Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006083 | XP_003592973.1 | 88.273 | 469 | 32 | 4 | 1 | 464 | 1 | 451 | 0.0 | 835 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006083 | sp|Q84WU6|ARFQ_ARATH | 37.500 | 408 | 198 | 11 | 10 | 370 | 16 | 413 | 9.39e-84 | 272 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006083 | tr|G7INP6|G7INP6_MEDTR | 88.273 | 469 | 32 | 4 | 1 | 464 | 1 | 451 | 0.0 | 835 |
Gene ID | Type | Classification |
---|---|---|
MsaG006083 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsaG004410 | MsaG006083 | 0.814928 | 2.075052e-51 | 4.003989e-49 |
MsaG006083 | MsaG006225 | 0.806817 | 1.160870e-49 | 1.836603e-47 |
MsaG006083 | MsaG006884 | 0.802805 | 7.921563e-49 | 1.141446e-46 |
MsaG006083 | MsaG009269 | 0.805208 | 2.521417e-49 | 3.841124e-47 |
MsaG006083 | MsaG010372 | 0.801626 | 1.381357e-48 | 1.937595e-46 |
MsaG006083 | MsaG011014 | 0.802582 | 8.804885e-49 | 1.262290e-46 |
MsaG006083 | MsaG011219 | 0.819765 | 1.711346e-52 | 3.740342e-50 |
MsaG006083 | MsaG012203 | 0.801657 | 1.361593e-48 | 1.911201e-46 |
MsaG006083 | MsaG012553 | 0.839920 | 2.193272e-57 | 8.540705e-55 |
MsaG006083 | MsaG021062 | 0.800241 | 2.641532e-48 | 3.590945e-46 |
MsaG006083 | MsaG028020 | 0.813869 | 3.549987e-51 | 6.670155e-49 |
MsaG006083 | MsaG036509 | 0.824775 | 1.191720e-53 | 2.979360e-51 |
MsaG006083 | MsaG040381 | 0.812176 | 8.311368e-51 | 1.496938e-48 |
MsaG006083 | MsaG019048 | 0.808601 | 4.869753e-50 | 8.040152e-48 |
MsaG006083 | MsaG027627 | 0.804981 | 2.811340e-49 | 4.260237e-47 |
MsaG006083 | MsaG032120 | 0.802490 | 9.195945e-49 | 1.315567e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006083 | MtrunA17_Chr2g0277461 | 88.273 | 469 | 32 | 4 | 1 | 464 | 1 | 451 | 0.0 | 835 |
MsaG006083 | MtrunA17_Chr2g0277531 | 71.835 | 316 | 73 | 6 | 7 | 317 | 14 | 318 | 6.64e-160 | 455 |
MsaG006083 | MtrunA17_Chr5g0424931 | 45.731 | 527 | 208 | 13 | 7 | 466 | 13 | 528 | 1.33e-135 | 401 |
MsaG006083 | MtrunA17_Chr1g0178011 | 50.109 | 459 | 197 | 10 | 6 | 455 | 5 | 440 | 1.64e-134 | 395 |
MsaG006083 | MtrunA17_Chr5g0417281 | 43.726 | 526 | 224 | 13 | 3 | 466 | 1 | 516 | 6.62e-121 | 363 |
MsaG006083 | MtrunA17_Chr5g0436761 | 43.376 | 468 | 239 | 13 | 5 | 459 | 4 | 458 | 1.48e-107 | 327 |
MsaG006083 | MtrunA17_Chr5g0417211 | 42.857 | 469 | 194 | 12 | 5 | 465 | 4 | 406 | 2.02e-105 | 319 |
MsaG006083 | MtrunA17_Chr2g0289221 | 52.830 | 318 | 135 | 6 | 6 | 317 | 13 | 321 | 6.86e-103 | 311 |
MsaG006083 | MtrunA17_Chr3g0115271 | 35.484 | 558 | 253 | 16 | 5 | 465 | 11 | 558 | 3.66e-94 | 296 |
MsaG006083 | MtrunA17_Chr5g0424801 | 45.326 | 353 | 163 | 13 | 7 | 344 | 6 | 343 | 1.70e-89 | 277 |
MsaG006083 | MtrunA17_Chr5g0425261 | 45.480 | 354 | 163 | 13 | 7 | 346 | 6 | 343 | 1.79e-89 | 277 |
MsaG006083 | MtrunA17_Chr5g0424741 | 41.627 | 418 | 175 | 15 | 6 | 363 | 5 | 413 | 6.18e-81 | 260 |
MsaG006083 | MtrunA17_Chr2g0326761 | 39.401 | 401 | 178 | 12 | 12 | 358 | 10 | 399 | 2.59e-80 | 263 |
MsaG006083 | MtrunA17_Chr4g0028971 | 36.983 | 411 | 190 | 11 | 4 | 355 | 3 | 403 | 1.62e-76 | 253 |
MsaG006083 | MtrunA17_Chr1g0181211 | 35.323 | 402 | 190 | 11 | 12 | 353 | 26 | 417 | 2.29e-74 | 247 |
MsaG006083 | MtrunA17_Chr1g0199681 | 38.287 | 397 | 185 | 13 | 13 | 358 | 94 | 481 | 1.29e-73 | 245 |
MsaG006083 | MtrunA17_Chr7g0264171 | 35.507 | 414 | 191 | 15 | 10 | 358 | 28 | 430 | 2.66e-68 | 229 |
MsaG006083 | MtrunA17_Chr7g0264161 | 39.617 | 313 | 158 | 12 | 23 | 317 | 2 | 301 | 1.66e-59 | 197 |
MsaG006083 | MtrunA17_Chr5g0425661 | 49.756 | 205 | 92 | 4 | 13 | 214 | 37 | 233 | 1.66e-56 | 187 |
MsaG006083 | MtrunA17_Chr8g0385791 | 32.398 | 392 | 247 | 9 | 13 | 391 | 59 | 445 | 8.80e-51 | 184 |
MsaG006083 | MtrunA17_Chr4g0070181 | 33.333 | 354 | 209 | 10 | 10 | 348 | 20 | 361 | 3.08e-48 | 178 |
MsaG006083 | MtrunA17_Chr8g0376771 | 33.143 | 350 | 218 | 8 | 13 | 349 | 23 | 369 | 8.95e-48 | 176 |
MsaG006083 | MtrunA17_Chr2g0282961 | 30.747 | 348 | 205 | 9 | 13 | 337 | 53 | 387 | 1.38e-47 | 173 |
MsaG006083 | MtrunA17_Chr2g0301251 | 32.768 | 354 | 211 | 10 | 10 | 348 | 20 | 361 | 3.73e-47 | 175 |
MsaG006083 | MtrunA17_Chr2g0285461 | 32.386 | 352 | 219 | 8 | 13 | 349 | 23 | 370 | 6.23e-47 | 174 |
MsaG006083 | MtrunA17_Chr3g0109391 | 31.579 | 380 | 240 | 8 | 13 | 379 | 26 | 398 | 1.31e-46 | 172 |
MsaG006083 | MtrunA17_Chr5g0433301 | 31.714 | 350 | 224 | 7 | 13 | 349 | 24 | 371 | 1.19e-45 | 170 |
MsaG006083 | MtrunA17_Chr1g0156321 | 33.529 | 340 | 207 | 9 | 13 | 338 | 43 | 377 | 3.49e-45 | 169 |
MsaG006083 | MtrunA17_Chr2g0276781 | 32.222 | 360 | 219 | 9 | 13 | 356 | 23 | 373 | 7.56e-45 | 166 |
MsaG006083 | MtrunA17_Chr4g0046371 | 32.044 | 362 | 196 | 11 | 8 | 337 | 33 | 376 | 4.74e-44 | 164 |
MsaG006083 | MtrunA17_Chr8g0389081 | 32.479 | 351 | 217 | 10 | 5 | 340 | 24 | 369 | 3.21e-43 | 163 |
MsaG006083 | MtrunA17_Chr4g0009751 | 30.055 | 366 | 237 | 9 | 13 | 365 | 19 | 378 | 9.27e-42 | 157 |
MsaG006083 | MtrunA17_Chr8g0346711 | 30.523 | 344 | 218 | 9 | 13 | 343 | 29 | 364 | 2.64e-39 | 150 |
MsaG006083 | MtrunA17_Chr7g0239061 | 28.382 | 377 | 244 | 9 | 13 | 373 | 14 | 380 | 3.43e-39 | 150 |
MsaG006083 | MtrunA17_Chr2g0326281 | 30.278 | 360 | 212 | 8 | 13 | 337 | 56 | 411 | 9.68e-38 | 147 |
MsaG006083 | MtrunA17_Chr4g0029671 | 30.435 | 368 | 228 | 10 | 13 | 356 | 54 | 417 | 9.82e-38 | 146 |
MsaG006083 | MtrunA17_Chr5g0419861 | 58.333 | 120 | 40 | 6 | 51 | 165 | 9 | 123 | 5.63e-33 | 121 |
MsaG006083 | MtrunA17_Chr5g0425651 | 48.780 | 123 | 51 | 6 | 239 | 350 | 1 | 122 | 1.69e-24 | 98.2 |
MsaG006083 | MtrunA17_Chr5g0424791 | 41.830 | 153 | 71 | 5 | 66 | 214 | 13 | 151 | 1.32e-23 | 96.7 |
MsaG006083 | MtrunA17_Chr8g0356211 | 27.928 | 222 | 136 | 8 | 131 | 337 | 8 | 220 | 4.73e-17 | 82.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006083 | AT1G77850.1 | 37.500 | 408 | 198 | 11 | 10 | 370 | 16 | 413 | 9.55e-85 | 272 |
MsaG006083 | AT1G77850.2 | 37.408 | 409 | 199 | 11 | 9 | 370 | 15 | 413 | 1.57e-84 | 271 |
MsaG006083 | AT4G30080.1 | 37.406 | 401 | 186 | 13 | 12 | 358 | 18 | 407 | 4.51e-74 | 246 |
MsaG006083 | AT2G28350.2 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 1.82e-72 | 241 |
MsaG006083 | AT2G28350.1 | 35.749 | 414 | 195 | 12 | 5 | 358 | 2 | 404 | 1.92e-72 | 242 |
MsaG006083 | AT4G23980.1 | 33.433 | 335 | 209 | 6 | 13 | 337 | 12 | 342 | 4.41e-49 | 178 |
MsaG006083 | AT4G23980.2 | 33.433 | 335 | 209 | 6 | 13 | 337 | 12 | 342 | 4.52e-49 | 178 |
MsaG006083 | AT5G37020.2 | 31.536 | 371 | 239 | 7 | 13 | 370 | 22 | 390 | 7.49e-48 | 176 |
MsaG006083 | AT5G37020.1 | 31.536 | 371 | 239 | 7 | 13 | 370 | 22 | 390 | 7.84e-48 | 176 |
MsaG006083 | AT5G20730.1 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 8.38e-47 | 174 |
MsaG006083 | AT1G30330.1 | 33.144 | 353 | 215 | 9 | 13 | 349 | 23 | 370 | 9.00e-47 | 174 |
MsaG006083 | AT1G30330.3 | 33.144 | 353 | 215 | 9 | 13 | 349 | 25 | 372 | 1.06e-46 | 174 |
MsaG006083 | AT1G30330.2 | 33.144 | 353 | 215 | 9 | 13 | 349 | 25 | 372 | 1.06e-46 | 174 |
MsaG006083 | AT5G20730.3 | 32.687 | 361 | 217 | 9 | 3 | 348 | 14 | 363 | 1.10e-46 | 174 |
MsaG006083 | AT2G33860.1 | 31.988 | 347 | 202 | 9 | 13 | 337 | 54 | 388 | 1.32e-46 | 171 |
MsaG006083 | AT5G62000.4 | 31.852 | 405 | 256 | 9 | 13 | 403 | 61 | 459 | 1.42e-46 | 173 |
MsaG006083 | AT5G62000.2 | 31.852 | 405 | 256 | 9 | 13 | 403 | 61 | 459 | 1.92e-46 | 172 |
MsaG006083 | AT5G62000.5 | 31.852 | 405 | 256 | 9 | 13 | 403 | 61 | 459 | 1.92e-46 | 172 |
MsaG006083 | AT5G62000.3 | 31.852 | 405 | 256 | 9 | 13 | 403 | 61 | 459 | 1.92e-46 | 172 |
MsaG006083 | AT5G62000.1 | 31.852 | 405 | 256 | 9 | 13 | 403 | 61 | 459 | 1.92e-46 | 172 |
MsaG006083 | AT5G20730.2 | 32.687 | 361 | 216 | 10 | 3 | 348 | 14 | 362 | 3.13e-46 | 172 |
MsaG006083 | AT2G46530.1 | 31.148 | 366 | 230 | 9 | 13 | 364 | 21 | 378 | 6.96e-46 | 168 |
MsaG006083 | AT2G46530.3 | 31.148 | 366 | 230 | 9 | 13 | 364 | 42 | 399 | 9.84e-46 | 168 |
MsaG006083 | AT1G34310.1 | 33.526 | 346 | 199 | 9 | 8 | 337 | 22 | 352 | 2.15e-45 | 167 |
MsaG006083 | AT3G61830.1 | 31.405 | 363 | 219 | 10 | 13 | 356 | 25 | 376 | 1.27e-44 | 165 |
MsaG006083 | AT1G19850.2 | 34.294 | 347 | 202 | 11 | 10 | 338 | 40 | 378 | 2.38e-44 | 167 |
MsaG006083 | AT1G19850.1 | 34.294 | 347 | 202 | 11 | 10 | 338 | 51 | 389 | 2.46e-44 | 167 |
MsaG006083 | AT1G34390.1 | 32.948 | 346 | 199 | 10 | 8 | 337 | 22 | 350 | 3.50e-44 | 164 |
MsaG006083 | AT1G35520.1 | 32.464 | 345 | 214 | 8 | 3 | 337 | 17 | 352 | 4.77e-44 | 163 |
MsaG006083 | AT5G60450.2 | 31.445 | 353 | 212 | 8 | 8 | 337 | 36 | 381 | 1.88e-43 | 163 |
MsaG006083 | AT1G19220.1 | 30.833 | 360 | 220 | 10 | 4 | 348 | 16 | 361 | 2.18e-43 | 164 |
MsaG006083 | AT5G60450.1 | 31.609 | 348 | 208 | 8 | 13 | 337 | 65 | 405 | 4.04e-43 | 162 |
MsaG006083 | AT1G35540.1 | 32.749 | 342 | 207 | 10 | 8 | 337 | 22 | 352 | 1.15e-42 | 159 |
MsaG006083 | AT1G35240.1 | 32.353 | 340 | 211 | 8 | 8 | 337 | 22 | 352 | 3.39e-42 | 158 |
MsaG006083 | AT1G34410.1 | 31.765 | 340 | 213 | 8 | 8 | 337 | 22 | 352 | 1.32e-41 | 157 |
MsaG006083 | AT1G34170.1 | 30.659 | 349 | 221 | 9 | 1 | 337 | 13 | 352 | 2.27e-40 | 152 |
MsaG006083 | AT1G59750.2 | 31.054 | 351 | 223 | 9 | 13 | 350 | 22 | 366 | 4.93e-40 | 153 |
MsaG006083 | AT1G59750.1 | 31.054 | 351 | 223 | 9 | 13 | 350 | 22 | 366 | 5.66e-40 | 152 |
MsaG006083 | AT1G59750.3 | 31.054 | 351 | 223 | 9 | 13 | 350 | 22 | 366 | 5.66e-40 | 152 |
MsaG006083 | AT1G59750.4 | 31.054 | 351 | 223 | 9 | 13 | 350 | 22 | 366 | 7.02e-40 | 152 |
MsaG006083 | AT1G34170.2 | 30.233 | 344 | 203 | 8 | 1 | 337 | 13 | 326 | 4.78e-38 | 145 |
MsaG006083 | AT1G34170.3 | 30.233 | 344 | 203 | 8 | 1 | 337 | 13 | 326 | 1.80e-37 | 144 |
MsaG006083 | AT3G61830.2 | 31.392 | 309 | 182 | 10 | 67 | 356 | 28 | 325 | 5.75e-32 | 129 |
MsaG006083 | AT5G37020.3 | 32.584 | 267 | 165 | 7 | 117 | 370 | 31 | 295 | 2.87e-31 | 127 |
MsaG006083 | AT1G43950.1 | 34.722 | 216 | 120 | 5 | 8 | 217 | 22 | 222 | 2.61e-30 | 117 |
MsaG006083 | AT2G33860.2 | 32.479 | 234 | 141 | 6 | 117 | 337 | 2 | 231 | 6.71e-30 | 121 |
MsaG006083 | AT2G46530.2 | 31.679 | 262 | 164 | 7 | 114 | 364 | 34 | 291 | 3.56e-29 | 120 |
MsaG006083 | ATMG00940.1 | 43.210 | 81 | 42 | 3 | 236 | 313 | 65 | 144 | 9.63e-11 | 60.8 |
Find 100 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TATCTCGTACTTCTAATTTA+TGG | 0.108193 | 2:+1408792 | MsaT006083.1:CDS |
TTTGAATATCGTAGGTTAAT+TGG | 0.128409 | 2:+1410169 | MsaT006083.1:intron |
GATGGTTCAATTATGTTATT+TGG | 0.174464 | 2:+1410528 | MsaT006083.1:CDS |
GCACATGTGTGCCAAATTTC+TGG | 0.215696 | 2:-1407912 | None:intergenic |
CGCATGTGCGTCCAGAAATT+TGG | 0.217939 | 2:+1407901 | MsaT006083.1:CDS |
TTCATCTTAACTCTCATTCT+AGG | 0.234993 | 2:-1408722 | None:intergenic |
GATTGGCAACCTCTTCTTTA+GGG | 0.275578 | 2:-1408178 | None:intergenic |
AGATTGGCAACCTCTTCTTT+AGG | 0.275924 | 2:-1408179 | None:intergenic |
TAATTTATGGCGCATGCTTC+AGG | 0.288610 | 2:+1408805 | MsaT006083.1:CDS |
ATAGAGATTGTCCCTTGATA+TGG | 0.294890 | 2:-1408767 | None:intergenic |
AGATGGACATCGTTGGTTAT+TGG | 0.309930 | 2:-1408149 | None:intergenic |
TTGAATATCGTAGGTTAATT+GGG | 0.314702 | 2:+1410170 | MsaT006083.1:intron |
TGCCCAACTAAGTGATAAAA+AGG | 0.319098 | 2:+1410314 | MsaT006083.1:CDS |
CTGTTCGTTACCGACGTTCA+TGG | 0.320691 | 2:+1408347 | MsaT006083.1:CDS |
TTCATCGCGGTTGTTGAGAT+TGG | 0.361556 | 2:-1408195 | None:intergenic |
GATATATAACATGTTTCTCT+TGG | 0.384809 | 2:-1408408 | None:intergenic |
CAGAGGAGTTCAAAATAATA+TGG | 0.402834 | 2:-1410458 | None:intergenic |
AATGGAATTCCTTTGTTAAG+AGG | 0.404581 | 2:+1408435 | MsaT006083.1:CDS |
TCAACGGGAAAGTTATTTGT+TGG | 0.427846 | 2:+1408500 | MsaT006083.1:CDS |
CAACGGGAAAGTTATTTGTT+GGG | 0.431447 | 2:+1408501 | MsaT006083.1:CDS |
GCAGTTTGTTGCAGCGGCGG+CGG | 0.440577 | 2:+1408538 | MsaT006083.1:CDS |
TGAGTTGGAGAAGGCAGTAA+TGG | 0.441158 | 2:+1408574 | MsaT006083.1:CDS |
TCATCTTAACTCTCATTCTA+GGG | 0.445548 | 2:-1408721 | None:intergenic |
ATGAATCAATGAAGATTCAA+TGG | 0.450458 | 2:+1408696 | MsaT006083.1:CDS |
TGAGTCTTTCATGAAAATAA+CGG | 0.452973 | 2:-1408480 | None:intergenic |
TGAAGACTGATAAATCTTCA+AGG | 0.454632 | 2:+1408741 | MsaT006083.1:CDS |
CAGGTGTTGAGACGAGGATT+CGG | 0.457588 | 2:-1408327 | None:intergenic |
TTGGGATGAATTTCAAGTCT+CGG | 0.458166 | 2:+1410188 | MsaT006083.1:CDS |
ACTATCCTCGAGGGGATGAT+TGG | 0.466368 | 2:+1408642 | MsaT006083.1:CDS |
AGTCAACCCGTGGTGGGTTG+AGG | 0.468552 | 2:+1410224 | MsaT006083.1:CDS |
CACGCAGTTTGTTGCAGCGG+CGG | 0.472211 | 2:+1408535 | MsaT006083.1:CDS |
CATGAACGTCGGTAACGAAC+AGG | 0.475779 | 2:-1408346 | None:intergenic |
ATATATAACATGTTTCTCTT+GGG | 0.481990 | 2:-1408407 | None:intergenic |
TAGAGATTGTCCCTTGATAT+GGG | 0.482488 | 2:-1408766 | None:intergenic |
AAAAGAGTGTGTGTGGGTAA+TGG | 0.489755 | 2:-1408027 | None:intergenic |
TCTCATATCAAGGGAGATGA+TGG | 0.490070 | 2:+1410588 | MsaT006083.1:CDS |
CACCACGGGTTGACTCGTCT+TGG | 0.505317 | 2:-1410216 | None:intergenic |
TGCCGATCCTCACACGGATG+AGG | 0.509768 | 2:+1408103 | MsaT006083.1:CDS |
TCTTCAAGGATCCCATATCA+AGG | 0.512818 | 2:+1408755 | MsaT006083.1:CDS |
AGTTATTTGTTGGGATTCGC+AGG | 0.513561 | 2:+1408510 | MsaT006083.1:CDS |
AAGCCGCGGGAAGACATTAT+CGG | 0.516617 | 2:-1408294 | None:intergenic |
AGTAATGGAGGCATTGAAGT+TGG | 0.517015 | 2:+1408589 | MsaT006083.1:CDS |
GACCTCATCCGTGTGAGGAT+CGG | 0.528604 | 2:-1408105 | None:intergenic |
TTTCACAATTCTCATATCAA+GGG | 0.529587 | 2:+1410579 | MsaT006083.1:CDS |
ACATGTTATATATCTCTGAA+TGG | 0.530162 | 2:+1408417 | MsaT006083.1:CDS |
AGCGGCGGCGGAGCAGAAGA+AGG | 0.532222 | 2:+1408550 | MsaT006083.1:CDS |
AAGAGGAAGAAACTCGTGGC+TGG | 0.538632 | 2:+1408452 | MsaT006083.1:CDS |
GGAGCAGAAGAAGGATGAGT+TGG | 0.543711 | 2:+1408559 | MsaT006083.1:CDS |
GGTGATACTTTATCATGTAT+AGG | 0.550061 | 2:-1410429 | None:intergenic |
TGGGAAACCCGCGGCAGACA+TGG | 0.563883 | 2:-1408388 | None:intergenic |
AAATTGTTTACTATCCTCGA+GGG | 0.568194 | 2:+1408633 | MsaT006083.1:CDS |
CGGCACAAAAGCGAGGTATG+TGG | 0.571206 | 2:-1408274 | None:intergenic |
GAAGAAGGATGAGTTGGAGA+AGG | 0.573545 | 2:+1408565 | MsaT006083.1:CDS |
AGAGTGTGTGTGGGTAATGG+AGG | 0.575190 | 2:-1408024 | None:intergenic |
GAGACGAGGATTCGGCCTCT+AGG | 0.578409 | 2:-1408319 | None:intergenic |
ATTTCTGGACGCACATGCGA+TGG | 0.580120 | 2:-1407897 | None:intergenic |
TCTTGAAAACCCTAAAGAAG+AGG | 0.581476 | 2:+1408169 | MsaT006083.1:CDS |
TCTCCTTGCCGATCCTCACA+CGG | 0.588085 | 2:+1408097 | MsaT006083.1:CDS |
CTTCCCGCGGCTTGACCTAG+AGG | 0.588102 | 2:+1408304 | MsaT006083.1:CDS |
AATGGAGGCATTGAAGTTGG+CGG | 0.590740 | 2:+1408592 | MsaT006083.1:CDS |
AATGAGATCACTTCAACGGA+AGG | 0.592309 | 2:+1410372 | MsaT006083.1:CDS |
GAAGTTGGCGGAAGAGAACA+AGG | 0.600106 | 2:+1408604 | MsaT006083.1:CDS |
GTTCTGATGTTAACAATGCT+CGG | 0.602948 | 2:+1408246 | MsaT006083.1:CDS |
AAATAACCTCAACCCACCAC+GGG | 0.608942 | 2:-1410230 | None:intergenic |
CTTCAAGGATCCCATATCAA+GGG | 0.609531 | 2:+1408756 | MsaT006083.1:CDS |
GAGACGATACAAGGAGTGAA+AGG | 0.609567 | 2:-1408065 | None:intergenic |
TTTGTAGAAAAGAGTGTGTG+TGG | 0.609647 | 2:-1408034 | None:intergenic |
GAACACGCAGTTTGTTGCAG+CGG | 0.616426 | 2:+1408532 | MsaT006083.1:CDS |
GAGTTTCTTCCTCTTAACAA+AGG | 0.617502 | 2:-1408444 | None:intergenic |
TTTGAATGAGATCACTTCAA+CGG | 0.618869 | 2:+1410368 | MsaT006083.1:CDS |
GTGTTGCAATTGTGAGTCGA+AGG | 0.619072 | 2:-1410492 | None:intergenic |
CGGCCTCTAGGTCAAGCCGC+GGG | 0.620797 | 2:-1408307 | None:intergenic |
CGAAGGAAACTTTGTCTCAG+AGG | 0.621557 | 2:-1410475 | None:intergenic |
TCAACAGCTGAGACGATACA+AGG | 0.622390 | 2:-1408074 | None:intergenic |
GAAATTGTTTACTATCCTCG+AGG | 0.624214 | 2:+1408632 | MsaT006083.1:CDS |
GTTGGAGAAGGCAGTAATGG+AGG | 0.624776 | 2:+1408577 | MsaT006083.1:CDS |
ATGAGATCACTTCAACGGAA+GGG | 0.630141 | 2:+1410373 | MsaT006083.1:CDS |
AAAGTTTATTATTTCCCACA+AGG | 0.633656 | 2:+1407969 | MsaT006083.1:CDS |
GTAATGGAGGAAGAAGAAGA+AGG | 0.639327 | 2:-1408011 | None:intergenic |
AACGAACAGGTGTTGAGACG+AGG | 0.644655 | 2:-1408333 | None:intergenic |
CAAGACGAGTCAACCCGTGG+TGG | 0.644679 | 2:+1410217 | MsaT006083.1:CDS |
TTGTGAAAATTGCTTACATG+AGG | 0.646619 | 2:-1410564 | None:intergenic |
AAGACGAGTCAACCCGTGGT+GGG | 0.646955 | 2:+1410218 | MsaT006083.1:CDS |
TCGGCCTCTAGGTCAAGCCG+CGG | 0.648171 | 2:-1408308 | None:intergenic |
GAAATAACCTCAACCCACCA+CGG | 0.649182 | 2:-1410231 | None:intergenic |
TGGTTGCTTCTGAACAGACA+TGG | 0.659994 | 2:-1407877 | None:intergenic |
TGTTTCTCTTGGGAAACCCG+CGG | 0.663878 | 2:-1408397 | None:intergenic |
ACAAAGACCTCATCCGTGTG+AGG | 0.664295 | 2:-1408110 | None:intergenic |
TGTTAAGAGGAAGAAACTCG+TGG | 0.667790 | 2:+1408448 | MsaT006083.1:CDS |
TTCCAAGACGAGTCAACCCG+TGG | 0.669719 | 2:+1410214 | MsaT006083.1:CDS |
TTCAAAATAATATGGCTGTG+AGG | 0.673161 | 2:-1410450 | None:intergenic |
ACATTATCGGCACAAAAGCG+AGG | 0.676914 | 2:-1408281 | None:intergenic |
TTGTAGAAAAGAGTGTGTGT+GGG | 0.681947 | 2:-1408033 | None:intergenic |
GTGCCGATAATGTCTTCCCG+CGG | 0.682542 | 2:+1408291 | MsaT006083.1:CDS |
GATGATGGCTATAAGAGCTG+CGG | 0.682568 | 2:+1410603 | MsaT006083.1:CDS |
TGAAACTTCACCATGAACGT+CGG | 0.683050 | 2:-1408357 | None:intergenic |
AATTGTTTACTATCCTCGAG+GGG | 0.689459 | 2:+1408634 | MsaT006083.1:CDS |
CATCCGTGTGAGGATCGGCA+AGG | 0.710355 | 2:-1408100 | None:intergenic |
TCACACCAATCATCCCCTCG+AGG | 0.748749 | 2:-1408647 | None:intergenic |
CAAAAGAAACAACTTCATCG+CGG | 0.749390 | 2:-1408208 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 1407879 | 1410638 | 1407879 | ID=MsaG006083 |
Chr2 | mRNA | 1407879 | 1410638 | 1407879 | ID=MsaT006083.1;Parent=MsaG006083 |
Chr2 | exon | 1407879 | 1408826 | 1407879 | ID=MsaT006083.1.exon1;Parent=MsaT006083.1 |
Chr2 | CDS | 1407879 | 1408826 | 1407879 | ID=cds.MsaT006083.1;Parent=MsaT006083.1 |
Chr2 | exon | 1410183 | 1410638 | 1410183 | ID=MsaT006083.1.exon2;Parent=MsaT006083.1 |
Chr2 | CDS | 1410183 | 1410638 | 1410183 | ID=cds.MsaT006083.1;Parent=MsaT006083.1 |
Gene Sequence |
Protein sequence |