AlfalfaGEDB | MsaG006258

M. sativa ssp. caerulea / MsaG006258

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006258	XP_003593218.2	95.707	792	32	1	1	790	15	806	0.0	1433

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006258	sp\|Q9LME6\|MBD8_ARATH	45.752	153	61	3	123	253	238	390	4.44e-33	138

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006258	tr\|G7IPJ6\|G7IPJ6_MEDTR	95.707	792	32	1	1	790	15	806	0.0	1433

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006258	TF	C2H2

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006258	MtrunA17_Chr2g0279291	95.707	792	32	1	1	790	15	806	0.0	1433
MsaG006258	MtrunA17_Chr3g0115871	35.216	301	146	10	4	261	23	317	1.77e-29	125

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006258	AT1G22310.1	45.752	153	61	3	123	253	139	291	1.09e-34	138
MsaG006258	AT1G22310.2	45.752	153	61	3	123	253	238	390	4.51e-34	138

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Find 205 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACTTTATGACAGAAC+TGG	0.462546	2:+3446922	None:intergenic
AAAATGGAAAAGAGCTTGAC+TGG	0.520687	2:-3446606	MsaT006258.1:CDS
AAACGGTGTTGTGATTGATT+TGG	0.447212	2:-3448551	MsaT006258.1:CDS
AAAGAATCCAAAGATTGTTC+TGG	0.310627	2:+3446090	None:intergenic
AAAGGAAAGATGGTCGTGCT+TGG	0.491157	2:-3448327	MsaT006258.1:CDS
AACGATTACCAGTCTAAAGA+TGG	0.519030	2:+3444997	None:intergenic
AACTGGACACATGAATCCAA+CGG	0.616659	2:+3445079	None:intergenic
AAGAATCCAAAGATTGTTCT+GGG	0.453262	2:+3446091	None:intergenic
AAGGACGGAGGGGTTAAAGG+AGG	0.627983	2:-3448482	MsaT006258.1:CDS
AAGGAGGAAGAGGAGTTGTT+AGG	0.257264	2:-3448466	MsaT006258.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	3445010	3449001	3445010	ID=MsaG006258
Chr2	mRNA	3445010	3449001	3445010	ID=MsaT006258.1;Parent=MsaG006258
Chr2	exon	3445010	3445354	3445010	ID=MsaT006258.1.exon3;Parent=MsaT006258.1
Chr2	CDS	3445010	3445354	3445010	ID=cds.MsaT006258.1;Parent=MsaT006258.1
Chr2	exon	3446068	3447397	3446068	ID=MsaT006258.1.exon2;Parent=MsaT006258.1
Chr2	CDS	3446068	3447397	3446068	ID=cds.MsaT006258.1;Parent=MsaT006258.1
Chr2	exon	3448304	3449001	3448304	ID=MsaT006258.1.exon1;Parent=MsaT006258.1
Chr2	CDS	3448304	3449001	3448304	ID=cds.MsaT006258.1;Parent=MsaT006258.1

Gene Sequence

>MsaT006258.1

ATGGAATGGTTAACTTCAATTGATTCAACAACTCTCACACATTCAGAGCTTCAAGCACTTTCTCTCTCTTCTCTCTCTTCCTTCGACCTCAAATCTACAAGCGAAATCGTCACTCCTAAAATCGATCCTTCAACCTTCAACCACAGCGCTGGGTCCCACCGCACCTACTCCCGACCTCACCGCCGATGTCGCGTCGCGCCGCCACTTCTTCCTACTCCCACTCTCCCCTCCGACCACCGCATCATCATCGATTACCTCAAACAGTTCATCAGAGAAGATCCGAAGTTCGACACTGTTGAGCTTCGGAATCCTTCAATTCCGGAGGTGAAGGAATTTCCATTGGCATTGCCTGGTGGTGAAGTGAGGAAGAGGAAGAGAGGGAGGAAACCGAAAGTGAAAACGCATTTGGAGGAAGAGATTGTGAACAAAAACGGTGTTGTGATTGATTTGGCGGCGTTATCGGAGGTGGAGCATCCGTTTGCGGCGGAGATAGCGAGAAGGACGGAGGGGTTAAAGGAGGAAGAGGAGTTGTTAGGGTTTTTGAGTGATTTGGTTGGGCAGTGGGGAAGTAGGAGGAGGAAGAGGAGGATTGTTGATGCTTCTGATTTTGGTGATGTGTTGCCTTTGGGATGGAAGCTTCTTCTTAGTTTGAAAAGGAAAGATGGTCGTGCTTGGATTTATTGCCGCAGATATATAAGTCCTAATGGACAGCAGTTTCTGTCTTGCAAAGAAGTTTCTTCGTATCTGCAGTCTCTTTTTGGTCACACTGATACACAGTTACAAATCACTCAAAGGAGTGAAAATGTACTTCCGGAACAGAGAGTGACTACTGAAAATGTAAGTACCCCTGCTGCTGCTTCTGTTGCCCGCGAGGAGCAGGACCAACGACAGATTGTTGCCACTAACTCAAATGTGTCTGGTTTGTCCGTCTCTAATGAACGATTCAAGGAAATTGCCTTGCTGGAAATGGAGAACCTTGCAGATGTGCAAATACATGATCTGTTTGAATGTCACAAGTGCAGCTTGACCTTTGATGAGAAGGATGCATATTTGCAGCACCTGTTGTCTATTCATCAGAAGACAACGAGGCGGTATCGACTTGGTTCATCCGTTTCAGATGGAGTTATAATTAAAGATGGAAAATTTGAGTGCCAGTTCTGTCATAAAGTGTTTTTGGAAAAACGTCGCTACAATAGTCATGTTGGGATTCATGTTAGGAATTATTTGAGGAGAGCTGAAGATTTGCCGGGTCAGCCTAATGTCCTGGGAGCAGAAGAGTCTCCAGTCACGGATGAGACACCTTCAAGGATCACGAAGATGGATGCCCTCATCGAAATTGCTCAAAACTCTATTATAGAGGATTCTATCATGGAGCCATCCTCTACACTAAATACGATACCTGTTTCAGAAATTGCGGTTGGCGACTTAGATGAAGATATAAATGCTGAGTCTCCATTCGGTGAACAGAAAATGGAAAAGAGCTTGACTGGCACAAATGTAGTTAGCGATCTAAATCAGCAAGGTAGTCCTCGTTTACCGATGGATGGAACAATAGAGGAAATTGATGCTAATAACCGAGTTGTTGATGCAAAGATGGTTAGTTTTCTAGATAACACTGGTTTGTTATCTGTAAATAAGAAAAATGTTGATGCACCTGATACTTCTGAAGGTAAAGGTGATGTGGCGCTGACTGTTGAGGGGTTTGATCATTCTGGGAGTGAACTGCAAGGAGCTTCTCAAAGTCCCTTGCTTCATTCATCTGGGAATCACATGAAACCTGGATCCAAGAAGAGTGAAAATTCTGGTTGCACTAATACTAAGGGGGATCTTAAATTTGATGAAGACAGTAGCAATAAGAGTGACTTGAAAATTGGTTTAGATAGCTGCAATGATGTACCTGGTGTTTCTAATGTTCATGTGACAGCAATGCCAACTTCTAAAGAAAATGTGGTCCAATCTAAGGTTTCTAACCCCTCGGTATCCCCAGAACAATCTTTGGATTCTTTTTCTGCATTCAGCTCCGACAAGGGGTTCCAGGAATTGAGGTTAGAAGATATTAGTTCTCTTGAGTATGATTTTGCAAGTGTTCAAGGTTCTCTTGATGTGTCAACTGAATTGGCAAATGACATAGTGGTGCAAGGGACATGTGCATCCTCAGCTCAGTCTGCATCACAAGAAGTTATGTTAAATATGGATTACAAAAATCAGCTCACAACCACATGTGTATGGTGTGGAATAGAGTTTAACCATGATGCTGTTAATTCTGAAATACAATCAGATTCCGTTGGATTCATGTGTCCAGTTTGCAAGGCAAAAATCTCTGGTCAAATCAATGTGTTGGACAGTGGATCACCAAATGCTGGCCATCTTTAG

Protein sequence

>MsaT006258.1

MEWLTSIDSTTLTHSELQALSLSSLSSFDLKSTSEIVTPKIDPSTFNHSAGSHRTYSRPHRRCRVAPPLLPTPTLPSDHRIIIDYLKQFIREDPKFDTVELRNPSIPEVKEFPLALPGGEVRKRKRGRKPKVKTHLEEEIVNKNGVVIDLAALSEVEHPFAAEIARRTEGLKEEEELLGFLSDLVGQWGSRRRKRRIVDASDFGDVLPLGWKLLLSLKRKDGRAWIYCRRYISPNGQQFLSCKEVSSYLQSLFGHTDTQLQITQRSENVLPEQRVTTENVSTPAAASVAREEQDQRQIVATNSNVSGLSVSNERFKEIALLEMENLADVQIHDLFECHKCSLTFDEKDAYLQHLLSIHQKTTRRYRLGSSVSDGVIIKDGKFECQFCHKVFLEKRRYNSHVGIHVRNYLRRAEDLPGQPNVLGAEESPVTDETPSRITKMDALIEIAQNSIIEDSIMEPSSTLNTIPVSEIAVGDLDEDINAESPFGEQKMEKSLTGTNVVSDLNQQGSPRLPMDGTIEEIDANNRVVDAKMVSFLDNTGLLSVNKKNVDAPDTSEGKGDVALTVEGFDHSGSELQGASQSPLLHSSGNHMKPGSKKSENSGCTNTKGDLKFDEDSSNKSDLKIGLDSCNDVPGVSNVHVTAMPTSKENVVQSKVSNPSVSPEQSLDSFSAFSSDKGFQELRLEDISSLEYDFASVQGSLDVSTELANDIVVQGTCASSAQSASQEVMLNMDYKNQLTTTCVWCGIEFNHDAVNSEIQSDSVGFMCPVCKAKISGQINVLDSGSPNAGHL*