AlfalfaGEDB | MsaG005978

M. sativa ssp. caerulea / MsaG005978

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005978	XP_003539386.1	70.198	708	152	10	1	653	1	704	0.0	957

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005978	sp\|F4I114\|Y1960_ARATH	58.909	623	214	13	34	647	117	706	0.0	663

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005978	tr\|A0A3Q7XUI0\|A0A3Q7XUI0_CICAR	69.179	743	121	12	1	641	813	1549	0.0	968

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG005978	MtrunA17_Chr2g0276911	91.534	378	27	2	285	661	95	468	0.0	708
MsaG005978	MtrunA17_Chr2g0276911	90.476	42	4	0	46	87	33	74	1.73e-18	89.0
MsaG005978	MtrunA17_Chr2g0317501	54.432	643	233	13	41	652	95	708	0.0	660
MsaG005978	MtrunA17_Chr2g0286421	65.403	422	135	5	46	458	68	487	0.0	572
MsaG005978	MtrunA17_Chr7g0273601	57.317	492	176	7	1	458	1	492	0.0	570
MsaG005978	MtrunA17_Chr4g0066691	58.212	481	166	7	46	518	70	523	0.0	559
MsaG005978	MtrunA17_Chr5g0396361	48.510	604	232	12	36	633	93	623	0.0	554
MsaG005978	MtrunA17_Chr3g0131861	64.146	410	139	4	56	457	73	482	0.0	553
MsaG005978	MtrunA17_Chr2g0324461	48.191	608	256	12	50	634	111	682	0.0	538
MsaG005978	MtrunA17_Chr8g0385971	56.632	475	188	6	1	457	1	475	0.0	532

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG005978	AT1G09600.1	58.909	623	214	13	34	647	117	706	663
MsaG005978	AT1G53050.2	54.750	621	241	12	43	653	97	687	647
MsaG005978	AT1G53050.1	54.750	621	241	12	43	653	97	687	647
MsaG005978	AT1G57700.1	57.630	616	222	8	41	652	107	687	646
MsaG005978	AT1G71530.1	50.163	614	221	11	27	636	99	631	585
MsaG005978	AT4G10010.2	51.078	603	208	11	40	636	116	637	580
MsaG005978	AT1G54610.1	61.722	418	152	4	49	458	87	504	559
MsaG005978	AT1G54610.3	61.722	418	152	4	49	458	87	504	559
MsaG005978	AT1G54610.2	61.722	418	152	4	49	458	87	504	559
MsaG005978	AT1G33770.1	61.429	420	160	1	2	419	63	482	530

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATTCTTATTGGCA+TGG	0.528391	2:+232680	MsaT005978.1:CDS
AAAGAGGAAGCTGCTCTTTC+TGG	0.105418	2:+232617	MsaT005978.1:CDS
AAATAAAGGACATGTAAGAC+AGG	0.527516	2:+232238	MsaT005978.1:CDS
AAATACAAACCTGAAGAGGA+AGG	0.598146	2:+232482	MsaT005978.1:CDS
AACTCTCATTAATGGCGAAA+GGG	0.447346	2:+229266	MsaT005978.1:CDS
AAGAAAGACTTCCATCTATT+CGG	0.415662	2:+232884	MsaT005978.1:CDS
AAGAGGCTCAGTGCCGATGA+AGG	0.540492	2:-231511	None:intergenic
AAGGCCAGCCAGCAACAACA+AGG	0.594433	2:-229293	None:intergenic
AAGGTATAAGGTACCAGAAA+GGG	0.496715	2:-229661	None:intergenic
AATCTGAAGATTGCTGATTT+TGG	0.101501	2:+230231	MsaT005978.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	229141	233294	229141	ID=MsaG005978
Chr2	mRNA	229141	233294	229141	ID=MsaT005978.1;Parent=MsaG005978
Chr2	exon	229141	229399	229141	ID=MsaT005978.1.exon1;Parent=MsaT005978.1
Chr2	CDS	229141	229399	229141	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	229481	229755	229481	ID=MsaT005978.1.exon2;Parent=MsaT005978.1
Chr2	CDS	229481	229755	229481	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	230123	230440	230123	ID=MsaT005978.1.exon3;Parent=MsaT005978.1
Chr2	CDS	230123	230440	230123	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	231370	231597	231370	ID=MsaT005978.1.exon4;Parent=MsaT005978.1
Chr2	CDS	231370	231597	231370	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	231683	231783	231683	ID=MsaT005978.1.exon5;Parent=MsaT005978.1
Chr2	CDS	231683	231783	231683	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	232226	232340	232226	ID=MsaT005978.1.exon6;Parent=MsaT005978.1
Chr2	CDS	232226	232340	232226	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	232446	232922	232446	ID=MsaT005978.1.exon7;Parent=MsaT005978.1
Chr2	CDS	232446	232922	232446	ID=cds.MsaT005978.1;Parent=MsaT005978.1
Chr2	exon	233082	233294	233082	ID=MsaT005978.1.exon8;Parent=MsaT005978.1
Chr2	CDS	233082	233294	233082	ID=cds.MsaT005978.1;Parent=MsaT005978.1

Gene Sequence

>MsaT005978.1

ATGGGTTGTATATGCTCTAAACCCAAATCCTCTGATCAAAATCATTTGATTGTCAATGATGCCACTACTTCATACCTCATTTCTTCTTCTGATCAAGAACAACAGGAAAAGAAGATGATCATTACAACTCTCATTAATGGCGAAAGGGGATCCCTTGTTGTTGCTGGCTGGCCTTCTTGGCTCACTGCTGTTGCCGCTGAAGCCATCGCTGGCTGGATACCTCGCACACCTGACTCTTTTCACAAATTGAACAGGGCAGGAACTTACAGCACTGTTTACAGAGCTCGCGATCTTCAAACTAACAAAATTGTTGCTTTGAAGAAAGTTAAATTCGCTAATATGGATCCTCAAAGTGTCCGTTTTATGGCTAGAGAAATTATTCTCCTCAGGAGGCTTCATCATCCAAATGTCATCAAACTTGAAGGGATCATAACTTCAACCCTTTCTGGTACCTTATACCTTATTTTTGAATATATGGACCATGATCTTACTGGCCTTACAACAATGCCCGCCAACAAATTTACTGAATCACAGATCAAGTGTTATATGCTACAGCTTCTCTGTGGTCTTGAACATTGTCACAGTCGCGGTGTTATGCATCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGCTGATTTTGGGCTTGCAACTCTGTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGCTTCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAAATGTTCACCAGGAAGCCTATAATGCCTGGACGAACCGAGGTGGAGCAACTGCATAAAATCTTCAAGCTCTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACTGCATGCGACAATTTTTAAACCTCAACAACCTTATAAACGTGTTGTTTCTGAGACATTCAAGAACTTTCCTTCATCGGCACTGAGCCTCTTGGAAGTCTTACTTGCTATTGAACCAAGAGACCGAGGAACTGCATCTTCAGCACTTCAGAATGAGTTCTTCACATCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCAAGAAGACGACGAGCAGCAAATAAAGGACATGTAAGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAAGTTGTGCCAGCACCTGATGCTAATTTTGAGATTCAGTCATCAATAGAGAGACAAGGGCAGTGTAATTCAAAATGCATTAGTGAGAAATACAAACCTGAAGAGGAAGGAGGCTATGGCTTCCCTCTTGAACCTGCAAAGTTAAGATCACGTAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCATATGGATCGTCGCGCAATATGAATTTGAAAGAGGAAGCTGCTCTTTCTGGCCCTGATCGTGTTTTCACATCAAGAAAATTTGAATTGAGAAAACAAAATTCTTATTGGCATGGTAGTACTGCACAATTGTCAAGATTTTCTAATTCAGTTGCAATTCGAGGTGATTCACGACTTGATATGAGTGGAGACTGTAGTTTGAATTCACAGTGGCTAGAGGATCAGTTTGATACGAGATATGGTCATTTGGATGATGGTGAGTCGAATCAATTACTGGATGGAACCAAACATTCACGCAAGAAAGACTTCCATCTATTCGGAAAGGATCATGCCATGGGCTGTGCTCCCAAAAATGGCCACATGCTCAACTATTCTGGACCACTTCTGCCTCCAGAGGATAATCTTGAAGAGATCCTTAAGGAGCATGAAAGACAGATCCAACAAGCTGTGCGCAAAGCTCGTCTGGTCAAGGAAAATAAAAAGGCTGACAGTGAGAATGGCCAGAATGAGTCACTATTTCACTTTCACCAAATGAGAAGTGGCAAGTGA

Protein sequence

>MsaT005978.1

MGCICSKPKSSDQNHLIVNDATTSYLISSSDQEQQEKKMIITTLINGERGSLVVAGWPSWLTAVAAEAIAGWIPRTPDSFHKLNRAGTYSTVYRARDLQTNKIVALKKVKFANMDPQSVRFMAREIILLRRLHHPNVIKLEGIITSTLSGTLYLIFEYMDHDLTGLTTMPANKFTESQIKCYMLQLLCGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGASVDLWSAGCILAEMFTRKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLLHATIFKPQQPYKRVVSETFKNFPSSALSLLEVLLAIEPRDRGTASSALQNEFFTSKPLPCDPSTLPKYPPSKEFDAKLREEEARRRRAANKGHVRQESVGRNFKESKVVPAPDANFEIQSSIERQGQCNSKCISEKYKPEEEGGYGFPLEPAKLRSRNIFSHSGQSMHPSAYGSSRNMNLKEEAALSGPDRVFTSRKFELRKQNSYWHGSTAQLSRFSNSVAIRGDSRLDMSGDCSLNSQWLEDQFDTRYGHLDDGESNQLLDGTKHSRKKDFHLFGKDHAMGCAPKNGHMLNYSGPLLPPEDNLEEILKEHERQIQQAVRKARLVKENKKADSENGQNESLFHFHQMRSGK*