AlfalfaGEDB | MsaG005977

M. sativa ssp. caerulea / MsaG005977

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005977	XP_024631916.1	74.483	290	68	3	553	839	476	762	1.72e-113	376
MsaG005977	XP_024631916.1	86.658	742	91	4	1	736	1	740	0.0	1196

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005977	sp\|Q9SY74\|C3H5_ARATH	57.110	436	143	7	4	404	34	460	8.82e-166	504

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005977	tr\|G7IN58\|G7IN58_MEDTR	71.739	368	73	5	553	906	477	827	3.13e-134	431
MsaG005977	tr\|G7IN58\|G7IN58_MEDTR	86.676	743	90	4	1	736	1	741	0.0	1195

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TFs/TRs:

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Gene ID	Type	Classification
MsaG005977	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005977	MtrunA17_Chr2g0276901	88.377	499	56	2	239	736	21	518	0.0	860
MsaG005977	MtrunA17_Chr2g0276901	74.483	290	68	3	553	839	254	540	6.17e-119	372
MsaG005977	MtrunA17_Chr2g0276891	81.967	244	37	2	1	238	1	243	7.62e-103	320
MsaG005977	MtrunA17_Chr2g0320801	40.120	167	95	2	179	343	9	172	5.38e-34	133
MsaG005977	MtrunA17_Chr1g0162821	40.120	167	95	2	179	343	9	172	2.05e-33	130
MsaG005977	MtrunA17_Chr7g0265751	34.872	195	95	4	172	343	1	186	3.12e-32	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005977	AT1G10320.2	57.907	430	140	7	4	404	34	451	1.93e-167	506
MsaG005977	AT1G10320.1	57.110	436	143	7	4	404	34	460	8.96e-167	504
MsaG005977	AT1G27650.1	40.120	167	95	2	179	343	9	172	2.24e-33	131
MsaG005977	AT5G42820.1	40.120	167	95	2	179	343	9	172	3.96e-33	130
MsaG005977	AT5G42820.2	40.120	167	95	2	179	343	9	172	3.96e-33	130
MsaG005977	AT1G27650.2	33.333	126	79	2	221	344	1	123	8.43e-16	78.6

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Find 232 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGCATGTCGTTT+CGG	0.428061	2:+222491	MsaT005977.1:CDS
AAAAGTATCATGAACACACT+AGG	0.623161	2:+226389	MsaT005977.1:CDS
AAAAGTGGAGCTGGGGTAGT+AGG	0.443968	2:+227028	MsaT005977.1:CDS
AAAATTGCAAGCTGTTCCAT+GGG	0.569618	2:-225347	None:intergenic
AAAGAACTCCTGATGAGGAA+TGG	0.572610	2:+226272	MsaT005977.1:CDS
AAAGAATCTAGACATCAAAG+CGG	0.719311	2:+227360	MsaT005977.1:CDS
AAAGCAAAGAACTCCTGATG+AGG	0.624280	2:+226267	MsaT005977.1:CDS
AAAGGAAAGGATCAAGACAT+CGG	0.653130	2:+226872	MsaT005977.1:CDS
AAAGGAAGGAACTCGCAAAA+GGG	0.512313	2:+226772	MsaT005977.1:CDS
AAAGGCACCATAGTAGCCAA+AGG	0.654107	2:+227094	MsaT005977.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	221745	227692	221745	ID=MsaG005977
Chr2	mRNA	221745	227692	221745	ID=MsaT005977.1;Parent=MsaG005977
Chr2	exon	221745	222191	221745	ID=MsaT005977.1.exon1;Parent=MsaT005977.1
Chr2	CDS	221745	222191	221745	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	222282	222383	222282	ID=MsaT005977.1.exon2;Parent=MsaT005977.1
Chr2	CDS	222282	222383	222282	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	222464	222622	222464	ID=MsaT005977.1.exon3;Parent=MsaT005977.1
Chr2	CDS	222464	222622	222464	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	223958	224050	223958	ID=MsaT005977.1.exon4;Parent=MsaT005977.1
Chr2	CDS	223958	224050	223958	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	224163	224279	224163	ID=MsaT005977.1.exon5;Parent=MsaT005977.1
Chr2	CDS	224163	224279	224163	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	225062	225136	225062	ID=MsaT005977.1.exon6;Parent=MsaT005977.1
Chr2	CDS	225062	225136	225062	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	225340	225557	225340	ID=MsaT005977.1.exon7;Parent=MsaT005977.1
Chr2	CDS	225340	225557	225340	ID=cds.MsaT005977.1;Parent=MsaT005977.1
Chr2	exon	226183	227692	226183	ID=MsaT005977.1.exon8;Parent=MsaT005977.1
Chr2	CDS	226183	227692	226183	ID=cds.MsaT005977.1;Parent=MsaT005977.1

Gene Sequence

>MsaT005977.1

ATGTGGTCGAATCGAAAGGAGAAGAGGAAGGCATTGAAGAAATTGAAGAGAAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAAGCTCGACTCAACGATCCTGAAGAGGAGAGAAAGAGGTTACTCTTGGAGCAGCAAGAGGCGGAGAGAATCGAAAGGGATAGAATCGCTTTCGAAGAGAGGGAGAAAGCTTGGATTATCAAACAACAACAACAACGAGACCTAGAACAAGAAGAAGAACAAGAACTATCTCAACGAGACGATATCAAAGAAGAAGATGATAAATCAGAATTAGAAGAAGAAGAAGAAGATGATGATGATGATAGTCCTCCGGAGATTATTTGGCTAGGAAATGAAATTATCATCAAAAAGAAGAAAAAGAAAAAGCTGAACCCCAATCCCCTTCTTCTCCTCCACAACCACCAGCACCAGCATCATGATAATAGACCTACATCAAATCCCTTTCCCCCGGAATCTCCCTCTCAACCTCTGCACAATGTTGCTCAACAACTACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGTCCCTTTCATCTTAAAACTGCAGCATGTCGTTTCGGTGACCGATGTAGCAGGGTCCATTTCTACCCCGATAAGTCCTGCACCCTTCTCATCAAAAACATGTACAATGGTCCTGGACTTGCTTGGGAACAAGATCAAGGCCTTGAGTATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGGTTGGTGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACCTGCGAGGAAATGTCTACGTGCAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTTGCTGGGAAACAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATTCACTGTTTCCGTAATCCTGGCGGAGACTATGAATGGGCAGATTCTGATAAACCACCCCCGAAATTTTGGGTAAAGGAGATGGTTGCTTTATTTGGTCATTCTGATAATTGTGAGATGTCAAGGGTCCATGGAAATTTTAGCACGCTGAAGCACTCCAGCAATATCCTAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGATGGGTCAATTAAATGGTAGTCGTTCTAGTAGAAGAAAACAGGAGGATGAAAGAAAGCAAAGAACTCCTGATGAGGAATGGAATACCAACTTTAAATACAATCATAAAAGAAAATACAGGAACAAAACTTCTGATTCTGATTCTGACAGGGAAGGGTTAGAAGAGGTAGATAGGAAAAAGTATCATGAACACACTAGGAAAAGCTCATTTAATAGGAACAAGGATGACAATAGCAGAAAGCATGAAGAGTATTCTGATGTAGATAGGGTTACTATAAACAGGGACAATGAAAAGCAGCATGATAGAAAAGGAAGGAACTCACAAAAGTGGATCTGGGATAGTAGTAGGAGCTGGATTCATGAGGCTGGATGTGATGAGGATAGAGATGGAGATGGAAGAAGACACCATAGTAGCCGAAGGAAAGGATCGAGACATCAGAGAAGGGACAGCAGCAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAGTATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCATGGCAGTAAAGGAAGGAACTCGCAAAAGGGGAACAGCGATAGTAGATACCGGATTTATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAGGCACCATGGTAGCCAAAGGAAAGGATCAAGACATCGGAGCAGGGACAGCAGTAATGTAGCTGACGAGTCTGAATCTGACAAAGATGGAGGACATGAGTATTCTGACGTGGATTGGGATACTATGAGTAGGGACAACGAAAAGCAGCATGACAGCAAAGGAAGGAACTCACAAAAGTGGAGCTGGGGTAGTAGGTACCGGATTCATGAGGCTGAACCAGATGAGGATAGACATACAAAAAGGCACCATAGTAGCCAAAGGAAAGGATTGAAACATCAGAGCAGGGACAACAGTAAGGTAACTGATAAATCTGAATCCGGCAAAGATAGAGACCATGAAGAGTATTCTGATGTGGATTGGGATACTACGAGTAGGGACAATGAAAAGCAGCATGACAGCAAAGGAAAGAACTCACATAAGAGGAATGAGGATAGTAGGTACCAGATTGATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAAGCACCTTAGTAGCCAAATGAAAGAATCTAGACATCAAAGCGGGGACAGCTGTCACGGAATCGATGAATCTGACAAAGATAGAGGAGAGATGGGAGCACAACATGATTACTCTAGGAAAAGCTCGAGACACAAAAGATCTGATCTTCGAGACTACTGTGAAGAGTATGAAAACGAAAATGATAAAGTTGATGGGGGTTGGTCTCAGAGAGACAGTGACCGACGAGCACATCATCACAAAAAGAAGAGATTGAAATACCAGAAGAAATTGGATTCCACCAATGGAGAGTTGTCTTGCAAGAACCCAAGCGAAGACAGACAAGAACAAAGCAAAGGAAGTGACAAACACTTATAA

Protein sequence

>MsaT005977.1

MWSNRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRLLLEQQEAERIERDRIAFEEREKAWIIKQQQQRDLEQEEEQELSQRDDIKEEDDKSELEEEEEDDDDDSPPEIIWLGNEIIIKKKKKKKLNPNPLLLLHNHQHQHHDNRPTSNPFPPESPSQPLHNVAQQLPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPDKSCTLLIKNMYNGPGLAWEQDQGLEYTDEEVERCFEEFYEDVHTEFLKVGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSTLKHSSNILETDSDRYHSRRSRSREMGQLNGSRSSRRKQEDERKQRTPDEEWNTNFKYNHKRKYRNKTSDSDSDREGLEEVDRKKYHEHTRKSSFNRNKDDNSRKHEEYSDVDRVTINRDNEKQHDRKGRNSQKWIWDSSRSWIHEAGCDEDRDGDGRRHHSSRRKGSRHQRRDSSNVTDESESDKDRGHEEYSDVDWDTMSRDNEKQHGSKGRNSQKGNSDSRYRIYEAGSDEDRHRKRHHGSQRKGSRHRSRDSSNVADESESDKDGGHEYSDVDWDTMSRDNEKQHDSKGRNSQKWSWGSRYRIHEAEPDEDRHTKRHHSSQRKGLKHQSRDNSKVTDKSESGKDRDHEEYSDVDWDTTSRDNEKQHDSKGKNSHKRNEDSRYQIDEAGSDEDRHRKKHLSSQMKESRHQSGDSCHGIDESDKDRGEMGAQHDYSRKSSRHKRSDLRDYCEEYENENDKVDGGWSQRDSDRRAHHHKKKRLKYQKKLDSTNGELSCKNPSEDRQEQSKGSDKHL*