17_Chr5g0441581 | 27.641 | 568 | 369 | 14 | 2 | 552 | 38 | 580 | 1.76e-58 | 208 |
MsaG005973 | MtrunA17_Chr1g0203051 | 25.490 | 561 | 374 | 14 | 2 | 542 | 85 | 621 | 6.90e-57 | 203 |
MsaG005973 | MtrunA17_Chr6g0477261 | 30.303 | 462 | 270 | 15 | 122 | 552 | 2 | 442 | 1.52e-56 | 202 |
MsaG005973 | MtrunA17_Chr8g0363841 | 25.000 | 656 | 435 | 14 | 4 | 623 | 25 | 659 | 2.94e-56 | 202 |
MsaG005973 | MtrunA17_Chr6g0458391 | 27.094 | 561 | 370 | 12 | 2 | 552 | 231 | 762 | 1.52e-54 | 198 |
MsaG005973 | MtrunA17_Chr6g0458391 | 33.333 | 117 | 72 | 3 | 2 | 118 | 97 | 207 | 1.97e-11 | 67.4 |
MsaG005973 | MtrunA17_Chr2g0287061 | 26.018 | 565 | 349 | 14 | 2 | 552 | 189 | 698 | 4.08e-52 | 192 |
MsaG005973 | MtrunA17_Chr2g0291581 | 26.351 | 592 | 379 | 16 | 2 | 567 | 77 | 637 | 5.95e-51 | 187 |
MsaG005973 | MtrunA17_Chr3g0118611 | 30.075 | 399 | 254 | 5 | 158 | 550 | 117 | 496 | 9.00e-51 | 187 |
MsaG005973 | MtrunA17_Chr2g0324011 | 25.220 | 567 | 391 | 11 | 2 | 552 | 16 | 565 | 2.13e-50 | 184 |
MsaG005973 | MtrunA17_Chr5g0448511 | 28.571 | 378 | 263 | 3 | 179 | 550 | 16 | 392 | 1.27e-48 | 178 |
MsaG005973 | MtrunA17_Chr1g0196541 | 24.458 | 646 | 432 | 17 | 2 | 623 | 3 | 616 | 3.12e-48 | 180 |
MsaG005973 | MtrunA17_Chr1g0203721 | 23.710 | 620 | 426 | 15 | 1 | 594 | 68 | 666 | 2.81e-47 | 178 |
MsaG005973 | MtrunA17_Chr2g0291591 | 23.654 | 520 | 358 | 12 | 2 | 504 | 70 | 567 | 6.32e-38 | 148 |
MsaG005973 | MtrunA17_Chr1g0164591 | 27.864 | 323 | 214 | 8 | 76 | 394 | 1 | 308 | 5.14e-34 | 132 |
MsaG005973 | MtrunA17_Chr3g0081281 | 49.462 | 93 | 47 | 0 | 139 | 231 | 1 | 93 | 1.51e-28 | 109 |
MsaG005973 | MtrunA17_Chr7g0258861 | 28.223 | 287 | 193 | 7 | 2 | 283 | 16 | 294 | 8.80e-24 | 102 |
MsaG005973 | MtrunA17_Chr2g0308841 | 25.455 | 220 | 150 | 4 | 348 | 557 | 14 | 229 | 3.86e-13 | 70.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG005973 | AT1G10240.2 | 80.064 | 622 | 124 | 0 | 1 | 622 | 53 | 674 | 0.0 | 1092 |
MsaG005973 | AT1G10240.1 | 80.064 | 622 | 124 | 0 | 1 | 622 | 53 | 674 | 0.0 | 1092 |
MsaG005973 | AT5G28530.1 | 42.097 | 620 | 342 | 6 | 1 | 608 | 60 | 674 | 1.12e-171 | 505 |
MsaG005973 | AT5G28530.3 | 42.097 | 620 | 338 | 6 | 1 | 608 | 60 | 670 | 3.67e-171 | 503 |
MsaG005973 | AT5G28530.2 | 42.097 | 620 | 338 | 6 | 1 | 608 | 60 | 670 | 3.67e-171 | 503 |
MsaG005973 | AT5G28530.4 | 38.361 | 610 | 316 | 8 | 1 | 608 | 60 | 611 | 1.40e-136 | 413 |
MsaG005973 | AT5G28530.5 | 38.361 | 610 | 312 | 8 | 1 | 608 | 60 | 607 | 1.49e-136 | 412 |
MsaG005973 | AT4G38180.1 | 30.732 | 615 | 397 | 13 | 2 | 597 | 79 | 683 | 9.27e-81 | 271 |
MsaG005973 | AT4G15090.1 | 29.316 | 614 | 397 | 14 | 2 | 596 | 57 | 652 | 1.05e-75 | 258 |
MsaG005973 | AT4G15090.5 | 29.316 | 614 | 397 | 14 | 2 | 596 | 57 | 652 | 1.05e-75 | 258 |
MsaG005973 | AT4G15090.3 | 29.316 | 614 | 397 | 14 | 2 | 596 | 57 | 652 | 1.05e-75 | 258 |
MsaG005973 | AT4G15090.2 | 29.316 | 614 | 397 | 14 | 2 | 596 | 57 | 652 | 1.05e-75 | 258 |
MsaG005973 | AT4G15090.4 | 29.316 | 614 | 397 | 14 | 2 | 596 | 57 | 652 | 1.05e-75 | 258 |
MsaG005973 | AT1G76320.3 | 26.634 | 612 | 405 | 14 | 2 | 596 | 3 | 587 | 9.62e-62 | 217 |
MsaG005973 | AT1G76320.2 | 26.634 | 612 | 405 | 14 | 2 | 596 | 3 | 587 | 2.79e-61 | 217 |
MsaG005973 | AT1G76320.1 | 26.634 | 612 | 405 | 14 | 2 | 596 | 3 | 587 | 3.38e-61 | 217 |
MsaG005973 | AT1G76320.4 | 26.634 | 612 | 405 | 14 | 2 | 596 | 3 | 587 | 3.38e-61 | 217 |
MsaG005973 | AT3G22170.2 | 25.127 | 589 | 354 | 17 | 2 | 552 | 76 | 615 | 2.17e-55 | 202 |
MsaG005973 | AT3G22170.1 | 25.127 | 589 | 354 | 17 | 2 | 552 | 76 | 615 | 2.17e-55 | 202 |
MsaG005973 | AT2G27110.2 | 25.884 | 622 | 401 | 17 | 2 | 609 | 55 | 630 | 2.17e-52 | 193 |
MsaG005973 | AT2G27110.1 | 25.884 | 622 | 401 | 17 | 2 | 609 | 55 | 630 | 2.17e-52 | 193 |
MsaG005973 | AT3G06250.2 | 26.445 | 571 | 335 | 16 | 2 | 552 | 196 | 701 | 4.48e-50 | 186 |
MsaG005973 | AT3G06250.1 | 26.445 | 571 | 335 | 16 | 2 | 552 | 196 | 701 | 4.48e-50 | 186 |
MsaG005973 | AT3G06250.3 | 26.445 | 571 | 335 | 16 | 2 | 552 | 196 | 701 | 4.48e-50 | 186 |
MsaG005973 | AT1G52520.1 | 26.289 | 582 | 361 | 18 | 2 | 552 | 91 | 635 | 7.21e-49 | 182 |
MsaG005973 | AT5G18960.2 | 26.620 | 571 | 337 | 18 | 2 | 552 | 217 | 725 | 2.91e-48 | 181 |
MsaG005973 | AT5G18960.1 | 26.620 | 571 | 337 | 18 | 2 | 552 | 217 | 725 | 2.91e-48 | 181 |
MsaG005973 | AT4G19990.3 | 25.920 | 598 | 357 | 15 | 2 | 567 | 27 | 570 | 1.35e-47 | 179 |
MsaG005973 | AT4G19990.4 | 25.920 | 598 | 357 | 15 | 2 | 567 | 27 | 570 | 1.35e-47 | 179 |
MsaG005973 | AT4G19990.5 | 25.920 | 598 | 357 | 15 | 2 | 567 | 27 | 570 | 1.81e-47 | 178 |
MsaG005973 | AT4G19990.7 | 25.920 | 598 | 357 | 15 | 2 | 567 | 41 | 584 | 2.47e-47 | 178 |
MsaG005973 | AT4G19990.6 | 26.087 | 598 | 356 | 15 | 2 | 567 | 27 | 570 | 3.11e-47 | 178 |
MsaG005973 | AT4G19990.2 | 26.087 | 598 | 356 | 15 | 2 | 567 | 27 | 570 | 3.11e-47 | 178 |
MsaG005973 | AT2G27110.3 | 27.802 | 464 | 295 | 11 | 158 | 609 | 50 | 485 | 5.16e-47 | 176 |
MsaG005973 | AT1G80010.1 | 26.962 | 586 | 365 | 17 | 2 | 552 | 101 | 658 | 2.22e-45 | 172 |
MsaG005973 | AT4G38170.1 | 27.493 | 371 | 257 | 5 | 189 | 552 | 31 | 396 | 5.95e-43 | 162 |
MsaG005973 | AT4G19990.1 | 25.906 | 552 | 334 | 13 | 43 | 567 | 10 | 513 | 6.49e-43 | 164 |
MsaG005973 | AT2G32250.5 | 21.403 | 556 | 383 | 11 | 2 | 552 | 44 | 550 | 3.43e-42 | 163 |
MsaG005973 | AT2G32250.8 | 21.569 | 561 | 376 | 12 | 2 | 552 | 3 | 509 | 5.25e-42 | 162 |
MsaG005973 | AT2G32250.7 | 22.202 | 563 | 370 | 13 | 2 | 552 | 3 | 509 | 5.35e-42 | 162 |
MsaG005973 | AT2G32250.6 | 21.569 | 561 | 376 | 12 | 2 | 552 | 44 | 550 | 6.54e-42 | 162 |
MsaG005973 | AT2G32250.1 | 21.569 | 561 | 376 | 12 | 2 | 552 | 44 | 550 | 6.54e-42 | 162 |
MsaG005973 | AT2G32250.3 | 21.569 | 561 | 376 | 12 | 2 | 552 | 44 | 550 | 6.54e-42 | 162 |
MsaG005973 | AT2G32250.2 | 22.359 | 568 | 363 | 14 | 2 | 552 | 44 | 550 | 6.80e-42 | 162 |
MsaG005973 | AT2G32250.4 | 22.359 | 568 | 363 | 14 | 2 | 552 | 44 | 550 | 6.80e-42 | 162 |
Find 129 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTATTGATTAACAACCTTTA+TGG | 0.138871 | 2:+163384 | None:intergenic |
AGGGAGATGGTCTGTTCTTT+TGG | 0.145904 | 2:-162581 | MsaT005973.1:CDS |
ATAAGCAAAACCACTGAATT+TGG | 0.147239 | 2:-163967 | MsaT005973.1:CDS |
CCTTCTTGGTAGGCTTTCTT+AGG | 0.189142 | 2:-162836 | MsaT005973.1:intron |
TTGACATGCCGCTGGGGATA+TGG | 0.190733 | 2:-163489 | MsaT005973.1:CDS |
TTAGAGATGAAACCATATTT+TGG | 0.193583 | 2:+161674 | None:intergenic |
GTGTACTCAAATTTAAAATT+AGG | 0.227389 | 2:+163628 | None:intergenic |
TCTTGGTTCAATGCTGTTCT+AGG | 0.230975 | 2:-162683 | MsaT005973.1:CDS |
CCACCATAATCATGAACTTT+TGG | 0.234641 | 2:-163911 | MsaT005973.1:CDS |
GTTCCAAAAGTTCATGATTA+TGG | 0.235757 | 2:+163908 | None:intergenic |
TATGGAATGCCCTGCTTCTT+TGG | 0.236061 | 2:-163451 | MsaT005973.1:CDS |
AGTTAAGCTATTCCAAAATA+TGG | 0.247042 | 2:-161686 | MsaT005973.1:CDS |
CTTAGTTTGGGTTGATGATT+TGG | 0.272442 | 2:+164041 | None:intergenic |
CTGGCACATTGTAATGAAAT+TGG | 0.282052 | 2:+161568 | None:intergenic |
ATCCTTATGTTTGCCAAAAC+AGG | 0.285583 | 2:-163826 | MsaT005973.1:CDS |
ATGAACAGAAATCCCTGTTT+TGG | 0.290771 | 2:+163813 | None:intergenic |
AAATCTAGGGTTTCTTCTTC+TGG | 0.296205 | 2:+163685 | None:intergenic |
TATTTCGTTGAGGCTTAGTT+TGG | 0.297452 | 2:+164028 | None:intergenic |
TGCACATTCTTAACAAATCT+AGG | 0.298629 | 2:+163671 | None:intergenic |
AAGAATGTGCAGAAATATTA+AGG | 0.303262 | 2:-163659 | MsaT005973.1:CDS |
AAACCAGTGACGCGCCATTC+TGG | 0.316021 | 2:+163940 | None:intergenic |
TTGGAATAGCTTAACTCTTT+CGG | 0.327991 | 2:+161693 | None:intergenic |
TAGTCATTCCCGCAAGAAAA+TGG | 0.334474 | 2:+162486 | None:intergenic |
TAGCACACAGCCAAAGAAGC+AGG | 0.342849 | 2:+163441 | None:intergenic |
TCATCAAATGATGAGACTTA+TGG | 0.350578 | 2:-163794 | MsaT005973.1:CDS |
AAGGAGGTCGCAGAGTTTAC+TGG | 0.359371 | 2:-161906 | MsaT005973.1:CDS |
CAAAACATGCTTTCTGCATA+TGG | 0.375824 | 2:-162727 | MsaT005973.1:CDS |
ATATAGCTCGCGCTCACTTT+GGG | 0.386287 | 2:-162528 | MsaT005973.1:CDS |
AGAAAATGGCTTCTTAGATA+TGG | 0.389745 | 2:+162500 | None:intergenic |
GGAAGGAATCGAACTTGGTT+TGG | 0.392049 | 2:+163886 | None:intergenic |
TATATAGCTCGCGCTCACTT+TGG | 0.393538 | 2:-162529 | MsaT005973.1:CDS |
ATCTTCCAGATGTGGTTGTC+AGG | 0.399237 | 2:-164001 | MsaT005973.1:CDS |
GCTTGCTCACTTTGTTGAAC+AGG | 0.402511 | 2:-162402 | MsaT005973.1:intron |
CTTGCGGGAATGACTACAAC+TGG | 0.403842 | 2:-162479 | MsaT005973.1:CDS |
CACCGAAGATATCATACAAT+TGG | 0.404756 | 2:+163551 | None:intergenic |
CGTAGCAGCGTGTGATTCCA+TGG | 0.410301 | 2:+162041 | None:intergenic |
GTCTAAAGAACGATTAGATA+TGG | 0.411264 | 2:-161635 | MsaT005973.1:CDS |
TAAGCAAAACCACTGAATTT+GGG | 0.413718 | 2:-163966 | MsaT005973.1:CDS |
AATAGAGAAGCCGCAGGTCT+TGG | 0.423335 | 2:+164152 | None:intergenic |
CCTCCAGAATGGCGCGTCAC+TGG | 0.424652 | 2:-163943 | MsaT005973.1:CDS |
TGGGTTGGGATAAATAATTA+TGG | 0.425124 | 2:-163469 | MsaT005973.1:CDS |
CACTGCATTTGACATGCCGC+TGG | 0.431194 | 2:-163497 | MsaT005973.1:CDS |
ATAAGCCTGACAACCACATC+TGG | 0.432847 | 2:+163996 | None:intergenic |
CTTGAGAAGTGCGTCGAACC+TGG | 0.435619 | 2:-163769 | MsaT005973.1:CDS |
CCAGAGATACTTCTACCATT+AGG | 0.440893 | 2:-161549 | MsaT005973.1:CDS |
TCTCTGAGAGTTCTTTCAAC+AGG | 0.443737 | 2:-161814 | MsaT005973.1:CDS |
CCTAATGGTAGAAGTATCTC+TGG | 0.445108 | 2:+161549 | None:intergenic |
ATTTCGTTGAGGCTTAGTTT+GGG | 0.449059 | 2:+164029 | None:intergenic |
CGGATGGGAAGATATGCATC+TGG | 0.452008 | 2:+161775 | None:intergenic |
CAAAATGTTAGCCTCAAAAC+AGG | 0.452685 | 2:-162069 | MsaT005973.1:CDS |
TGCCGCTGGGGATATGGGTT+GGG | 0.453477 | 2:-163483 | MsaT005973.1:CDS |
TGACATGCCGCTGGGGATAT+GGG | 0.454706 | 2:-163488 | MsaT005973.1:CDS |
TAGGTGAACGCTACAATGAC+TGG | 0.457850 | 2:-162664 | MsaT005973.1:CDS |
GTTTGGGTTGATGATTTGGC+AGG | 0.459466 | 2:+164045 | None:intergenic |
TAAACGGTTGTTTGCATCAA+GGG | 0.461284 | 2:+163606 | None:intergenic |
TACTTTGTTTGTCACCGTGC+TGG | 0.469337 | 2:-164075 | MsaT005973.1:CDS |
TAAATTAACAATGTGTCGAT+TGG | 0.471898 | 2:+162550 | None:intergenic |
TCAGTAAAAGGCAAATATCC+AGG | 0.474275 | 2:+163751 | None:intergenic |
ATCCAATTGTATGATATCTT+CGG | 0.477575 | 2:-163553 | MsaT005973.1:CDS |
TTGACGACTTTGAACTAGGC+TGG | 0.486705 | 2:-162604 | MsaT005973.1:CDS |
TGAAGCTTCGAAAAGGCAAA+AGG | 0.488243 | 2:+162009 | None:intergenic |
GCACATTCTTAACAAATCTA+GGG | 0.488962 | 2:+163672 | None:intergenic |
AAATTCCAGAAAATTCAAAC+TGG | 0.489969 | 2:+161848 | None:intergenic |
CAGTCATCATAGATTCCTAA+TGG | 0.491526 | 2:+161534 | None:intergenic |
ACTCTTTCGGCATGATCGCT+AGG | 0.495476 | 2:+161706 | None:intergenic |
CTGAATTTGGGCCTCCAGAA+TGG | 0.496915 | 2:-163954 | MsaT005973.1:CDS |
ATCTAATCGTTCTTTAGACT+TGG | 0.498595 | 2:+161639 | None:intergenic |
TCAGTTGACGACTTTGAACT+AGG | 0.498779 | 2:-162608 | MsaT005973.1:CDS |
ACTGCATTTGACATGCCGCT+GGG | 0.500632 | 2:-163496 | MsaT005973.1:CDS |
ATGCAGGAAGGAATCGAACT+TGG | 0.504851 | 2:+163881 | None:intergenic |
ATTAACAACCTTTATGGCCC+AGG | 0.508147 | 2:+163390 | None:intergenic |
GCTTCAAGAACAACTTGTGT+TGG | 0.510259 | 2:-161992 | MsaT005973.1:CDS |
ATGCCGCTGGGGATATGGGT+TGG | 0.515095 | 2:-163484 | MsaT005973.1:CDS |
TTGTTCTTGAAGCTTCGAAA+AGG | 0.515435 | 2:+162002 | None:intergenic |
GTAGCAGCGTGTGATTCCAT+GGG | 0.522003 | 2:+162042 | None:intergenic |
TAGTAGCAAAGTTTCCGTCT+TGG | 0.523045 | 2:-162700 | MsaT005973.1:CDS |
CATGGAATCACACGCTGCTA+CGG | 0.524468 | 2:-162040 | MsaT005973.1:CDS |
ACCGTTTAGAAAATATTGCC+TGG | 0.526747 | 2:-163591 | MsaT005973.1:CDS |
CAATTAACGCCTTCATTCAA+CGG | 0.534336 | 2:-162445 | MsaT005973.1:CDS |
CTAAACGGTTGTTTGCATCA+AGG | 0.535769 | 2:+163605 | None:intergenic |
ACTGATACGACGCCATCGGA+TGG | 0.541479 | 2:+161759 | None:intergenic |
CTGATACGACGCCATCGGAT+GGG | 0.543366 | 2:+161760 | None:intergenic |
TCTGATATAGTTCTGTATGC+AGG | 0.547078 | 2:+163865 | None:intergenic |
TACTGCAAGATGAAACTGTC+CGG | 0.547112 | 2:-163420 | MsaT005973.1:CDS |
TCCTTATGTTTGCCAAAACA+GGG | 0.551056 | 2:-163825 | MsaT005973.1:CDS |
GAGACAGAAGAATGGAAACT+TGG | 0.557670 | 2:+161605 | None:intergenic |
TGAACTAGGCTGGAGGGAGA+TGG | 0.559599 | 2:-162594 | MsaT005973.1:CDS |
TGATCAGTTAATATAGTCTG+TGG | 0.559623 | 2:+162794 | None:intergenic |
ATCATACAATTGGATGGATG+AGG | 0.563319 | 2:+163561 | None:intergenic |
CAGCTTATAATTCCTTCATG+AGG | 0.566205 | 2:+161880 | None:intergenic |
AGACATCACACAAAAGTTGA+AGG | 0.566338 | 2:-161925 | MsaT005973.1:CDS |
TGGCAGGAGTGTTGCCAGCA+CGG | 0.567905 | 2:+164061 | None:intergenic |
CCAAAAGTTCATGATTATGG+TGG | 0.568510 | 2:+163911 | None:intergenic |
GAAGATATCATACAATTGGA+TGG | 0.569457 | 2:+163555 | None:intergenic |
AGCTTATAATTCCTTCATGA+GGG | 0.573229 | 2:+161881 | None:intergenic |
TTCTGGAGGCCCAAATTCAG+TGG | 0.573388 | 2:+163957 | None:intergenic |
TCTTATGCGAGACAGAAGAA+TGG | 0.582203 | 2:+161597 | None:intergenic |
CGACTTTGAACTAGGCTGGA+GGG | 0.582819 | 2:-162600 | MsaT005973.1:CDS |
AATAGAAAATCTTCCAGATG+TGG | 0.584217 | 2:-164009 | MsaT005973.1:CDS |
GGAAAAGACGGTGTTGGCAA+AGG | 0.584524 | 2:-164111 | MsaT005973.1:CDS |
ACTTAGAAACCGTTGAATGA+AGG | 0.586482 | 2:+162436 | None:intergenic |
AAGTTCATGATTATGGTGGT+TGG | 0.589394 | 2:+163915 | None:intergenic |
ATGCATATCTTCCCATCCGA+TGG | 0.597365 | 2:-161771 | MsaT005973.1:CDS |
AGCACACAGCCAAAGAAGCA+GGG | 0.598142 | 2:+163442 | None:intergenic |
GTTTACTGGTCCCCTCATGA+AGG | 0.604499 | 2:-161892 | MsaT005973.1:CDS |
GATGGATGAGGCATACGACC+AGG | 0.609900 | 2:+163573 | None:intergenic |
CCAGTGACGCGCCATTCTGG+AGG | 0.616513 | 2:+163943 | None:intergenic |
TGATATCTTCGGTGATGCTG+TGG | 0.618259 | 2:-163542 | MsaT005973.1:CDS |
ACCGAAGGAAAAGACGGTGT+TGG | 0.619616 | 2:-164117 | MsaT005973.1:CDS |
GCACACTGATACGACGCCAT+CGG | 0.621865 | 2:+161755 | None:intergenic |
TTATGGCCCAGGAAAATGAC+CGG | 0.623189 | 2:+163401 | None:intergenic |
CTGCATTTGACATGCCGCTG+GGG | 0.625737 | 2:-163495 | MsaT005973.1:CDS |
GGATGGGAAGATATGCATCT+GGG | 0.625859 | 2:+161776 | None:intergenic |
ATTAGACGTCATCGTACCGA+AGG | 0.626176 | 2:-164132 | MsaT005973.1:CDS |
TCATAAGCAGCATCGTGAGT+GGG | 0.627606 | 2:+164192 | None:intergenic |
GGTTTCTAAGTGCACAGACA+CGG | 0.627911 | 2:-162424 | MsaT005973.1:CDS |
GTCATAAGCAGCATCGTGAG+TGG | 0.636238 | 2:+164191 | None:intergenic |
TAGCAGCGTGTGATTCCATG+GGG | 0.638176 | 2:+162043 | None:intergenic |
TCGAAAAGGCAAAAGGAGTG+AGG | 0.641424 | 2:+162016 | None:intergenic |
GCTTATAATTCCTTCATGAG+GGG | 0.641658 | 2:+161882 | None:intergenic |
ACGTCTAATAGAGAAGCCGC+AGG | 0.646866 | 2:+164146 | None:intergenic |
ACGACTTTGAACTAGGCTGG+AGG | 0.648729 | 2:-162601 | MsaT005973.1:CDS |
TGAACGCTACAATGACTGGA+AGG | 0.649833 | 2:-162660 | MsaT005973.1:CDS |
ATATAGTTCTGTATGCAGGA+AGG | 0.660408 | 2:+163869 | None:intergenic |
AGAACAGCATTGAACCAAGA+CGG | 0.662125 | 2:+162686 | None:intergenic |
CATCGTACCGAAGGAAAAGA+CGG | 0.676411 | 2:-164123 | MsaT005973.1:CDS |
ATCCCAACCCATATCCCCAG+CGG | 0.701870 | 2:+163481 | None:intergenic |
CATCACACAAAAGTTGAAGG+AGG | 0.714854 | 2:-161922 | MsaT005973.1:CDS |
AGCAGCGTGTGATTCCATGG+GGG | 0.749910 | 2:+162044 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 161540 | 164220 | 161540 | ID=MsaG005973 |
Chr2 | mRNA | 161540 | 164220 | 161540 | ID=MsaT005973.1;Parent=MsaG005973 |
Chr2 | exon | 161540 | 162154 | 161540 | ID=MsaT005973.1.exon3;Parent=MsaT005973.1 |
Chr2 | CDS | 161540 | 162154 | 161540 | ID=cds.MsaT005973.1;Parent=MsaT005973.1 |
Chr2 | exon | 162403 | 162846 | 162403 | ID=MsaT005973.1.exon2;Parent=MsaT005973.1 |
Chr2 | CDS | 162403 | 162846 | 162403 | ID=cds.MsaT005973.1;Parent=MsaT005973.1 |
Chr2 | exon | 163399 | 164220 | 163399 | ID=MsaT005973.1.exon1;Parent=MsaT005973.1 |
Chr2 | CDS | 163399 | 164220 | 163399 | ID=cds.MsaT005973.1;Parent=MsaT005973.1 |
Gene Sequence |
Protein sequence |