AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006195


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006195 MtrunA17_Chr2g0278511 99.766 427 1 0 1 427 1 427 0.0 886
MsaG006195 MtrunA17_Chr1g0201891 80.230 435 74 5 1 427 1 431 0.0 692
MsaG006195 MtrunA17_Chr5g0404321 55.300 434 169 12 1 427 1 416 8.23e-156 446
MsaG006195 MtrunA17_Chr2g0286441 58.005 381 137 6 49 427 34 393 1.07e-154 443
MsaG006195 MtrunA17_Chr1g0196071 53.241 432 167 10 1 427 1 402 5.91e-154 441
MsaG006195 MtrunA17_Chr8g0373001 52.791 430 182 8 1 427 1 412 6.86e-149 429
MsaG006195 MtrunA17_Chr1g0155301 49.777 448 178 9 1 427 1 422 1.26e-141 410
MsaG006195 MtrunA17_Chr2g0315641 48.670 376 145 9 54 427 42 371 1.18e-116 345
MsaG006195 MtrunA17_Chr2g0315651 42.632 380 163 11 54 427 37 367 1.03e-92 284
MsaG006195 MtrunA17_Chr8g0373361 42.791 430 189 15 15 420 9 405 7.98e-92 283
MsaG006195 MtrunA17_Chr8g0373331 36.449 428 184 13 1 420 1 348 1.20e-74 237
MsaG006195 MtrunA17_Chr1g0156151 46.083 217 105 5 1 211 1 211 4.59e-53 177
MsaG006195 MtrunA17_Chr8g0373351 33.679 386 128 11 49 419 14 286 2.25e-49 169
MsaG006195 MtrunA17_Chr8g0373341 38.767 227 89 7 1 207 1 197 8.97e-30 117
MsaG006195 MtrunA17_Chr8g0373341 45.455 99 47 2 320 417 228 320 7.59e-17 81.3
MsaG006195 MtrunA17_Chr3g0091401 40.404 99 52 2 96 194 8 99 4.17e-15 71.2
MsaG006195 MtrunA17_Chr2g0334041 40.909 110 44 5 323 426 265 359 3.74e-12 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006195 AT1G25280.1 73.392 451 90 14 1 427 1 445 0.0 612
MsaG006195 AT1G76900.2 70.130 462 96 11 1 427 1 455 0.0 609
MsaG006195 AT1G76900.1 70.130 462 96 11 1 427 1 455 0.0 609
MsaG006195 AT1G76900.3 70.130 462 96 11 1 427 1 455 0.0 609
MsaG006195 AT1G43640.1 68.552 442 111 7 1 427 1 429 0.0 605
MsaG006195 AT1G43640.2 70.400 375 86 5 66 427 1 363 0.0 535
MsaG006195 AT2G47900.2 55.093 432 163 7 1 427 1 406 3.77e-167 475
MsaG006195 AT2G47900.1 55.093 432 163 7 1 427 1 406 3.77e-167 475
MsaG006195 AT2G47900.3 54.965 433 163 8 1 427 1 407 1.13e-165 472
MsaG006195 AT2G18280.2 52.995 434 156 9 1 427 1 393 1.42e-146 422
MsaG006195 AT2G18280.1 52.995 434 156 9 1 427 1 393 1.42e-146 422
MsaG006195 AT1G47270.3 50.230 434 163 8 1 427 1 388 9.23e-140 405
MsaG006195 AT1G47270.1 50.230 434 163 8 1 427 26 413 1.23e-139 405
MsaG006195 AT1G47270.2 50.230 434 163 8 1 427 25 412 1.27e-139 405
MsaG006195 AT3G06380.1 51.979 379 146 8 54 427 33 380 3.54e-128 375
MsaG006195 AT5G18680.1 49.148 411 162 11 32 427 11 389 1.78e-125 369
MsaG006195 AT1G25280.3 73.063 271 52 11 174 427 1 267 8.91e-124 360
MsaG006195 AT1G25280.2 73.063 271 52 11 174 427 1 267 8.91e-124 360
MsaG006195 AT1G53320.1 48.294 381 151 8 51 427 41 379 1.06e-115 343
MsaG006195 AT5G18680.2 51.703 323 116 9 113 427 7 297 7.79e-101 302
MsaG006195 AT3G06380.2 51.111 315 119 7 117 427 5 288 7.08e-100 300
MsaG006195 AT1G61940.2 56.977 86 37 0 57 142 1 86 8.86e-31 119
MsaG006195 AT1G61940.1 60.656 61 24 0 57 117 1 61 3.16e-19 87.0

Find 118 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGCTTTGTTAGTTGAAAA+TGG 0.215408 2:-2670203 MsaT006195.1:intron
ATCTGCAACTAACCTGTTTC+AGG 0.217420 2:+2670926 None:intergenic
TACACCAGATCAAACTTTCT+TGG 0.237446 2:-2669613 MsaT006195.1:intron
ATGACATCAAATAGTAATTC+TGG 0.251135 2:+2671093 None:intergenic
CGTGACGTTCGTGATAGTTT+TGG 0.276663 2:-2671246 MsaT006195.1:CDS
CCCGCATCAAGTGCTGAATT+TGG 0.304909 2:+2669382 None:intergenic
CAGTCCCCGGAGGACATATA+TGG 0.310396 2:+2669545 None:intergenic
GTGCTTCTGTTTGCCAGTCT+TGG 0.312781 2:-2671014 MsaT006195.1:CDS
GATGCGGGCGGCTCCGTTCC+CGG 0.316477 2:-2669367 MsaT006195.1:CDS
CAGAATAATCTTATCATGTT+CGG 0.319403 2:+2669033 None:intergenic
GCTTCCACCCAACCACCTGC+TGG 0.321946 2:-2669085 MsaT006195.1:CDS
GCCGTCATCATCCTCATTAC+AGG 0.338459 2:+2669228 None:intergenic
TTGTAATTCAAAATAGTTGC+TGG 0.356421 2:-2671128 MsaT006195.1:CDS
GTGAATTAGCTCTGGCTGTC+CGG 0.359818 2:+2669348 None:intergenic
TCATTCAATGCTTTATCAAA+AGG 0.375284 2:-2670781 MsaT006195.1:CDS
CATATATGTCCTCCGGGGAC+TGG 0.388613 2:-2669544 MsaT006195.1:CDS
ACATATATGGGCAGAAGTGC+AGG 0.394714 2:+2669558 None:intergenic
GTTAGTTTGCCGCAGAACTC+TGG 0.395072 2:+2670961 None:intergenic
TTCTGCAATTCGGCAAAGTT+GGG 0.396243 2:-2669015 MsaT006195.1:CDS
AATTACTATTTGATGTCATT+CGG 0.397064 2:-2671089 MsaT006195.1:CDS
AAAGCTTGGAATGCAGATAA+AGG 0.399095 2:+2668962 None:intergenic
TTACTCGTCCCCGAAAATTA+AGG 0.402869 2:+2669140 None:intergenic
ATTCCCTGTGTCCCTGAAAC+AGG 0.406088 2:-2670938 MsaT006195.1:intron
TTCTGCCCATATATGTCCTC+CGG 0.408726 2:-2669551 MsaT006195.1:CDS
CTTCCACCCAACCACCTGCT+GGG 0.409907 2:-2669084 MsaT006195.1:CDS
CACTGAGTATGTTATTTCAA+TGG 0.410829 2:-2670138 MsaT006195.1:CDS
GTGAGAATACTTGGCCTTCA+AGG 0.416059 2:-2671053 MsaT006195.1:CDS
TCGGCGCCCCAGCAGGTGGT+TGG 0.419959 2:+2669077 None:intergenic
CTTCTGTTTGCCAGTCTTGG+AGG 0.420970 2:-2671011 MsaT006195.1:CDS
TGTAATTGTTCATGCCATCT+TGG 0.429018 2:+2669172 None:intergenic
CTCAGTGTAGGTTGTTCTCC+TGG 0.432833 2:+2670154 None:intergenic
TAACTCCCAGATGGGACCTT+TGG 0.438868 2:+2669487 None:intergenic
GCAACTACATGCTTCCTTGA+AGG 0.442687 2:+2671039 None:intergenic
TGCTCCGGAACGAGTCCTCC+AGG 0.444143 2:+2669320 None:intergenic
GTATCGCCAAAGGTCCCATC+TGG 0.445185 2:-2669493 MsaT006195.1:CDS
GATGGTGTCGGCGCCCCAGC+AGG 0.447033 2:+2669070 None:intergenic
GATAAGATTATTCTGCAATT+CGG 0.448717 2:-2669025 MsaT006195.1:CDS
CGGCGCCCCAGCAGGTGGTT+GGG 0.449066 2:+2669078 None:intergenic
AGAATAATCTTATCATGTTC+GGG 0.450318 2:+2669034 None:intergenic
ATTCTGCAATTCGGCAAAGT+TGG 0.451251 2:-2669016 MsaT006195.1:CDS
ATATATGTCCTCCGGGGACT+GGG 0.453188 2:-2669543 MsaT006195.1:CDS
TGACATCAAATAGTAATTCT+GGG 0.457179 2:+2671094 None:intergenic
TAATGCAATGCATCTTCCTT+GGG 0.462060 2:+2669416 None:intergenic
CATTCAATGCTTTATCAAAA+GGG 0.462254 2:-2670780 MsaT006195.1:CDS
CAGGGCTCAGACAAAGGAAT+AGG 0.465192 2:+2670735 None:intergenic
AATTGTTCATGCCATCTTGG+AGG 0.466985 2:+2669175 None:intergenic
TGACGGCAAGATGAGACCTT+TGG 0.479423 2:-2669212 MsaT006195.1:CDS
TCTGCCCATATATGTCCTCC+GGG 0.481297 2:-2669550 MsaT006195.1:CDS
TGAATTAGCTCTGGCTGTCC+GGG 0.484556 2:+2669349 None:intergenic
TAGAGGAGAGTGAGAATACT+TGG 0.484573 2:-2671062 MsaT006195.1:CDS
CTATTCCTTTGTCTGAGCCC+TGG 0.486417 2:-2670734 MsaT006195.1:intron
ATAATGCAATGCATCTTCCT+TGG 0.491165 2:+2669415 None:intergenic
AAACTATTCACAAGCCAACT+TGG 0.491824 2:+2668913 None:intergenic
TTATCATGTTCGGGTGGTGC+TGG 0.495403 2:+2669043 None:intergenic
TTAAGCATATTGCAAAAGCT+TGG 0.496726 2:+2668948 None:intergenic
GTTCCCTGGAGGACTCGTTC+CGG 0.496788 2:-2669324 MsaT006195.1:CDS
ATGATTCCGTCTCGTGGCCC+TGG 0.498403 2:+2670800 None:intergenic
TCCTCTCTGCTAAGAGGACC+AGG 0.507703 2:-2670172 MsaT006195.1:CDS
TTAGTTTGCCGCAGAACTCT+GGG 0.509843 2:+2670962 None:intergenic
AAAGTCTCATGGTTCTGTAC+AGG 0.510601 2:-2671169 MsaT006195.1:CDS
TGTAATTCAAAATAGTTGCT+GGG 0.513418 2:-2671127 MsaT006195.1:CDS
AGAGCTAATTCACCGTTCCC+TGG 0.515311 2:-2669338 MsaT006195.1:CDS
ACCAAATTCAGCACTTGATG+CGG 0.517901 2:-2669383 MsaT006195.1:CDS
ACTTCGAAAATGAGATGCTC+CGG 0.519823 2:+2669305 None:intergenic
CGCCCCAGCAGGTGGTTGGG+TGG 0.525317 2:+2669081 None:intergenic
AGGGAACGGTGAATTAGCTC+TGG 0.526856 2:+2669340 None:intergenic
TAGCTCTGGCTGTCCGGGAA+CGG 0.532391 2:+2669354 None:intergenic
GAGACTTTCCTCTATGATGA+TGG 0.534079 2:+2671184 None:intergenic
TGCACATATTCCTCCAAGAC+TGG 0.534318 2:+2671001 None:intergenic
AATTCCTCCTCTCTGCTAAG+AGG 0.537777 2:-2670178 MsaT006195.1:CDS
GTTTACCAGGGCTCAGACAA+AGG 0.542225 2:+2670729 None:intergenic
TTCCACCCAACCACCTGCTG+GGG 0.546085 2:-2669083 MsaT006195.1:CDS
GGTGCTGGTTGAGATGGTGT+CGG 0.550204 2:+2669058 None:intergenic
CCAAATTCAGCACTTGATGC+GGG 0.550546 2:-2669382 MsaT006195.1:CDS
GGTGTCGGCGCCCCAGCAGG+TGG 0.552680 2:+2669073 None:intergenic
CAATCGAGTTCAGCAGTGCA+CGG 0.554602 2:-2669270 MsaT006195.1:CDS
AAGCAGCTTTGACACCAAGT+TGG 0.560190 2:-2668927 MsaT006195.1:CDS
CGGCTCGTCTTCCCAGTCCC+CGG 0.560397 2:+2669532 None:intergenic
TCGGGTGGTGCTGGTTGAGA+TGG 0.560858 2:+2669052 None:intergenic
AGTCCCCGGAGGACATATAT+GGG 0.561123 2:+2669546 None:intergenic
AGATCAAGTAATACTTACAT+TGG 0.570296 2:-2670098 MsaT006195.1:CDS
ACATATGAACTAAATGTGCT+CGG 0.570299 2:-2669448 MsaT006195.1:CDS
CTAAATGTGCTCGGAACTCG+AGG 0.572448 2:-2669439 MsaT006195.1:CDS
CTAACCTGTTTCAGGGACAC+AGG 0.573911 2:+2670934 None:intergenic
TCTGCAACTAACCTGTTTCA+GGG 0.575798 2:+2670927 None:intergenic
TGGGAGTTACAACATAGCTC+AGG 0.584581 2:-2669473 MsaT006195.1:CDS
CTTACTGGCCATCATCATAG+AGG 0.586395 2:-2671192 MsaT006195.1:CDS
GACATCAAATAGTAATTCTG+GGG 0.586583 2:+2671095 None:intergenic
GGCATGAACAATTACAGTGC+TGG 0.588906 2:-2669165 MsaT006195.1:CDS
TGATGTCATTCGGCGACTAG+AGG 0.590244 2:-2671079 MsaT006195.1:CDS
GGAACGAGTCCTCCAGGGAA+CGG 0.592037 2:+2669326 None:intergenic
CATCATAGAGGAAAGTCTCA+TGG 0.596493 2:-2671180 MsaT006195.1:CDS
TGAAATAACATACTCAGTGT+AGG 0.597863 2:+2670142 None:intergenic
TAAAGGATATCGATAATCCA+TGG 0.599763 2:+2668979 None:intergenic
GCTATGTTGTAACTCCCAGA+TGG 0.603839 2:+2669478 None:intergenic
CATTGAATGATTCCGTCTCG+TGG 0.607917 2:+2670794 None:intergenic
CTATGTTGTAACTCCCAGAT+GGG 0.609999 2:+2669479 None:intergenic
TGCTCGGAACTCGAGGCCCA+AGG 0.612968 2:-2669432 MsaT006195.1:CDS
TATCGCCAAAGGTCCCATCT+GGG 0.614613 2:-2669492 MsaT006195.1:CDS
TTTCAGCCAGGGCCACGAGA+CGG 0.619741 2:-2670806 MsaT006195.1:intron
GAACGTCACGAACTATGCTA+CGG 0.624312 2:+2671259 None:intergenic
TAACCTGTTTCAGGGACACA+GGG 0.626828 2:+2670935 None:intergenic
TCCTGGTCCTCTTAGCAGAG+AGG 0.627316 2:+2670171 None:intergenic
CATATATGGGCAGAAGTGCA+GGG 0.629040 2:+2669559 None:intergenic
TCCTGTAATGAGGATGATGA+CGG 0.629322 2:-2669229 MsaT006195.1:CDS
GTCTTGGAGGAATATGTGCA+AGG 0.636885 2:-2670998 MsaT006195.1:CDS
TGGGAAAGATATGTTCACCA+TGG 0.642687 2:-2668996 MsaT006195.1:CDS
GTTAAGAGCCCAGAGTTCTG+CGG 0.649777 2:-2670970 MsaT006195.1:CDS
TGGTCCTCTTAGCAGAGAGG+AGG 0.654986 2:+2670174 None:intergenic
GCTCCGGAACGAGTCCTCCA+GGG 0.659722 2:+2669321 None:intergenic
ATACTTACATTGGAAAACTG+AGG 0.671640 2:-2670088 MsaT006195.1:intron
ACATCAAATAGTAATTCTGG+GGG 0.673779 2:+2671096 None:intergenic
AATTCAGCACTTGATGCGGG+CGG 0.674604 2:-2669379 MsaT006195.1:CDS
ATAATCTTATCATGTTCGGG+TGG 0.690693 2:+2669037 None:intergenic
CTCGTCTTCCCAGTCCCCGG+AGG 0.692752 2:+2669535 None:intergenic
GCTAATTCACCGTTCCCTGG+AGG 0.694493 2:-2669335 MsaT006195.1:CDS
CTGCCCATATATGTCCTCCG+GGG 0.741928 2:-2669549 MsaT006195.1:CDS
ATATGGGCAGAAGTGCAGGG+AGG 0.788147 2:+2669562 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 2668916 2671289 2668916 ID=MsaG006195
Chr2 mRNA 2668916 2671289 2668916 ID=MsaT006195.1;Parent=MsaG006195
Chr2 exon 2668916 2669627 2668916 ID=MsaT006195.1.exon4;Parent=MsaT006195.1
Chr2 CDS 2668916 2669627 2668916 ID=cds.MsaT006195.1;Parent=MsaT006195.1
Chr2 exon 2670089 2670221 2670089 ID=MsaT006195.1.exon3;Parent=MsaT006195.1
Chr2 CDS 2670089 2670221 2670089 ID=cds.MsaT006195.1;Parent=MsaT006195.1
Chr2 exon 2670735 2670822 2670735 ID=MsaT006195.1.exon2;Parent=MsaT006195.1
Chr2 CDS 2670735 2670822 2670735 ID=cds.MsaT006195.1;Parent=MsaT006195.1
Chr2 exon 2670939 2671289 2670939 ID=MsaT006195.1.exon1;Parent=MsaT006195.1
Chr2 CDS 2670939 2671289 2670939 ID=cds.MsaT006195.1;Parent=MsaT006195.1
Gene Sequence

>MsaT006195.1

ATGTCTTTCCGTAGCATAGTTCGTGACGTTCGTGATAGTTTTGGGAGCTTATCTAGGCGTAGTTTTGATGTCAAACTTACTGGCCATCATCATAGAGGAAAGTCTCATGGTTCTGTACAGGATTTGCATGATCAGCCTCTTGTAATTCAAAATAGTTGCTGGGCGAACTTACCCCCAGAATTACTATTTGATGTCATTCGGCGACTAGAGGAGAGTGAGAATACTTGGCCTTCAAGGAAGCATGTAGTTGCATGTGCTTCTGTTTGCCAGTCTTGGAGGAATATGTGCAAGGACATTGTTAAGAGCCCAGAGTTCTGCGGCAAACTAACATTCCCTGTGTCCCTGAAACAGCCAGGGCCACGAGACGGAATCATTCAATGCTTTATCAAAAGGGATAAATCTAACTTAACATATCACCTATTCCTTTGTCTGAGCCCTGCTTTGTTAGTTGAAAATGGAAAATTCCTCCTCTCTGCTAAGAGGACCAGGAGAACAACCTACACTGAGTATGTTATTTCAATGGATGCTGACAACATCTCTAGATCAAGTAATACTTACATTGGAAAACTGAGATCAAACTTTCTTGGAACAAAGTTCATCATATATGATACACAGCCTCCCTGCACTTCTGCCCATATATGTCCTCCGGGGACTGGGAAGACGAGCCGTAGATTTTCTAAAAAGGTATCGCCAAAGGTCCCATCTGGGAGTTACAACATAGCTCAGGTAACATATGAACTAAATGTGCTCGGAACTCGAGGCCCAAGGAAGATGCATTGCATTATGCATTCAATACCAAATTCAGCACTTGATGCGGGCGGCTCCGTTCCCGGACAGCCAGAGCTAATTCACCGTTCCCTGGAGGACTCGTTCCGGAGCATCTCATTTTCGAAGTCTCTAGATCATTCAATCGAGTTCAGCAGTGCACGGTTTTCTGAGATCGGGGGATCCTGTAATGAGGATGATGACGGCAAGATGAGACCTTTGGTTCTGAAAAACAAGCCTCCAAGATGGCATGAACAATTACAGTGCTGGTGCCTTAATTTTCGGGGACGAGTAACTGTTGCATCTGTTAAAAACTTTCAGCTGATTGCTTCCACCCAACCACCTGCTGGGGCGCCGACACCATCTCAACCAGCACCACCCGAACATGATAAGATTATTCTGCAATTCGGCAAAGTTGGGAAAGATATGTTCACCATGGATTATCGATATCCTTTATCTGCATTCCAAGCTTTTGCAATATGCTTAAGCAGCTTTGACACCAAGTTGGCTTGTGAATAG

Protein sequence

>MsaT006195.1

MSFRSIVRDVRDSFGSLSRRSFDVKLTGHHHRGKSHGSVQDLHDQPLVIQNSCWANLPPELLFDVIRRLEESENTWPSRKHVVACASVCQSWRNMCKDIVKSPEFCGKLTFPVSLKQPGPRDGIIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTYTEYVISMDADNISRSSNTYIGKLRSNFLGTKFIIYDTQPPCTSAHICPPGTGKTSRRFSKKVSPKVPSGSYNIAQVTYELNVLGTRGPRKMHCIMHSIPNSALDAGGSVPGQPELIHRSLEDSFRSISFSKSLDHSIEFSSARFSEIGGSCNEDDDGKMRPLVLKNKPPRWHEQLQCWCLNFRGRVTVASVKNFQLIASTQPPAGAPTPSQPAPPEHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLSSFDTKLACE*