AlfalfaGEDB | MsaG006125

M. sativa ssp. caerulea / MsaG006125

KEGG: K08819
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004693 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0071704 GO:0097472 GO:0140096 GO:1901564
PFAM: PF00642.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006125	XP_024631916.1	74.483	290	68	3	558	844	476	762	7.54e-114	377
MsaG006125	XP_024631916.1	83.178	749	109	6	1	741	1	740	0.0	1135

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006125	sp\|Q9SY74\|C3H5_ARATH	52.715	442	158	8	4	409	34	460	9.34e-145	450

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006125	tr\|G7IN58\|G7IN58_MEDTR	71.739	368	73	5	558	911	477	827	1.76e-134	432
MsaG006125	tr\|G7IN58\|G7IN58_MEDTR	83.200	750	108	6	1	741	1	741	0.0	1134

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006125	TF	C3H

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006125	MtrunA17_Chr2g0276901	85.934	519	68	3	227	741	1	518	0.0	864
MsaG006125	MtrunA17_Chr2g0276901	74.483	290	68	3	558	844	254	540	1.45e-119	374
MsaG006125	MtrunA17_Chr2g0276891	75.397	252	51	4	1	250	1	243	9.52e-84	270
MsaG006125	MtrunA17_Chr2g0320801	38.728	173	90	4	183	348	9	172	2.24e-30	122
MsaG006125	MtrunA17_Chr7g0265751	34.921	189	104	5	176	348	1	186	2.97e-29	119
MsaG006125	MtrunA17_Chr1g0162821	38.728	173	90	4	183	348	9	172	5.45e-29	117

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006125	AT1G10320.2	52.608	441	151	9	4	409	34	451	9.27e-146	450
MsaG006125	AT1G10320.1	52.715	442	158	8	4	409	34	460	9.50e-146	450
MsaG006125	AT1G27650.1	38.690	168	97	4	183	348	9	172	1.23e-28	117
MsaG006125	AT5G42820.1	36.571	175	91	4	183	348	9	172	6.42e-28	115
MsaG006125	AT5G42820.2	36.571	175	91	4	183	348	9	172	6.42e-28	115
MsaG006125	AT1G27650.2	38.384	99	58	1	251	349	28	123	3.92e-16	79.7

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Find 233 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGCAGCATGTCGTTT+CGG	0.428061	2:-1811555	MsaT006125.1:CDS
AAAAGTATCATGAACACACT+AGG	0.623161	2:-1807660	MsaT006125.1:CDS
AAAAGTGGAGCTGGGGTAGT+AGG	0.443968	2:-1807021	MsaT006125.1:CDS
AAAATTGCAAGCTGTTCCAT+GGG	0.569618	2:+1808700	None:intergenic
AAAGAACTCCTGATGAGGAA+TGG	0.572610	2:-1807777	MsaT006125.1:CDS
AAAGAATCTAGACATCAAAG+CGG	0.719311	2:-1806689	MsaT006125.1:CDS
AAAGCAAAGAACTCCTGATG+AGG	0.624280	2:-1807782	MsaT006125.1:CDS
AAAGGAAAGGATCAAGACAT+CGG	0.653130	2:-1807177	MsaT006125.1:CDS
AAAGGAAGGAACTCGCAAAA+GGG	0.512313	2:-1807277	MsaT006125.1:CDS
AAAGGCACCATAGTAGCCAA+AGG	0.654107	2:-1806955	MsaT006125.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	1806379	1812323	1806379	ID=MsaG006125
Chr2	mRNA	1806379	1812323	1806379	ID=MsaT006125.1;Parent=MsaG006125
Chr2	exon	1806379	1807888	1806379	ID=MsaT006125.1.exon8;Parent=MsaT006125.1
Chr2	CDS	1806379	1807888	1806379	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1808512	1808729	1808512	ID=MsaT006125.1.exon7;Parent=MsaT006125.1
Chr2	CDS	1808512	1808729	1808512	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1808933	1809007	1808933	ID=MsaT006125.1.exon6;Parent=MsaT006125.1
Chr2	CDS	1808933	1809007	1808933	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1809790	1809906	1809790	ID=MsaT006125.1.exon5;Parent=MsaT006125.1
Chr2	CDS	1809790	1809906	1809790	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1810019	1810111	1810019	ID=MsaT006125.1.exon4;Parent=MsaT006125.1
Chr2	CDS	1810019	1810111	1810019	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1811443	1811604	1811443	ID=MsaT006125.1.exon3;Parent=MsaT006125.1
Chr2	CDS	1811443	1811604	1811443	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1811685	1811798	1811685	ID=MsaT006125.1.exon2;Parent=MsaT006125.1
Chr2	CDS	1811685	1811798	1811685	ID=cds.MsaT006125.1;Parent=MsaT006125.1
Chr2	exon	1811877	1812323	1811877	ID=MsaT006125.1.exon1;Parent=MsaT006125.1
Chr2	CDS	1811877	1812323	1811877	ID=cds.MsaT006125.1;Parent=MsaT006125.1

Gene Sequence

>MsaT006125.1

ATGTGGTCGAATCGAAAGGAGAAGAGGAAGGCATTGAAGAAATTGAAGAGAAAGGAGAGAAGGAAAGAGATTGCTGAGAAGGAACGTTTGGAGGAAGAAGCTCGACTCAACGATCCTGAAGAGGAGAGAAAGAGGTTACTATTGGAGCAGCAAGAGGCGGAGAGAATCGAAAGGGATAGAATCGCTTTCGAAGAGAGGGAGAAAGCTTGGATTATCAAACAACAACAACAACGAGACCTAGAACAAGAAGAAGAACAAGAACTATCTCAACGAGACGATATCAAAGAAGAAGATGATAAATCAGAATTAGAAGAAGAAGAAGAAGATGATGATGATGATAGTCCTCCGGAGATTATTTGGCTAGGAAATGAAATTATCATCAAAAAGAAGAAAAAGAAAAAGCTGAACCCCAATCCCCTTCTTCTCCTCCACAACCACCAGCACCAGGAGCAGAATGAGCATCATGATAATAGACCTACATCAAATCCCTTTCCCCCGGAATCTCCCTCTCAACCTCTGCACAATGTTGCTCAACAACTACCTAATTTCGGAACTGAACTGGATAAAGCTCACTGTCCCTTTCATCTTAAAACTGCAGCATGTCGTTTCGGTGACCGATGTAGCAGGGTCCATTTCTACCCGATAAGTCCTGCACCCTTCTCATCAAAAACATGTACAATGGTCCTGGACTTGCTTGGGAACAAGATCAAGGCCTTGAGGTCTTATACAGATGAGGAGGTTGAACGCTGTTTTGAAGAGTTTTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGTGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACCTGCGAGGAAATGTCTACGTGCAGTATAAGTTGTTGGATTCTGCTCTGCTTGCTTATAACTCAGTTAATGGTCGCTACTTTGCTGGGAAACAGGTGAGCTGTAAATTTGTTAATTTAACAAGATGGAAGGTTGCCATTTGTGGCGAGTATATGAAATCAGGTTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATTCACTGTTTCCGTAATCCTGGCGGAGACTATGAATGGGCAGATTCTGATAAACCACCCCCGAAATTTTGGGTAAAGGAGATGGTTGCTTTATTTGGTCATTCTGATAATTGTGAGATGTCAAGGGTCCATGGAAATTTTAGCACGCTGAAGCACTCCAGCAATATCCTAGAAACAGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAGGGAGATGGGTCAATTAAATGGTAGTCGTTCTAGTAGAAGAAAACAGGAGGATGAAAGAAAGCAAAGAACTCCTGATGAGGAATGGAATACCAACTTTAAATACAATCATAAAAGAAAATACAGGAACAAAACTTCTGATTCTGATTCTGACAGGGAAGGGTTAGAAGAGGTAGATAGGAAAAAGTATCATGAACACACTAGGAAAAGCTCATTTAATAGGAACAAGGATGACAATAGCAGAAAGCATGAAGAGTATTCTGATGTAGATAGGGTTACTATAAACAGGGACAATGAAAAGCAGCATGATAGAAAAGGAAGGAACTCACAAAAGTGGATCTGGGATAGTAGTAGGAGCTGGATTCATGAGGCTGGATGTGATGAGGATAGAGATGGAGATGGAAGAAGACACCATAGTAGCCGAAGGAAAGGATCGAGACATCAGAGAAGGGACAGCAGCAATGTAACTGATGAATCTGAATCTGACAAAGATAGAGGCCATGAAGAGTATTCTGATGTGGATTGGGATACTATGAGTAGGGACAATGAAAAGCAGCATGGCAGTAAAGGAAGGAACTCGCAAAAGGGGAACAGCGATAGTAGATACCGGATTTATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAGGCACCATGGTAGCCAAAGGAAAGGATCAAGACATCGGAGCAGGGACAGCAGTAATGTAGCTGACGAGTCTGAATCTGACAAAGATGGAGGACATGAGTATTCTGACGTGGATTGGGATACTATGAGTAGGGACAACGTAAAGCAGCATGACAGCAAAGGAAGGAACTCACAAAAGTGGAGCTGGGGTAGTAGGTACCGGATTCATGAGGCTGAACCAGATGAGGATAGACATACAAAAAGGCACCATAGTAGCCAAAGGAAAGGATTGAAACATCAGAGCAGGGACAACAGTAAGGTAACTGATAAATCTGAATCCGGCAAAGATACAGACCATGAAGAGTATTCTGATGTGGATTGGGATACTACGAGTAGGGACAATGAAAAGCAGCATGACAGCAAAGGAAAGAACTCACATAAGAGGAATGGGGATAGTAGGTACCAGATTGATGAGGCTGGATCAGATGAGGATAGACATAGAAAAAAGCACCTTAGTAGCCAAATGAAAGAATCTAGACATCAAAGCGGGGACAGCTGTTACGGAATCGATGAATCTGACAAAGATAGAGGAGAGATGGGAGCACAACATGATTACTCTAGGAAAAGCTCGAGACACAAAAGATCTGATCTTCGAGACTACTGTGAAGAGTATGAAAACGAAAATGATAAAGTTGATGGGGGTTGGTCTCAGAGAGACAGTGACCGACGAGCACATCATCACAAAAAGAAGAGATTGAAATACCAGAAGAAATTGGATTCCACCAATGGAGAGTTGTCTTGCAAGAACCCAAGCGAAGACAGACAAGAACAAAGCAAAGGAAGTGACAAACACTTATAA

Protein sequence

>MsaT006125.1

MWSNRKEKRKALKKLKRKERRKEIAEKERLEEEARLNDPEEERKRLLLEQQEAERIERDRIAFEEREKAWIIKQQQQRDLEQEEEQELSQRDDIKEEDDKSELEEEEEDDDDDSPPEIIWLGNEIIIKKKKKKKLNPNPLLLLHNHQHQEQNEHHDNRPTSNPFPPESPSQPLHNVAQQLPNFGTELDKAHCPFHLKTAACRFGDRCSRVHFYPISPAPFSSKTCTMVLDLLGNKIKALRSYTDEEVERCFEEFYEDVHTEFLKFGEIVNFKVCKNGSFHLRGNVYVQYKLLDSALLAYNSVNGRYFAGKQVSCKFVNLTRWKVAICGEYMKSGYKTCSHGTACNFIHCFRNPGGDYEWADSDKPPPKFWVKEMVALFGHSDNCEMSRVHGNFSTLKHSSNILETDSDRYHSRRSRSREMGQLNGSRSSRRKQEDERKQRTPDEEWNTNFKYNHKRKYRNKTSDSDSDREGLEEVDRKKYHEHTRKSSFNRNKDDNSRKHEEYSDVDRVTINRDNEKQHDRKGRNSQKWIWDSSRSWIHEAGCDEDRDGDGRRHHSSRRKGSRHQRRDSSNVTDESESDKDRGHEEYSDVDWDTMSRDNEKQHGSKGRNSQKGNSDSRYRIYEAGSDEDRHRKRHHGSQRKGSRHRSRDSSNVADESESDKDGGHEYSDVDWDTMSRDNVKQHDSKGRNSQKWSWGSRYRIHEAEPDEDRHTKRHHSSQRKGLKHQSRDNSKVTDKSESGKDTDHEEYSDVDWDTTSRDNEKQHDSKGKNSHKRNGDSRYQIDEAGSDEDRHRKKHLSSQMKESRHQSGDSCYGIDESDKDRGEMGAQHDYSRKSSRHKRSDLRDYCEEYENENDKVDGGWSQRDSDRRAHHHKKKRLKYQKKLDSTNGELSCKNPSEDRQEQSKGSDKHL*