AlfalfaGEDB | MsaG006124

M. sativa ssp. caerulea / MsaG006124

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006124	XP_020221596.1	71.613	620	149	9	3	617	82	679	0.0	890

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006124	sp\|F4I114\|Y1960_ARATH	56.032	630	220	14	3	622	124	706	0.0	610

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006124	tr\|A0A3Q7XUI0\|A0A3Q7XUI0_CICAR	74.034	647	108	8	11	616	922	1549	0.0	919

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000024	MsaG006124	0.802341	9.863433e-49	1.406304e-46
MsaG000045	MsaG006124	0.819116	2.403352e-52	5.164254e-50
MsaG000117	MsaG006124	0.854644	2.072040e-61	1.321649e-58
MsaG000128	MsaG006124	0.843691	2.238796e-58	9.829450e-56
MsaG000179	MsaG006124	0.817207	6.465957e-52	1.322338e-49
MsaG000207	MsaG006124	0.848641	1.020326e-59	5.279889e-57
MsaG000237	MsaG006124	0.828575	1.491438e-54	4.144959e-52
MsaG000262	MsaG006124	0.809588	2.999731e-50	5.072142e-48
MsaG000274	MsaG006124	0.812186	8.267222e-51	1.489410e-48
MsaG000292	MsaG006124	0.851083	2.134622e-60	1.200920e-57

Showing 1 to 10 of 1,053 entries

Previous1 2 3 4 5…106Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006124	MtrunA17_Chr2g0276911	91.534	378	28	1	259	636	95	468	0.0	712
MsaG006124	MtrunA17_Chr2g0276911	88.095	42	5	0	8	49	33	74	5.16e-17	84.3
MsaG006124	MtrunA17_Chr2g0317501	51.142	657	246	14	3	627	95	708	0.0	611
MsaG006124	MtrunA17_Chr2g0286421	59.862	436	149	8	8	433	68	487	1.18e-179	520
MsaG006124	MtrunA17_Chr7g0273601	59.861	431	151	6	11	433	76	492	6.42e-179	519
MsaG006124	MtrunA17_Chr4g0066691	53.971	491	176	9	12	493	74	523	2.92e-174	507
MsaG006124	MtrunA17_Chr3g0131861	58.726	424	152	6	18	432	73	482	2.80e-172	502
MsaG006124	MtrunA17_Chr5g0396361	45.910	599	231	14	15	608	113	623	1.71e-169	497
MsaG006124	MtrunA17_Chr8g0385971	58.095	420	157	6	20	432	68	475	2.79e-165	484
MsaG006124	MtrunA17_Chr1g0191221	52.869	488	201	8	11	489	91	558	1.84e-163	480

Showing 1 to 10 of 320 entries

Previous1 2 3 4 5…32Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006124	AT1G09600.1	56.032	630	220	14	3	622	124	706	0.0	610
MsaG006124	AT1G53050.2	51.496	635	253	13	5	628	97	687	0.0	599
MsaG006124	AT1G53050.1	51.496	635	253	13	5	628	97	687	0.0	599
MsaG006124	AT1G57700.1	54.444	630	233	9	3	627	107	687	0.0	595
MsaG006124	AT1G71530.1	48.344	604	215	13	14	611	119	631	0.0	528
MsaG006124	AT4G10010.2	46.890	627	229	13	2	620	116	646	7.25e-179	522
MsaG006124	AT1G54610.1	56.481	432	165	6	11	433	87	504	9.01e-174	506
MsaG006124	AT1G54610.3	56.481	432	165	6	11	433	87	504	9.01e-174	506
MsaG006124	AT1G54610.2	56.481	432	165	6	11	433	87	504	9.01e-174	506
MsaG006124	AT5G50860.1	52.137	468	186	10	18	470	90	534	7.33e-163	479

Showing 1 to 10 of 500 entries

Previous1 2 3 4 5…50Next

Find 133 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAATTCTTATTGGCA+TGG	0.528391	2:-1801592	MsaT006124.1:CDS
AAAGAGGAAGCTGCTCTTTC+TGG	0.105418	2:-1801655	MsaT006124.1:CDS
AAATAAAGGACATGTAAGAC+AGG	0.527516	2:-1802034	MsaT006124.1:CDS
AAATACAAACCTGAAGAGGA+AGG	0.598146	2:-1801790	MsaT006124.1:CDS
AACTCTCATTAATGGCGAAA+GGG	0.447346	2:-1805011	MsaT006124.1:CDS
AAGAAAGACTTCCATCTATT+CGG	0.415662	2:-1801388	MsaT006124.1:CDS
AAGAGGCTCAGTGCCGATGA+AGG	0.540492	2:+1802761	None:intergenic
AAGGCAAGCCAGCAACAACA+AGG	0.589796	2:+1804984	None:intergenic
AAGGTATAAGGTACCAGAAA+GGG	0.496715	2:+1804616	None:intergenic
AATCTGAAGATTGCTGATTT+TGG	0.101501	2:-1804042	MsaT006124.1:CDS

Showing 1 to 10 of 133 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	1800979	1805044	1800979	ID=MsaG006124
Chr2	mRNA	1800979	1805044	1800979	ID=MsaT006124.1;Parent=MsaG006124
Chr2	exon	1800979	1801191	1800979	ID=MsaT006124.1.exon8;Parent=MsaT006124.1
Chr2	CDS	1800979	1801191	1800979	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1801372	1801851	1801372	ID=MsaT006124.1.exon7;Parent=MsaT006124.1
Chr2	CDS	1801372	1801851	1801372	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1801954	1802068	1801954	ID=MsaT006124.1.exon6;Parent=MsaT006124.1
Chr2	CDS	1801954	1802068	1801954	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1802511	1802611	1802511	ID=MsaT006124.1.exon5;Parent=MsaT006124.1
Chr2	CDS	1802511	1802611	1802511	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1802697	1802924	1802697	ID=MsaT006124.1.exon4;Parent=MsaT006124.1
Chr2	CDS	1802697	1802924	1802697	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1803855	1804294	1803855	ID=MsaT006124.1.exon3;Parent=MsaT006124.1
Chr2	CDS	1803855	1804294	1803855	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1804630	1804818	1804630	ID=MsaT006124.1.exon2;Parent=MsaT006124.1
Chr2	CDS	1804630	1804818	1804630	ID=cds.MsaT006124.1;Parent=MsaT006124.1
Chr2	exon	1804900	1805044	1804900	ID=MsaT006124.1.exon1;Parent=MsaT006124.1
Chr2	CDS	1804900	1805044	1804900	ID=cds.MsaT006124.1;Parent=MsaT006124.1

Gene Sequence

>MsaT006124.1

ATGATCATTACAACTCTCATTAATGGCGAAAGGGGATCCCTTGTTGTTGCTGGCTTGCCTTCTTGGCTCACTGCTGTTGCCGCTGAAGCCATCGCTGGCTGGATACCTCGCACACCTGACTCTTTTCACAAATTGAACAGGGCAGGAACTTACAGCACTGTTTACAGAGCTCGCGATCTTCAAACTAACAAAATTGTTGCTTTGAAGAAAGTTAAATTTGCTAATATGGATCCTCAAAGTGTCCGTTTTATGGCTAGAGAAATTATTCTCCTCAGGAGGCTTCATCATCCAAATGTCATCAAACTTGAAGGGATCATAACTTCAACCCTTTCTGTGGCCATTGCGCTAAGTTTAATGTCTAATGTCTTGTCTAACTTTTCTATTCACTACTTTCCTTTTGCTTCTTTTTATTTTCCCATTGCGTTAATATTTTTTATTTTTTTTTACATGCTGCAGATCAAGTGTTATATGCTACAGCTTCTCTGTGGTCTTGAACATTGTCACAGTCGCGGTGTTATGCATCGTGACATCAAGGGCTCAAATCTTCTGCTTGACAATAATGGCAATCTGAAGATTGCTGATTTTGGGCTTGCAACTCTGTTTCAGCCATCTCAAGGGCAGCCTTTAACAAGTCGTGTAGTAACCTTGTGGTACCGACCACCTGAACTTTTACTTGGAGCTACAGATTATGGAGCTTCTGTGGATTTGTGGAGTGCTGGTTGTATTCTTGCAGAAATGTTCACCAGGAAGCCTATAATGCCTGGACGAACCGAGGTGGAGCAACTGCATAAAATCTTCCAGCTCTGTGGATCTCCTTCTGAAGAATACTGGAAGAAGTCAAAGCTACTGCATGCGACAATTTTTAAACCTCAACAACCTTATAAACGTGTTGTTTCTGAGACATTCAAGAACTTTCCTTCATCGGCACTGAGCCTCTTGGAAGTCTTACTTGCTATTGAACCAAGAGACCGAGGAACTGCATCTTCAGCACTTCAGAATGAGTTCTTCACATCAAAGCCACTTCCTTGTGATCCATCAACTTTGCCAAAGTACCCACCAAGTAAGGAGTTTGATGCCAAACTTCGAGAAGAGGAAGCGAGAAGACGACGAGCAGCAAATAAAGGACATGTAAGACAGGAATCAGTTGGAAGGAATTTTAAAGAGTCTAAAGTTGTGCCAGCACCTGATGCTAATTTTGAGATTCAGTCATCAATAGAGAAGAGACAAGGGCAGTGTAATTCAAAATGCATTAGTGAGAAATACAAACCTGAAGAGGAAGGAGGCTATGGCTTCCCTCTTGAACCTGCAAAGTTAAGATCACGTAATATCTTCTCTCATTCGGGCCAGTCAATGCATCCAAGTGCATATGGATCGTCGCGCAATATGAATTTGAAAGAGGAAGCTGCTCTTTCTGGCCCTGATCGTGTTTTCACATCAAGAAAATTTGAATTGAGAAAACAAAATTCTTATTGGCATGGTAGTACTGCACAATTGTCAAGATTTTCTAATTCAGTTGCAATTCGAGGTGATTCACGACTTGATATGAGTGGAGACTGTAGTTTGAATTCACAGTGGCTAGAGGATCAGTTTGATACGAGATATGGTCATTTGGATGATGGTGAGTCGAATCAATTACTGGATGGAACCAAACATTCACGCAAGAAAGACTTCCATCTATTCGGAAAGGATCATGCCATGGGCTGTGCTCCCAAAAATGGCCACATGCTCAACTATTCTGGACCACTTCTACCTCCAGAGGATAATCTTGAAGAGATCCTTAAGGAGCATGAAAGACAGATCCAACAAGCTGTGCGCAAAGCTCGTCTGGTCAAGGAAAATAAAAAGGCTGACAGTGAGAATGGCCAGAATGAGTCACTATTTCACTTTCACCAAATGAGAAGTGGCAAGTGA

Protein sequence

>MsaT006124.1

MIITTLINGERGSLVVAGLPSWLTAVAAEAIAGWIPRTPDSFHKLNRAGTYSTVYRARDLQTNKIVALKKVKFANMDPQSVRFMAREIILLRRLHHPNVIKLEGIITSTLSVAIALSLMSNVLSNFSIHYFPFASFYFPIALIFFIFFYMLQIKCYMLQLLCGLEHCHSRGVMHRDIKGSNLLLDNNGNLKIADFGLATLFQPSQGQPLTSRVVTLWYRPPELLLGATDYGASVDLWSAGCILAEMFTRKPIMPGRTEVEQLHKIFQLCGSPSEEYWKKSKLLHATIFKPQQPYKRVVSETFKNFPSSALSLLEVLLAIEPRDRGTASSALQNEFFTSKPLPCDPSTLPKYPPSKEFDAKLREEEARRRRAANKGHVRQESVGRNFKESKVVPAPDANFEIQSSIEKRQGQCNSKCISEKYKPEEEGGYGFPLEPAKLRSRNIFSHSGQSMHPSAYGSSRNMNLKEEAALSGPDRVFTSRKFELRKQNSYWHGSTAQLSRFSNSVAIRGDSRLDMSGDCSLNSQWLEDQFDTRYGHLDDGESNQLLDGTKHSRKKDFHLFGKDHAMGCAPKNGHMLNYSGPLLPPEDNLEEILKEHERQIQQAVRKARLVKENKKADSENGQNESLFHFHQMRSGK*