AlfalfaGEDB | MsaG006064

M. sativa ssp. caerulea / MsaG006064

KEGG: -
GO: GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006064	AES63272.2	87.379	103	10	1	63	162	1	103	1.41e-45	155

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006064	sp\|Q9LT45\|GAT29_ARATH	61.538	39	15	0	101	139	159	197	6.90e-12	63.9

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006064	tr\|G7IPG2\|G7IPG2_MEDTR	87.379	103	10	1	63	162	1	103	6.72e-46	155

TFs/TRs:

Gene ID	Type	Classification
MsaG006064	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG001131	MsaG006064	0.813927	3.445980e-51	6.484341e-49
MsaG004629	MsaG006064	0.838675	4.596374e-57	1.721509e-54
MsaG006064	MsaG007196	0.820401	1.226072e-52	2.725397e-50
MsaG006064	MsaG008878	0.818443	3.409687e-52	7.198749e-50
MsaG006064	MsaG015874	0.813113	5.194241e-51	9.576294e-49
MsaG006064	MsaG015960	0.811250	1.318385e-50	2.321204e-48
MsaG006064	MsaG017458	0.804996	2.790764e-49	4.230604e-47
MsaG006064	MsaG017528	0.800965	1.883622e-48	2.602814e-46
MsaG006064	MsaG020695	0.810369	2.040529e-50	3.516212e-48
MsaG006064	MsaG021888	0.802895	7.593278e-49	1.096401e-46
MsaG006064	MsaG027994	0.811649	1.080842e-50	1.921658e-48
MsaG006064	MsaG028672	0.810944	1.534828e-50	2.682061e-48
MsaG006064	MsaG029076	0.818056	4.169393e-52	8.714911e-50
MsaG006064	MsaG029284	0.818335	3.606384e-52	7.592664e-50
MsaG006064	MsaG029502	0.808266	5.736294e-50	9.395084e-48
MsaG006064	MsaG030640	0.811555	1.132964e-50	2.009693e-48
MsaG006064	MsaG030818	0.802959	7.367043e-49	1.065301e-46
MsaG006064	MsaG033763	0.825257	9.183150e-54	2.326330e-51
MsaG006064	MsaG035131	0.818250	3.769137e-52	7.917966e-50
MsaG006064	MsaG035673	0.807466	8.471276e-50	1.361025e-47
MsaG006064	MsaG038311	0.819294	2.189687e-52	4.727250e-50
MsaG006064	MsaG044265	0.856787	4.937241e-62	3.403881e-59
MsaG006064	MsaG045606	0.806469	1.373832e-49	2.155914e-47
MsaG006064	MsaG022641	0.807630	7.821324e-50	1.261522e-47
MsaG006064	MsaG019843	0.805098	2.657244e-49	4.037761e-47
MsaG006064	MsaG037042	0.807440	8.580392e-50	1.377685e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006064	MtrunA17_Chr7g0253101	36.036	111	54	5	35	133	115	220	2.41e-11	60.1
MsaG006064	MtrunA17_Chr8g0340401	53.704	54	21	2	96	145	218	271	4.33e-11	60.1
MsaG006064	MtrunA17_Chr7g0271861	66.667	36	10	1	100	135	23	56	5.54e-11	57.0
MsaG006064	MtrunA17_Chr3g0140331	60.465	43	16	1	104	145	256	298	6.93e-11	59.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006064	AT3G20750.1	61.538	39	15	0	101	139	159	197	7.01e-13	63.9
MsaG006064	AT5G25830.1	42.466	73	34	2	81	145	192	264	1.72e-11	61.6
MsaG006064	AT4G32890.1	73.333	30	8	0	104	133	200	229	2.87e-11	60.8

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATTGCTGCTGTCTCAATTT+TGG	0.174192	2:+1176973	MsaT006064.1:CDS
CTTCTTCTTCAACTTCCTAA+TGG	0.279260	2:+1177986	MsaT006064.1:CDS
ACGTCCTCCTCCTCAAAATA+TGG	0.327173	2:-1175995	None:intergenic
TATGTGGCGCTCTGGACCTA+TGG	0.393114	2:+1177159	MsaT006064.1:CDS
GGTTGGACATTGTTTGCAAT+TGG	0.397971	2:-1176935	None:intergenic
GCAATTGGAGCAGCATCAAT+TGG	0.414015	2:-1176956	None:intergenic
CGAGATGTCCCTGCTGCCTC+AGG	0.421876	2:+1177928	MsaT006064.1:CDS
GGATCTCCTCCCATGATTCC+AGG	0.423283	2:-1177964	None:intergenic
TGTCCCACCACCTGGAATCA+TGG	0.424311	2:+1177954	MsaT006064.1:CDS
AAAATTGAGACAGCAGCAAT+TGG	0.438976	2:-1176971	None:intergenic
AACACTCCTATGTGGCGCTC+TGG	0.449276	2:+1177151	MsaT006064.1:CDS
TCAAGAAATGCCATTGGGCG+TGG	0.452536	2:+1177045	MsaT006064.1:CDS
TCAGGTTCTGTCCCACCACC+TGG	0.454678	2:+1177946	MsaT006064.1:CDS
CCTCCCATGATTCCAGGTGG+TGG	0.456756	2:-1177958	None:intergenic
CATTTACTACAAGAAACATA+TGG	0.481434	2:+1177900	MsaT006064.1:CDS
GGGACAGAACCTGAGGCAGC+AGG	0.482176	2:-1177937	None:intergenic
ATGTGGCGCTCTGGACCTAT+GGG	0.485189	2:+1177160	MsaT006064.1:CDS
GAATTCAGACACTGAAAGTC+AGG	0.494441	2:+1176018	MsaT006064.1:CDS
TTTCTTGATCGGCACGGACA+TGG	0.499473	2:-1177030	None:intergenic
GTCCCACCACCTGGAATCAT+GGG	0.504732	2:+1177955	MsaT006064.1:CDS
TTGGAGCAGCATCAATTGGT+TGG	0.505822	2:-1176952	None:intergenic
CAGAAGGTGGTCGGATCAGA+TGG	0.507419	2:-1177103	None:intergenic
AAATTTACCTTTGGACCCAT+AGG	0.510533	2:-1177175	None:intergenic
CTCCCATGATTCCAGGTGGT+GGG	0.519420	2:-1177957	None:intergenic
GCCCAATGGCATTTCTTGAT+CGG	0.524113	2:-1177041	None:intergenic
GCCGATCAAGAAATGCCATT+GGG	0.532200	2:+1177040	MsaT006064.1:CDS
CATTAGGAAGTTGAAGAAGA+AGG	0.548858	2:-1177985	None:intergenic
TGCCGATCAAGAAATGCCAT+TGG	0.553175	2:+1177039	MsaT006064.1:CDS
CGACGTCGTCCCACGCCCAA+TGG	0.553398	2:-1177055	None:intergenic
CTCTGGACCTATGGGTCCAA+AGG	0.554114	2:+1177168	MsaT006064.1:CDS
GCAATGAAAATTTGTGCAGA+AGG	0.580559	2:-1177119	None:intergenic
CAAGAAATGCCATTGGGCGT+GGG	0.597462	2:+1177046	MsaT006064.1:CDS
GGACAGAACCTGAGGCAGCA+GGG	0.617193	2:-1177936	None:intergenic
AAAGAATCAGTACAATACAT+TGG	0.618095	2:-1177007	None:intergenic
ATGGCATTTCTTGATCGGCA+CGG	0.620469	2:-1177036	None:intergenic
AAATTTGTGCAGAAGGTGGT+CGG	0.623430	2:-1177112	None:intergenic
ATGAAAATTTGTGCAGAAGG+TGG	0.644289	2:-1177116	None:intergenic
AGACAAGAAACACTCCTATG+TGG	0.647405	2:+1177143	MsaT006064.1:CDS
ATAGGTCCAGAGCGCCACAT+AGG	0.654562	2:-1177157	None:intergenic
CAGACTTTGTGCAATGCGTG+TGG	0.657380	2:+1177877	MsaT006064.1:intron
AGGTGGTGGGACAGAACCTG+AGG	0.657762	2:-1177944	None:intergenic
CAGATGGACGAGCTCGTCCG+CGG	0.666213	2:-1177087	None:intergenic
CCACCACCTGGAATCATGGG+AGG	0.682520	2:+1177958	MsaT006064.1:CDS
TCTCCTCCCATGATTCCAGG+TGG	0.693154	2:-1177961	None:intergenic
CGACGTCGTTACATCAGCCG+CGG	0.703348	2:+1177070	MsaT006064.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	1175974	1178005	1175974	ID=MsaG006064
Chr2	mRNA	1175974	1178005	1175974	ID=MsaT006064.1;Parent=MsaG006064
Chr2	exon	1175974	1176081	1175974	ID=MsaT006064.1.exon1;Parent=MsaT006064.1
Chr2	CDS	1175974	1176081	1175974	ID=cds.MsaT006064.1;Parent=MsaT006064.1
Chr2	exon	1176932	1177189	1176932	ID=MsaT006064.1.exon2;Parent=MsaT006064.1
Chr2	CDS	1176932	1177189	1176932	ID=cds.MsaT006064.1;Parent=MsaT006064.1
Chr2	exon	1177880	1178005	1177880	ID=MsaT006064.1.exon3;Parent=MsaT006064.1
Chr2	CDS	1177880	1178005	1177880	ID=cds.MsaT006064.1;Parent=MsaT006064.1

Gene Sequence

>MsaT006064.1

ATGGACTTTGACTTAAACATGCCATATTTTGAGGAGGAGGACGTGAATTCAGACACTGAAAGTCAGGTTTCATCACACATTCAGAGCAATACTGAAAATATCCCTAAAGATCCAATTGCAAACAATGTCCAACCAATTGATGCTGCTCCAATTGCTGCTGTCTCAATTTTGGTTGATGCTCAACCAATGTATTGTACTGATTCTTTCCATGTCCGTGCCGATCAAGAAATGCCATTGGGCGTGGGACGACGTCGTTACATCAGCCGCGGACGAGCTCGTCCATCTGATCCGACCACCTTCTGCACAAATTTTCATTGCAAGACAAGAAACACTCCTATGTGGCGCTCTGGACCTATGGGTCCAAAGACTTTGTGCAATGCGTGTGGCATTTACTACAAGAAACATATGGTTCGTCGAGATGTCCCTGCTGCCTCAGGTTCTGTCCCACCACCTGGAATCATGGGAGGAGATCCTTCTTCTTCAACTTCCTAA

Protein sequence

>MsaT006064.1

MDFDLNMPYFEEEDVNSDTESQVSSHIQSNTENIPKDPIANNVQPIDAAPIAAVSILVDAQPMYCTDSFHVRADQEMPLGVGRRRYISRGRARPSDPTTFCTNFHCKTRNTPMWRSGPMGPKTLCNACGIYYKKHMVRRDVPAASGSVPPPGIMGGDPSSSTS*