AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006249


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006249 MtrunA17_Chr2g0279141 94.947 1029 34 5 31 1043 14 1040 0.0 1999
MsaG006249 MtrunA17_Chr4g0050401 60.898 1069 309 17 31 1043 14 1029 0.0 1223
MsaG006249 MtrunA17_Chr8g0382191 44.252 1096 504 28 31 1041 10 1083 0.0 808
MsaG006249 MtrunA17_Chr8g0377501 38.997 618 285 20 455 1029 396 964 2.03e-114 377
MsaG006249 MtrunA17_Chr8g0377501 49.721 179 78 4 31 204 15 186 2.04e-45 177
MsaG006249 MtrunA17_Chr3g0122351 37.194 613 316 15 455 1035 375 950 5.97e-101 340
MsaG006249 MtrunA17_Chr3g0122351 47.778 180 86 3 26 204 3 175 3.66e-43 170
MsaG006249 MtrunA17_Chr4g0068161 32.190 612 361 15 411 995 313 897 2.95e-75 267
MsaG006249 MtrunA17_Chr4g0068161 34.713 314 147 9 31 335 26 290 6.16e-32 134
MsaG006249 MtrunA17_Chr2g0294711 31.511 622 353 18 411 995 301 886 1.70e-71 256
MsaG006249 MtrunA17_Chr2g0294711 54.412 136 61 1 31 165 26 161 4.00e-38 154
MsaG006249 MtrunA17_Chr8g0382181 58.036 112 47 0 453 564 362 473 1.11e-40 157
MsaG006249 MtrunA17_Chr8g0382181 57.955 88 36 1 72 158 8 95 3.02e-27 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006249 AT5G64220.1 52.170 1014 429 20 31 1006 14 1009 0.0 981
MsaG006249 AT5G64220.2 52.170 1014 429 20 31 1006 14 1009 0.0 981
MsaG006249 AT5G09410.1 51.619 1050 398 24 23 1037 9 983 0.0 976
MsaG006249 AT5G09410.2 51.552 1063 397 26 23 1037 9 1001 0.0 972
MsaG006249 AT5G09410.3 49.907 1076 395 25 23 1037 68 1060 0.0 952
MsaG006249 AT5G09410.4 48.316 950 373 26 136 1037 1 880 0.0 776
MsaG006249 AT2G22300.2 43.167 1061 468 26 25 1018 8 1000 0.0 750
MsaG006249 AT2G22300.1 43.167 1061 468 26 25 1018 8 1000 0.0 750
MsaG006249 AT2G22300.3 42.475 1010 446 26 76 1018 1 942 0.0 687
MsaG006249 AT1G67310.1 37.968 561 297 12 463 996 441 977 4.63e-98 333
MsaG006249 AT1G67310.1 37.548 261 138 6 16 252 15 274 8.27e-39 157
MsaG006249 AT3G16940.3 30.877 570 339 14 465 1008 274 814 1.05e-62 229
MsaG006249 AT3G16940.3 53.731 134 61 1 38 170 4 137 4.33e-36 148
MsaG006249 AT3G16940.1 30.877 570 339 14 465 1008 301 841 1.87e-62 229
MsaG006249 AT3G16940.1 52.482 141 66 1 31 170 24 164 3.86e-37 151
MsaG006249 AT3G16940.2 52.482 141 66 1 31 170 24 164 1.94e-37 151
MsaG006249 AT3G16940.2 29.130 460 278 13 465 898 301 738 4.84e-37 150

Find 259 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCCAAAATGTTATCTTCT+TGG 0.180507 2:-3328624 None:intergenic
ACCTGTGAGACGCACATTAT+TGG 0.203091 2:+3329647 MsaT006249.1:CDS
CAGGATGAGGATGATGAATT+TGG 0.206392 2:+3332203 MsaT006249.1:CDS
TCTTTAAGGCAGAGGGTTTC+AGG 0.219816 2:-3332089 None:intergenic
TTGGAATTTGCATCTGATTA+TGG 0.224990 2:+3329426 MsaT006249.1:CDS
GTATCCAAGGGTGCTGATTC+TGG 0.228095 2:+3331831 MsaT006249.1:CDS
TGACCAAGAAGATAACATTT+TGG 0.230414 2:+3328621 MsaT006249.1:CDS
TCTTTCTCTTCTAGCTTCTA+AGG 0.232278 2:+3332244 MsaT006249.1:CDS
TTAACTCCAGCAGCTAAAAT+TGG 0.236860 2:-3330997 None:intergenic
GCTTGCACAACAAAACTATT+TGG 0.243585 2:+3329536 MsaT006249.1:CDS
GTGAAATTCTTCGTAATTAT+CGG 0.251549 2:+3325072 MsaT006249.1:CDS
GGTAGTCAGCAAGAAGTTTC+AGG 0.273985 2:+3332005 MsaT006249.1:CDS
TATCTGGCAGGATTGTAATA+TGG 0.281495 2:+3333873 MsaT006249.1:intron
TTACGTGAGGATGCTGATTC+AGG 0.282437 2:+3328190 MsaT006249.1:CDS
CTTTACCCAATCATTGAGTT+TGG 0.288531 2:+3329407 MsaT006249.1:CDS
CAGAGTAACAAGTCAAATAT+TGG 0.290234 2:+3328031 MsaT006249.1:intron
CTAAATGTATCCCTGTTAAA+AGG 0.293817 2:-3328469 None:intergenic
TTAGAAAGGACGGGCATAAT+TGG 0.298000 2:+3326101 MsaT006249.1:CDS
AAGCAGTCAGAGAATCTTTA+AGG 0.307483 2:-3332103 None:intergenic
CATGGACAGTCATCAGTTTC+TGG 0.308915 2:+3328430 MsaT006249.1:CDS
GGATGATTACGATTATTTAA+AGG 0.310131 2:+3333618 MsaT006249.1:CDS
GTTCTGCCTGAAGGAGATTC+TGG 0.319177 2:-3331873 None:intergenic
AGATCGAAAAGGCCCTTTCT+AGG 0.321423 2:+3333665 MsaT006249.1:CDS
GATTATGGAACTGGTTTACT+AGG 0.326951 2:+3329441 MsaT006249.1:CDS
GATAATCAATCAAATGCTAT+AGG 0.329621 2:-3333979 None:intergenic
TGTTGTGCAAGCTTCTCTTT+TGG 0.331127 2:-3329525 None:intergenic
CCCTCAAAGGTTTGATTTGA+AGG 0.340226 2:-3330706 None:intergenic
TCTGTGCAGGTGTTGATTAT+TGG 0.340351 2:+3330379 MsaT006249.1:intron
AAAATACCTGCCAATTTGAT+TGG 0.342720 2:-3328702 None:intergenic
CTCAGCCTCTCCAATCAAAT+TGG 0.345074 2:+3328692 MsaT006249.1:CDS
CATAGTATTTGTCCATTACT+TGG 0.351108 2:+3326902 MsaT006249.1:CDS
ATCTGGCAGGATTGTAATAT+GGG 0.355450 2:+3333874 MsaT006249.1:intron
GGTGGCCTTGTATGAGGTTC+TGG 0.361559 2:-3325110 None:intergenic
TGTAACTGGTCCTGTATGTT+TGG 0.365871 2:+3330436 MsaT006249.1:CDS
GGGGCTTTATTAAGGGCTTC+TGG 0.366885 2:-3333568 None:intergenic
TGTCCATTACTTGGAAGTTA+AGG 0.370935 2:+3326911 MsaT006249.1:CDS
CAAATTCCAAACTCAATGAT+TGG 0.374023 2:-3329413 None:intergenic
TTTGCATCTGATTATGGAAC+TGG 0.378088 2:+3329432 MsaT006249.1:CDS
TTACCTGGTGACCTCTTACA+TGG 0.380343 2:-3333450 None:intergenic
CATCTGGTCTGTGGGAATCC+TGG 0.384728 2:+3333492 MsaT006249.1:CDS
TTTAACAGGGATACATTTAG+AGG 0.386399 2:+3328472 MsaT006249.1:CDS
AAACATACAGGACCAGTTAC+AGG 0.389638 2:-3330434 None:intergenic
GACTCAGCATAAGCCCATTT+AGG 0.391534 2:-3329867 None:intergenic
CCTGCTGAGGTTGTAGCTAA+TGG 0.392673 2:+3330472 MsaT006249.1:CDS
TAAAGTATCTCAAAACCTTC+CGG 0.392881 2:-3326081 None:intergenic
CTAGGGAACGAAGCTGATAA+TGG 0.396208 2:+3329459 MsaT006249.1:CDS
GTAACTGGTCCTGTATGTTT+GGG 0.396308 2:+3330437 MsaT006249.1:CDS
AGCAGAAGTGGCCTTACTAT+TGG 0.400345 2:+3328658 MsaT006249.1:CDS
CAGCTGTTCTTGATTATGAC+TGG 0.407104 2:+3330965 MsaT006249.1:CDS
AGGGATACATTTAGAGGAAA+TGG 0.409782 2:+3328478 MsaT006249.1:CDS
AAGCTCCTCCTCACAAGGTT+GGG 0.412362 2:+3330509 MsaT006249.1:CDS
CAATTCTTTGACGAATGATC+AGG 0.413739 2:-3332361 None:intergenic
GGAAGAAGAATATTCAAGTA+AGG 0.417973 2:+3330777 MsaT006249.1:CDS
TCTATGTAACATGTGCCAAT+AGG 0.420339 2:+3330542 MsaT006249.1:CDS
CCCTTCAAATCAAACCTTTG+AGG 0.420394 2:+3330705 MsaT006249.1:CDS
GCTTCTAAGGCACGCAAGTC+AGG 0.423144 2:+3332257 MsaT006249.1:CDS
CCTGAGCCCATCTCTGTCTC+AGG 0.426510 2:+3329815 MsaT006249.1:CDS
CCATCTCCAGAATCTCCTTC+AGG 0.430350 2:+3331867 MsaT006249.1:CDS
AAGGTCAACTCTCCGTCGTC+TGG 0.432444 2:+3328094 MsaT006249.1:CDS
CCGGTCGCAACCACCGATGT+TGG 0.433542 2:-3325040 None:intergenic
CGGTCGCAACCACCGATGTT+GGG 0.433643 2:-3325039 None:intergenic
ATGACATGCTACTTCATTTG+CGG 0.437214 2:+3330650 MsaT006249.1:CDS
TCAAAGAATTGTTAAAATCC+AGG 0.437764 2:+3332373 MsaT006249.1:CDS
CAGATGTTACAACCTGTAAC+TGG 0.439102 2:+3330422 MsaT006249.1:CDS
ATAATCAATCAAATGCTATA+GGG 0.441651 2:-3333978 None:intergenic
GATACACCTGCTGCTGCTCC+TGG 0.442274 2:+3316807 MsaT006249.1:CDS
CAGTTACAGGTTGTAACATC+TGG 0.442436 2:-3330421 None:intergenic
TTGGCACATGTTACATAGAA+AGG 0.446004 2:-3330538 None:intergenic
AATCCTCACCTGGTATTTCA+TGG 0.446131 2:+3329754 MsaT006249.1:CDS
CAGCAGCTTGTGTCGCGTTA+CGG 0.448050 2:-3332127 None:intergenic
TAACTCCAGCAGCTAAAATT+GGG 0.448147 2:-3330996 None:intergenic
CCGTCCTTATCTAACACATT+TGG 0.452434 2:-3330922 None:intergenic
CGGTATTGAGCCCGTGCCTC+TGG 0.453091 2:-3333709 None:intergenic
TTCACTGCAAGCTAACCTAT+TGG 0.453999 2:-3330557 None:intergenic
AAAGATGTATAGCTGCTAGT+TGG 0.455617 2:-3328169 None:intergenic
AATGGTGCTACTTGCATTGA+TGG 0.458677 2:+3328496 MsaT006249.1:CDS
TCCTCCTCACAAGGTTGGGC+GGG 0.458863 2:+3330513 MsaT006249.1:CDS
TGCTGATTCTGGAGCATTGA+CGG 0.459675 2:+3331842 MsaT006249.1:CDS
TGCTCCAGAATCAGCACCCT+TGG 0.461037 2:-3331835 None:intergenic
CAGAGGCACGGGCTCAATAC+CGG 0.461621 2:+3333710 MsaT006249.1:CDS
CCTTCAAATCAAACCTTTGA+GGG 0.462323 2:+3330706 MsaT006249.1:CDS
CCTGAGACAGAGATGGGCTC+AGG 0.464721 2:-3329815 None:intergenic
AATGGGCACAAAGGGCTCTC+TGG 0.465228 2:+3331918 MsaT006249.1:CDS
ACAAAATGATTCTCTGAAAG+AGG 0.465543 2:+3333597 MsaT006249.1:CDS
TGAAGAAGCATCTGTTTCAT+AGG 0.467192 2:+3330839 MsaT006249.1:CDS
TCCAATAATGTGCGTCTCAC+AGG 0.470138 2:-3329648 None:intergenic
TATTTGGAAGAGAAGGTAGA+TGG 0.471256 2:+3329552 MsaT006249.1:CDS
CATCCACTGTGAGGGATTCA+AGG 0.472437 2:-3331971 None:intergenic
AACTCCCTGCTCCAATAGTA+AGG 0.472930 2:-3328669 None:intergenic
CGCTGGAGACGCAAGGGCAG+TGG 0.473291 2:+3333529 MsaT006249.1:CDS
CAAGCTCCTCCTCACAAGGT+TGG 0.474268 2:+3330508 MsaT006249.1:CDS
CTCCTCCTCACAAGGTTGGG+CGG 0.475202 2:+3330512 MsaT006249.1:CDS
CAAACTCAATGATTGGGTAA+AGG 0.475831 2:-3329406 None:intergenic
TAATGTGCGTCTCACAGGTA+AGG 0.477384 2:-3329643 None:intergenic
CTGTATGTTTGGGGAAGTTG+AGG 0.477972 2:+3330447 MsaT006249.1:CDS
CAGATCTCGCCTCTAGCAAT+GGG 0.478573 2:+3331901 MsaT006249.1:CDS
AATCAGCACCCTTGGATACA+AGG 0.479075 2:-3331827 None:intergenic
AGCAGTATAAAACTGTCATC+TGG 0.481921 2:+3333476 MsaT006249.1:CDS
AGTTGGCTTCCTTGTATCCA+AGG 0.484192 2:+3331818 MsaT006249.1:CDS
CGGTGGATTACTAAAGCCCT+TGG 0.485564 2:+3329708 MsaT006249.1:CDS
CCTCTAGCAATGGGCACAAA+GGG 0.489771 2:+3331910 MsaT006249.1:CDS
GTTTGATTTGAAGGGTGCAC+TGG 0.490238 2:-3330697 None:intergenic
CCTTTCTAGGGTGAAGTCCA+TGG 0.491834 2:+3333678 MsaT006249.1:CDS
AAATTCCAAACTCAATGATT+GGG 0.492039 2:-3329412 None:intergenic
CAGAGAATCTTTAAGGCAGA+GGG 0.492056 2:-3332096 None:intergenic
TGTGTTAGATAAGGACGGGC+AGG 0.492165 2:+3330927 MsaT006249.1:CDS
AAGATGTATAGCTGCTAGTT+GGG 0.493026 2:-3328168 None:intergenic
TGGATAGGGATGAGAGCTTG+AGG 0.493574 2:+3329667 MsaT006249.1:CDS
AGTGGCCTTACTATTGGAGC+AGG 0.493890 2:+3328664 MsaT006249.1:CDS
GCATTGATGGCCAGGCAACA+TGG 0.494294 2:+3328509 MsaT006249.1:CDS
GGTAAAATCAACGGCACAGA+TGG 0.494312 2:-3316332 None:intergenic
ATGTAAGAGGTCACCAGGTA+AGG 0.494388 2:+3333452 MsaT006249.1:CDS
CTCAATGATTGGGTAAAGGT+TGG 0.494683 2:-3329402 None:intergenic
AGACTGTGTCCCATGTTGCC+TGG 0.495192 2:-3328519 None:intergenic
AAGGTAACTGAGAGTGGTAA+AGG 0.495980 2:+3330898 MsaT006249.1:CDS
CCATGGACTTCACCCTAGAA+AGG 0.498406 2:-3333678 None:intergenic
ATTTGGTTTGTTAGATCAGC+GGG 0.499725 2:+3332220 MsaT006249.1:CDS
TACCTGGTGACCTCTTACAT+GGG 0.500074 2:-3333449 None:intergenic
TCAGAGAATCTTTAAGGCAG+AGG 0.503635 2:-3332097 None:intergenic
GCCTCTCCAATCAAATTGGC+AGG 0.503644 2:+3328696 MsaT006249.1:CDS
GCAGATCTCGCCTCTAGCAA+TGG 0.504053 2:+3331900 MsaT006249.1:CDS
CTCAACTTCCCCAAACATAC+AGG 0.505769 2:-3330446 None:intergenic
TGCTACTTGCATTGATGGCC+AGG 0.506993 2:+3328501 MsaT006249.1:CDS
CCTGAAGGAGATTCTGGAGA+TGG 0.507277 2:-3331867 None:intergenic
CATGCTACTTCATTTGCGGC+TGG 0.508379 2:+3330654 MsaT006249.1:CDS
TGAAGACTTCCGTCAGAAGA+AGG 0.508589 2:+3333750 MsaT006249.1:CDS
AAAAGAGGAAAAGATCGAAA+AGG 0.508765 2:+3333654 MsaT006249.1:CDS
ATACCTTAACTTCCAAGTAA+TGG 0.508835 2:-3326914 None:intergenic
TTAAAGAGAAACTGTACTCA+TGG 0.508882 2:+3330866 MsaT006249.1:CDS
TAGGGATGAGAGCTTGAGGA+AGG 0.513141 2:+3329671 MsaT006249.1:CDS
AAATGTTATCTTCTTGGTCA+AGG 0.513865 2:-3328618 None:intergenic
CCAACATCGGTGGTTGCGAC+CGG 0.513991 2:+3325040 MsaT006249.1:CDS
CGTGAATTTGATTTCAGAGA+CGG 0.514380 2:+3330583 MsaT006249.1:CDS
CCTCAAAGGTTTGATTTGAA+GGG 0.514709 2:-3330705 None:intergenic
ATTACGATTATTTAAAGGAA+GGG 0.515479 2:+3333623 MsaT006249.1:CDS
GATCGAAAAGGCCCTTTCTA+GGG 0.520085 2:+3333666 MsaT006249.1:CDS
GTACTCGGTGGCCTTGTATG+AGG 0.526249 2:-3325116 None:intergenic
TAATTAATAGTTTCTTCACT+AGG 0.526565 2:-3329618 None:intergenic
TGTGAGGGATTCAAGGTGGC+TGG 0.528273 2:-3331964 None:intergenic
TGAGACGCACATTATTGGAT+AGG 0.528829 2:+3329652 MsaT006249.1:CDS
CCATTAGCTACAACCTCAGC+AGG 0.529864 2:-3330472 None:intergenic
AGGTAACTGAGAGTGGTAAA+GGG 0.533583 2:+3330899 MsaT006249.1:CDS
GGAAGAGCAGACTGTAGAGA+TGG 0.533838 2:+3330798 MsaT006249.1:CDS
TACTAAAGCCCTTGGAGAGG+TGG 0.534922 2:+3329716 MsaT006249.1:CDS
AACATACCAGGAGCAGCAGC+AGG 0.534946 2:-3316813 None:intergenic
TGGCACATGTTACATAGAAA+GGG 0.535451 2:-3330537 None:intergenic
TTGAGATACTTTAGAAAGGA+CGG 0.535823 2:+3326091 MsaT006249.1:CDS
TTGTCAAGCTCCTCCTCACA+AGG 0.536404 2:+3330504 MsaT006249.1:CDS
AAAACTGTCATCTGGTCTGT+GGG 0.538080 2:+3333484 MsaT006249.1:CDS
TGAGATACTTTAGAAAGGAC+GGG 0.540376 2:+3326092 MsaT006249.1:CDS
TGTCCCGTGTTGTCGTCAAA+AGG 0.540895 2:-3329375 None:intergenic
CATGGAGTGCAGATGATTGT+GGG 0.542245 2:+3329772 MsaT006249.1:CDS
AGTAATGGACAAATACTATG+TGG 0.543475 2:-3326899 None:intergenic
AGGGCCAAATGTGTTAGATA+AGG 0.545492 2:+3330918 MsaT006249.1:CDS
TTGAATATGCAATCCTCACC+TGG 0.546965 2:+3329744 MsaT006249.1:CDS
CCCTTTGTGCCCATTGCTAG+AGG 0.547351 2:-3331910 None:intergenic
AGCGTAATATAATCTTCTCC+AGG 0.547811 2:-3333510 None:intergenic
GCCTCTAGCAATGGGCACAA+AGG 0.550083 2:+3331909 MsaT006249.1:CDS
ACAGTCATCAGTTTCTGGAA+TGG 0.550394 2:+3328435 MsaT006249.1:CDS
AGCTGATCCTGAGACAGAGA+TGG 0.551349 2:-3329822 None:intergenic
CGCAAGGGCAGTGGTCTGCG+TGG 0.553707 2:+3333538 MsaT006249.1:CDS
GATTACGATTATTTAAAGGA+AGG 0.553990 2:+3333622 MsaT006249.1:CDS
TAAGCTTATTTCACTGAGAG+AGG 0.554008 2:+3330756 MsaT006249.1:CDS
TAAAACTGTCATCTGGTCTG+TGG 0.556291 2:+3333483 MsaT006249.1:CDS
TTTCTCTGTATCGCCCTCAA+AGG 0.557059 2:-3330719 None:intergenic
GGTCATATCAGATTCTCAAA+AGG 0.557484 2:+3328075 MsaT006249.1:CDS
GGCCCATGTAAGAGGTCACC+AGG 0.559386 2:+3333447 MsaT006249.1:intron
ATAGCTGCTAGTTGGGCTCA+TGG 0.559820 2:-3328161 None:intergenic
GGCGTATCATTATAGACCAC+AGG 0.559963 2:-3332068 None:intergenic
ACAAAACTATTTGGAAGAGA+AGG 0.562047 2:+3329545 MsaT006249.1:CDS
GAAAATTTACCTTCTTCTGA+CGG 0.562189 2:-3333759 None:intergenic
TCTGCAGCTGTTCTGCCTGA+AGG 0.562892 2:-3331882 None:intergenic
GAAGCAGTTAACTCAGGATG+AGG 0.563159 2:+3332190 MsaT006249.1:CDS
CTGAGACAGAGATGGGCTCA+GGG 0.564744 2:-3329814 None:intergenic
GGCACACTACTATAAGTTGT+GGG 0.566733 2:-3328121 None:intergenic
CGCAAGTCAGGACATGGAGA+TGG 0.567106 2:+3332269 MsaT006249.1:CDS
TTGAGGGCGATACAGAGAAA+AGG 0.567585 2:+3330722 MsaT006249.1:CDS
GTGTAGATCATCCACTGTGA+GGG 0.568240 2:-3331979 None:intergenic
GAGTGAAAACTTTGATGCCA+TGG 0.568505 2:-3316293 None:intergenic
GGAAGTTGAGGTTCCTGCTG+AGG 0.568560 2:+3330459 MsaT006249.1:CDS
AGCTGTTCTTGATTATGACT+GGG 0.568754 2:+3330966 MsaT006249.1:CDS
AATGTATCCCTGTTAAAAGG+TGG 0.569203 2:-3328466 None:intergenic
AGGCACACTACTATAAGTTG+TGG 0.569715 2:-3328122 None:intergenic
GTTGGCTTCCTTGTATCCAA+GGG 0.569980 2:+3331819 MsaT006249.1:CDS
TCAAATCGTCCACCTCTCCA+AGG 0.570020 2:-3329725 None:intergenic
CAAATGTGTTAGATAAGGAC+GGG 0.570136 2:+3330923 MsaT006249.1:CDS
CTTCACAAGGTAACTGAGAG+TGG 0.571045 2:+3330892 MsaT006249.1:CDS
GCAAGGGCAGTGGTCTGCGT+GGG 0.572451 2:+3333539 MsaT006249.1:CDS
TACAATTTGAAGCCCAACAT+CGG 0.573008 2:+3325027 MsaT006249.1:CDS
CATTGATGGCCAGGCAACAT+GGG 0.573012 2:+3328510 MsaT006249.1:CDS
ATGTATCCCTGTTAAAAGGT+GGG 0.573798 2:-3328465 None:intergenic
CATGGACTTCACCCTAGAAA+GGG 0.574858 2:-3333677 None:intergenic
TCATGGAGTGCAGATGATTG+TGG 0.576463 2:+3329771 MsaT006249.1:CDS
GGTTCAGTATCCAGAGGCAC+GGG 0.577927 2:+3333699 MsaT006249.1:CDS
ATTATGGAACTGGTTTACTA+GGG 0.578025 2:+3329442 MsaT006249.1:CDS
TAAATGGGCTTATGCTGAGT+CGG 0.579479 2:+3329869 MsaT006249.1:CDS
TTGTTCAGAGAGCGGACAGT+TGG 0.579892 2:+3331801 MsaT006249.1:intron
CCATGAAAACTAAACAAGAC+AGG 0.581522 2:-3329498 None:intergenic
GGGACCCGCCCAACCTTGTG+AGG 0.581655 2:-3330517 None:intergenic
ACCTGCCAATTTGATTGGAG+AGG 0.583640 2:-3328697 None:intergenic
AGTTAACTGCTTCCTCTGAA+AGG 0.583733 2:-3332180 None:intergenic
CAAATCGTCCACCTCTCCAA+GGG 0.584480 2:-3329724 None:intergenic
GCTACTTCATTTGCGGCTGG+AGG 0.584521 2:+3330657 MsaT006249.1:CDS
AGAATTTCACAAATTTCTGC+CGG 0.585579 2:-3325059 None:intergenic
AATGTGCGTCTCACAGGTAA+GGG 0.585778 2:-3329642 None:intergenic
TAGACTTAAGGTCATCTCGC+AGG 0.587543 2:-3329578 None:intergenic
GGAAGGTTGATAGCTTCAAT+CGG 0.587880 2:+3329688 MsaT006249.1:CDS
ATCAACTTCCGTGATGTGAA+TGG 0.588535 2:+3331021 MsaT006249.1:CDS
TGGTTCAGTATCCAGAGGCA+CGG 0.589109 2:+3333698 MsaT006249.1:CDS
CCAAATGTGTTAGATAAGGA+CGG 0.589381 2:+3330922 MsaT006249.1:CDS
ATGGAATCTGTACTTAGAGA+AGG 0.591073 2:-3328142 None:intergenic
TATATTACGCTGGAGACGCA+AGG 0.591215 2:+3333522 MsaT006249.1:CDS
TCAGAGGAAGCAGTTAACTC+AGG 0.592126 2:+3332184 MsaT006249.1:CDS
GTACTCATGGCTTCTTCACA+AGG 0.592724 2:+3330879 MsaT006249.1:CDS
AAGGCACGCAAGTCAGGACA+TGG 0.593229 2:+3332263 MsaT006249.1:CDS
ACCCGCCCAACCTTGTGAGG+AGG 0.594990 2:-3330514 None:intergenic
GAAGTAAAAGATACAAGAGA+AGG 0.595220 2:-3328568 None:intergenic
GAGACGCACATTATTGGATA+GGG 0.598920 2:+3329653 MsaT006249.1:CDS
GCTGATCCTGAGACAGAGAT+GGG 0.599008 2:-3329821 None:intergenic
TGGAGAAGATTATATTACGC+TGG 0.599494 2:+3333512 MsaT006249.1:CDS
TGAAGAGACAGTTGATGATG+TGG 0.599942 2:+3333909 MsaT006249.1:CDS
GGCACGGGCTCAATACCGGC+GGG 0.603077 2:+3333714 MsaT006249.1:CDS
TCACACCAGAACCTCATACA+AGG 0.603894 2:+3325105 MsaT006249.1:CDS
AGTAACAAGTCAAATATTGG+AGG 0.604680 2:+3328034 MsaT006249.1:CDS
GTGTTAGATAAGGACGGGCA+GGG 0.607032 2:+3330928 MsaT006249.1:CDS
ATGTTTGACAGTGAACCAGA+TGG 0.611986 2:-3328595 None:intergenic
CAACAACATTTAGCACCCGC+CGG 0.612322 2:-3333729 None:intergenic
AGGTTGATAGCTTCAATCGG+TGG 0.616053 2:+3329691 MsaT006249.1:CDS
TCAGAATGCAGTCCTTTCAG+AGG 0.617424 2:+3332168 MsaT006249.1:CDS
TTACACTGCTACTATGCACA+TGG 0.621437 2:+3326374 MsaT006249.1:CDS
GCCGTCAACCATTCACATCA+CGG 0.625473 2:-3331029 None:intergenic
GTAATGGACAAATACTATGT+GGG 0.627618 2:-3326898 None:intergenic
TAACTGGTCCTGTATGTTTG+GGG 0.627629 2:+3330438 MsaT006249.1:CDS
AATTTGGTTTGTTAGATCAG+CGG 0.629095 2:+3332219 MsaT006249.1:CDS
AATTTGAAGCCCAACATCGG+TGG 0.629491 2:+3325030 MsaT006249.1:CDS
TGACAGTGAACCAGATGGGA+TGG 0.634895 2:-3328590 None:intergenic
ATATTACGCTGGAGACGCAA+GGG 0.638430 2:+3333523 MsaT006249.1:CDS
AGCACCGTTGGTAAAATCAA+CGG 0.639445 2:-3316341 None:intergenic
CAGCTATACATCTTTACGTG+AGG 0.645356 2:+3328177 MsaT006249.1:CDS
TGCCTCTGGATACTGAACCA+TGG 0.651788 2:-3333695 None:intergenic
AGAACGAACTGCAACACCTG+TGG 0.652141 2:+3332052 MsaT006249.1:CDS
AGGCACGGGCTCAATACCGG+CGG 0.652244 2:+3333713 MsaT006249.1:CDS
TCTGCACTCCATGAAATACC+AGG 0.652778 2:-3329762 None:intergenic
ACTCCATGAAATACCAGGTG+AGG 0.654729 2:-3329757 None:intergenic
GATTACTAAAGCCCTTGGAG+AGG 0.655490 2:+3329713 MsaT006249.1:CDS
GTCCATGGTTCAGTATCCAG+AGG 0.662585 2:+3333693 MsaT006249.1:CDS
TGTTTGACAGTGAACCAGAT+GGG 0.678859 2:-3328594 None:intergenic
TGTGTAGATCATCCACTGTG+AGG 0.678956 2:-3331980 None:intergenic
GTGGCCTTACTATTGGAGCA+GGG 0.681723 2:+3328665 MsaT006249.1:CDS
GTTGTGGGAATGCCAGACGA+CGG 0.686833 2:-3328106 None:intergenic
AGAGACAGTTGATGATGTGG+AGG 0.690553 2:+3333912 MsaT006249.1:CDS
GATGGATATATCACGACACA+AGG 0.693721 2:+3330816 MsaT006249.1:CDS
CCACTGTGAGGGATTCAAGG+TGG 0.711850 2:-3331968 None:intergenic
AGGAAACACTGATAGCAATG+AGG 0.728312 2:+3328054 MsaT006249.1:CDS
TTATGCTGAGTCGGACACTG+AGG 0.731593 2:+3329878 MsaT006249.1:CDS
ACAGTGGATGATCTACACAA+AGG 0.736335 2:+3331984 MsaT006249.1:CDS
AGACAGAGATGGGCTCAGGG+AGG 0.741162 2:-3329811 None:intergenic
CCACCTTGAATCCCTCACAG+TGG 0.741963 2:+3331968 MsaT006249.1:CDS
AGAAGGATCAGCATGCAACG+AGG 0.766349 2:-3328551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 3316295 3333996 3316295 ID=MsaG006249
Chr2 mRNA 3316295 3333996 3316295 ID=MsaT006249.1;Parent=MsaG006249
Chr2 exon 3316295 3316358 3316295 ID=MsaT006249.1.exon1;Parent=MsaT006249.1
Chr2 CDS 3316295 3316358 3316295 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3316802 3316828 3316802 ID=MsaT006249.1.exon2;Parent=MsaT006249.1
Chr2 CDS 3316802 3316828 3316802 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3325015 3325134 3325015 ID=MsaT006249.1.exon3;Parent=MsaT006249.1
Chr2 CDS 3325015 3325134 3325015 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3326059 3326174 3326059 ID=MsaT006249.1.exon4;Parent=MsaT006249.1
Chr2 CDS 3326059 3326174 3326059 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3326356 3326444 3326356 ID=MsaT006249.1.exon5;Parent=MsaT006249.1
Chr2 CDS 3326356 3326444 3326356 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3326893 3326932 3326893 ID=MsaT006249.1.exon6;Parent=MsaT006249.1
Chr2 CDS 3326893 3326932 3326893 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3328034 3328211 3328034 ID=MsaT006249.1.exon7;Parent=MsaT006249.1
Chr2 CDS 3328034 3328211 3328034 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3328425 3328717 3328425 ID=MsaT006249.1.exon8;Parent=MsaT006249.1
Chr2 CDS 3328425 3328717 3328425 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3329372 3329899 3329372 ID=MsaT006249.1.exon9;Parent=MsaT006249.1
Chr2 CDS 3329372 3329899 3329372 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3330388 3331042 3330388 ID=MsaT006249.1.exon10;Parent=MsaT006249.1
Chr2 CDS 3330388 3331042 3330388 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3331811 3332394 3331811 ID=MsaT006249.1.exon11;Parent=MsaT006249.1
Chr2 CDS 3331811 3332394 3331811 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3333448 3333771 3333448 ID=MsaT006249.1.exon12;Parent=MsaT006249.1
Chr2 CDS 3333448 3333771 3333448 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Chr2 exon 3333883 3333996 3333883 ID=MsaT006249.1.exon13;Parent=MsaT006249.1
Chr2 CDS 3333883 3333996 3333883 ID=cds.MsaT006249.1;Parent=MsaT006249.1
Gene Sequence

>MsaT006249.1

ATGGCATCAAAGTTTTCACTCATTCTCTGCATCATTGCCATCTGTGCCGTTGATTTTACCAACGTGTCTGATACACCTGCTGCTGCTCCTGACATTCAACAATTACAATTTGAAGCCCAACATCGGTGGTTGCGACCGGCAGAAATTTGTGAAATTCTTCGTAATTATCGGATGTTTCATATCACACCAGAACCTCATACAAGGCCACCGAGTGGTTCACTTTTTCTTTTTGACCGGAAGGTTTTGAGATACTTTAGAAAGGACGGGCATAATTGGAGAAAGAAAAAAGATGGAAAAACTGTGAAAGAAGCTCATGAAAAATTAAAGGTGGGAAGTGTTGATGCGTTACACTGCTACTATGCACATGGAGAAGAAAACGAAAATTTTCAAAGGCGAAGCTATTGGTTGCTTGAACAGGATACCCACATAGTATTTGTCCATTACTTGGAAGTTAAGAGTAACAAGTCAAATATTGGAGGAAACACTGATAGCAATGAGGTCATATCAGATTCTCAAAAGGTCAACTCTCCGTCGTCTGGCATTCCCACAACTTATAGTAGTGTGCCTTCTCTAAGTACAGATTCCATGAGCCCAACTAGCAGCTATACATCTTTACGTGAGGATGCTGATTCAGGCGATCATGGACAGTCATCAGTTTCTGGAATGGATTATATCCCACCTTTTAACAGGGATACATTTAGAGGAAATGGTGCTACTTGCATTGATGGCCAGGCAACATGGGACACAGTCTTGCAATGCACCTCGTTGCATGCTGATCCTTCTCTTGTATCTTTTACTTCCATCCCATCTGGTTCACTGTCAAACATCCTTGACCAAGAAGATAACATTTTGGGTGACTTTTCTATGAGCAGAAGTGGCCTTACTATTGGAGCAGGGAGTTCTCAGCCTCTCCAATCAAATTGGCAGATTCCTTTTGACGACAACACGGGACATATGCCAACCTTTACCCAATCATTGAGTTTGGAATTTGCATCTGATTATGGAACTGGTTTACTAGGGAACGAAGCTGATAATGGAAGTTCTGTAATTGATCCTGTCTTGTTTAGTTTTCATGGTGAGCCAAAAGAGAAGCTTGCACAACAAAACTATTTGGAAGAGAAGGTAGATGGACACCTGCGAGATGACCTTAAGTCTAATTCCACAAAAGAAGTTCCTAGTGAAGAAACTATTAATTATCCCTTACCTGTGAGACGCACATTATTGGATAGGGATGAGAGCTTGAGGAAGGTTGATAGCTTCAATCGGTGGATTACTAAAGCCCTTGGAGAGGTGGACGATTTGAATATGCAATCCTCACCTGGTATTTCATGGAGTGCAGATGATTGTGGGCATGTGATAGATGATACCTCCCTGAGCCCATCTCTGTCTCAGGATCAGCTGTATAGCATAGCTGATTTTTCACCTAAATGGGCTTATGCTGAGTCGGACACTGAGGTGTTGATTATTGGATCCTTTTTGAAAAGTCAACCAGATGTTACAACCTGTAACTGGTCCTGTATGTTTGGGGAAGTTGAGGTTCCTGCTGAGGTTGTAGCTAATGGAATTCTGTGTTGTCAAGCTCCTCCTCACAAGGTTGGGCGGGTCCCTTTCTATGTAACATGTGCCAATAGGTTAGCTTGCAGTGAAGTGCGTGAATTTGATTTCAGAGACGGCTATTCTAGAAATGTAGATTATACAGATTTTTTCAACAGTTCGAATGACATGCTACTTCATTTGCGGCTGGAGGAGTTTCTTTCTTTGAAACCAGTGCACCCTTCAAATCAAACCTTTGAGGGCGATACAGAGAAAAGGAGCTTAATTCTTAAGCTTATTTCACTGAGAGAGGAAGAAGAATATTCAAGTAAGGAAGAGCAGACTGTAGAGATGGATATATCACGACACAAGGTGAAGAAGCATCTGTTTCATAGGCAGTTTAAAGAGAAACTGTACTCATGGCTTCTTCACAAGGTAACTGAGAGTGGTAAAGGGCCAAATGTGTTAGATAAGGACGGGCAGGGCGTGCTACATTTAGCAGCTGTTCTTGATTATGACTGGGCAATAAGCCCAATTTTAGCTGCTGGAGTTAATATCAACTTCCGTGATGTGAATGAGCGGACAGTTGGCTTCCTTGTATCCAAGGGTGCTGATTCTGGAGCATTGACGGATCCATCTCCAGAATCTCCTTCAGGCAGAACAGCTGCAGATCTCGCCTCTAGCAATGGGCACAAAGGGCTCTCTGGTTTTCTAGCAGAGTCTTCATTAACCAGCCACCTTGAATCCCTCACAGTGGATGATCTACACAAAGGTAGTCAGCAAGAAGTTTCAGGAACAAAAGCAGTGCAGACAGTTTCAGAACGAACTGCAACACCTGTGGTCTATAATGATACGCCTGAAACCCTCTGCCTTAAAGATTCTCTGACTGCTTTCCGTAACGCGACACAAGCTGCTGATCGCATACATCAAGTATTCAGAATGCAGTCCTTTCAGAGGAAGCAGTTAACTCAGGATGAGGATGATGAATTTGGTTTGTTAGATCAGCGGGCTCTTTCTCTTCTAGCTTCTAAGGCACGCAAGTCAGGACATGGAGATGGCTTAGTCGTCAATGCTGCTGCAACTCAAATACAGAAAAAGTTCCGTGGTTGGAAGAAGAGAAAAGAATTCCTGATCATTCGTCAAAGAATTGTTAAAATCCAGGCCCATGTAAGAGGTCACCAGGTAAGGAAGCAGTATAAAACTGTCATCTGGTCTGTGGGAATCCTGGAGAAGATTATATTACGCTGGAGACGCAAGGGCAGTGGTCTGCGTGGGTTTCGACCAGAAGCCCTTAATAAAGCCCCCAGTCAACAAAATGATTCTCTGAAAGAGGATGATTACGATTATTTAAAGGAAGGGCGAAAACAAAAAGAGGAAAAGATCGAAAAGGCCCTTTCTAGGGTGAAGTCCATGGTTCAGTATCCAGAGGCACGGGCTCAATACCGGCGGGTGCTAAATGTTGTTGAAGACTTCCGTCAGAAGAAGGATTGTAATATGGGTTTGATGAGTTCTGAAGAGACAGTTGATGATGTGGAGGATTTGATTGATATTGATATGCTTCTAGATGATGAAAATTTCAACCCTATAGCATTTGATTGA

Protein sequence

>MsaT006249.1

MASKFSLILCIIAICAVDFTNVSDTPAAAPDIQQLQFEAQHRWLRPAEICEILRNYRMFHITPEPHTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQDTHIVFVHYLEVKSNKSNIGGNTDSNEVISDSQKVNSPSSGIPTTYSSVPSLSTDSMSPTSSYTSLREDADSGDHGQSSVSGMDYIPPFNRDTFRGNGATCIDGQATWDTVLQCTSLHADPSLVSFTSIPSGSLSNILDQEDNILGDFSMSRSGLTIGAGSSQPLQSNWQIPFDDNTGHMPTFTQSLSLEFASDYGTGLLGNEADNGSSVIDPVLFSFHGEPKEKLAQQNYLEEKVDGHLRDDLKSNSTKEVPSEETINYPLPVRRTLLDRDESLRKVDSFNRWITKALGEVDDLNMQSSPGISWSADDCGHVIDDTSLSPSLSQDQLYSIADFSPKWAYAESDTEVLIIGSFLKSQPDVTTCNWSCMFGEVEVPAEVVANGILCCQAPPHKVGRVPFYVTCANRLACSEVREFDFRDGYSRNVDYTDFFNSSNDMLLHLRLEEFLSLKPVHPSNQTFEGDTEKRSLILKLISLREEEEYSSKEEQTVEMDISRHKVKKHLFHRQFKEKLYSWLLHKVTESGKGPNVLDKDGQGVLHLAAVLDYDWAISPILAAGVNINFRDVNERTVGFLVSKGADSGALTDPSPESPSGRTAADLASSNGHKGLSGFLAESSLTSHLESLTVDDLHKGSQQEVSGTKAVQTVSERTATPVVYNDTPETLCLKDSLTAFRNATQAADRIHQVFRMQSFQRKQLTQDEDDEFGLLDQRALSLLASKARKSGHGDGLVVNAAATQIQKKFRGWKKRKEFLIIRQRIVKIQAHVRGHQVRKQYKTVIWSVGILEKIILRWRRKGSGLRGFRPEALNKAPSQQNDSLKEDDYDYLKEGRKQKEEKIEKALSRVKSMVQYPEARAQYRRVLNVVEDFRQKKDCNMGLMSSEETVDDVEDLIDIDMLLDDENFNPIAFD*