Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006319 | XP_024632394.1 | 93.469 | 245 | 4 | 1 | 12 | 244 | 1 | 245 | 2.29e-162 | 459 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006319 | sp|Q6EP49|MAD27_ORYSJ | 59.414 | 239 | 83 | 3 | 12 | 237 | 1 | 238 | 1.24e-89 | 267 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006319 | tr|G7IS85|G7IS85_MEDTR | 93.443 | 244 | 4 | 1 | 12 | 243 | 1 | 244 | 4.76e-161 | 456 |
Gene ID | Type | Classification |
---|---|---|
MsaG006319 | TF | MADS-MIKC |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006319 | MtrunA17_Chr2g0279821 | 92.857 | 238 | 5 | 1 | 12 | 237 | 1 | 238 | 1.65e-159 | 441 |
MsaG006319 | MtrunA17_Chr5g0411691 | 59.149 | 235 | 76 | 5 | 12 | 228 | 1 | 233 | 7.43e-88 | 260 |
MsaG006319 | MtrunA17_Chr4g0049541 | 59.556 | 225 | 74 | 5 | 12 | 222 | 1 | 222 | 5.13e-81 | 242 |
MsaG006319 | MtrunA17_Chr5g0427961 | 53.073 | 179 | 70 | 1 | 59 | 237 | 4 | 168 | 1.28e-57 | 181 |
MsaG006319 | MtrunA17_Chr3g0077501 | 44.633 | 177 | 83 | 3 | 12 | 174 | 1 | 176 | 1.21e-40 | 139 |
MsaG006319 | MtrunA17_Chr8g0380021 | 38.095 | 231 | 114 | 6 | 11 | 224 | 16 | 234 | 2.15e-38 | 134 |
MsaG006319 | MtrunA17_Chr2g0284911 | 42.442 | 172 | 86 | 2 | 11 | 169 | 15 | 186 | 8.27e-36 | 127 |
MsaG006319 | MtrunA17_Chr4g0061671 | 36.264 | 182 | 102 | 3 | 12 | 180 | 1 | 181 | 2.66e-35 | 124 |
MsaG006319 | MtrunA17_Chr4g0061691 | 40.606 | 165 | 84 | 3 | 12 | 162 | 1 | 165 | 6.83e-35 | 124 |
MsaG006319 | MtrunA17_Chr3g0097101 | 39.759 | 166 | 87 | 2 | 2 | 154 | 6 | 171 | 1.90e-33 | 121 |
MsaG006319 | MtrunA17_Chr7g0220121 | 35.468 | 203 | 114 | 5 | 12 | 200 | 1 | 200 | 3.09e-33 | 120 |
MsaG006319 | MtrunA17_Chr8g0351051 | 33.884 | 242 | 125 | 7 | 12 | 227 | 1 | 233 | 4.33e-33 | 120 |
MsaG006319 | MtrunA17_Chr8g0366231 | 38.182 | 165 | 88 | 3 | 12 | 162 | 1 | 165 | 1.51e-32 | 119 |
MsaG006319 | MtrunA17_Chr5g0420081 | 38.043 | 184 | 96 | 4 | 12 | 177 | 1 | 184 | 5.72e-32 | 117 |
MsaG006319 | MtrunA17_Chr7g0246431 | 41.176 | 170 | 85 | 3 | 12 | 167 | 1 | 169 | 6.53e-32 | 116 |
MsaG006319 | MtrunA17_Chr6g0455511 | 36.170 | 188 | 107 | 2 | 12 | 186 | 1 | 188 | 1.45e-31 | 116 |
MsaG006319 | MtrunA17_Chr7g0220111 | 37.640 | 178 | 98 | 2 | 12 | 176 | 1 | 178 | 5.73e-31 | 114 |
MsaG006319 | MtrunA17_Chr5g0427401 | 41.176 | 170 | 87 | 2 | 12 | 169 | 1 | 169 | 6.67e-31 | 114 |
MsaG006319 | MtrunA17_Chr5g0412461 | 35.443 | 237 | 124 | 6 | 12 | 234 | 1 | 222 | 1.23e-30 | 113 |
MsaG006319 | MtrunA17_Chr8g0351031 | 39.205 | 176 | 83 | 4 | 12 | 168 | 1 | 171 | 2.03e-30 | 112 |
MsaG006319 | MtrunA17_Chr4g0057151 | 38.674 | 181 | 86 | 3 | 12 | 173 | 1 | 175 | 8.41e-30 | 110 |
MsaG006319 | MtrunA17_Chr5g0412271 | 40.476 | 168 | 85 | 3 | 12 | 165 | 1 | 167 | 8.50e-30 | 111 |
MsaG006319 | MtrunA17_Chr8g0351041 | 38.922 | 167 | 78 | 4 | 12 | 159 | 1 | 162 | 8.74e-30 | 109 |
MsaG006319 | MtrunA17_Chr5g0420091 | 36.224 | 196 | 101 | 5 | 12 | 190 | 1 | 189 | 6.25e-28 | 105 |
MsaG006319 | MtrunA17_Chr3g0122251 | 37.430 | 179 | 95 | 3 | 12 | 173 | 1 | 179 | 2.21e-27 | 105 |
MsaG006319 | MtrunA17_Chr4g0049901 | 36.792 | 212 | 116 | 4 | 8 | 202 | 23 | 233 | 4.14e-27 | 104 |
MsaG006319 | MtrunA17_Chr4g0018421 | 37.647 | 170 | 91 | 4 | 12 | 166 | 1 | 170 | 2.96e-25 | 98.6 |
MsaG006319 | MtrunA17_Chr1g0204111 | 34.286 | 210 | 107 | 5 | 12 | 196 | 17 | 220 | 2.61e-24 | 97.4 |
MsaG006319 | MtrunA17_Chr1g0164791 | 32.468 | 231 | 119 | 9 | 12 | 219 | 1 | 217 | 2.68e-24 | 97.1 |
MsaG006319 | MtrunA17_Chr3g0142191 | 35.366 | 164 | 78 | 4 | 12 | 156 | 1 | 155 | 1.44e-23 | 95.1 |
MsaG006319 | MtrunA17_Chr6g0474371 | 35.838 | 173 | 96 | 3 | 12 | 169 | 1 | 173 | 1.32e-22 | 91.7 |
MsaG006319 | MtrunA17_Chr3g0125241 | 34.463 | 177 | 78 | 6 | 12 | 166 | 26 | 186 | 2.44e-21 | 88.6 |
MsaG006319 | MtrunA17_Chr4g0020221 | 39.241 | 158 | 73 | 3 | 12 | 150 | 1 | 154 | 4.07e-21 | 89.0 |
MsaG006319 | MtrunA17_Chr1g0159661 | 33.140 | 172 | 73 | 5 | 12 | 152 | 1 | 161 | 1.95e-18 | 80.1 |
MsaG006319 | MtrunA17_Chr5g0427921 | 66.667 | 60 | 8 | 1 | 12 | 59 | 1 | 60 | 3.21e-18 | 76.3 |
MsaG006319 | MtrunA17_Chr5g0404951 | 31.210 | 157 | 74 | 5 | 12 | 144 | 1 | 147 | 1.18e-15 | 73.6 |
MsaG006319 | MtrunA17_Chr1g0173161 | 53.226 | 62 | 17 | 1 | 12 | 61 | 1 | 62 | 7.71e-15 | 67.8 |
MsaG006319 | MtrunA17_Chr2g0308271 | 33.103 | 145 | 84 | 3 | 60 | 202 | 33 | 166 | 5.55e-14 | 68.6 |
MsaG006319 | MtrunA17_Chr2g0308251 | 46.377 | 69 | 25 | 1 | 12 | 68 | 1 | 69 | 2.22e-13 | 63.9 |
MsaG006319 | MtrunA17_Chr8g0377561 | 48.276 | 58 | 18 | 1 | 12 | 57 | 1 | 58 | 8.58e-12 | 60.1 |
MsaG006319 | MtrunA17_Chr7g0246381 | 45.902 | 61 | 21 | 1 | 12 | 60 | 1 | 61 | 5.52e-11 | 57.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsaG006319 | AT4G37940.1 | 58.772 | 228 | 76 | 4 | 12 | 226 | 1 | 223 | 2.42e-87 | 258 |
MsaG006319 | AT3G57230.1 | 55.000 | 240 | 87 | 4 | 12 | 235 | 1 | 235 | 1.81e-83 | 249 |
MsaG006319 | AT3G57230.4 | 55.000 | 240 | 87 | 4 | 12 | 235 | 1 | 235 | 1.81e-83 | 249 |
MsaG006319 | AT2G14210.2 | 58.091 | 241 | 82 | 4 | 12 | 239 | 1 | 235 | 2.43e-81 | 244 |
MsaG006319 | AT2G14210.1 | 58.159 | 239 | 81 | 4 | 12 | 237 | 1 | 233 | 9.02e-81 | 242 |
MsaG006319 | AT2G22630.1 | 54.585 | 229 | 88 | 2 | 12 | 228 | 1 | 225 | 3.81e-80 | 240 |
MsaG006319 | AT2G22630.2 | 54.585 | 229 | 88 | 2 | 12 | 228 | 1 | 225 | 3.81e-80 | 240 |
MsaG006319 | AT4G37940.4 | 55.263 | 228 | 70 | 5 | 12 | 226 | 1 | 209 | 5.10e-78 | 234 |
MsaG006319 | AT4G37940.3 | 67.123 | 146 | 36 | 1 | 12 | 145 | 1 | 146 | 5.69e-66 | 202 |
MsaG006319 | AT3G57230.2 | 66.667 | 141 | 35 | 1 | 12 | 140 | 1 | 141 | 3.29e-61 | 189 |
MsaG006319 | AT4G37940.2 | 55.689 | 167 | 68 | 3 | 61 | 226 | 1 | 162 | 7.65e-56 | 176 |
MsaG006319 | AT3G57230.5 | 49.505 | 202 | 87 | 5 | 42 | 235 | 7 | 201 | 1.43e-54 | 174 |
MsaG006319 | AT3G57230.3 | 49.505 | 202 | 87 | 5 | 42 | 235 | 7 | 201 | 1.43e-54 | 174 |
MsaG006319 | AT4G09960.5 | 39.256 | 242 | 120 | 5 | 10 | 234 | 9 | 240 | 1.62e-39 | 137 |
MsaG006319 | AT4G09960.1 | 39.167 | 240 | 119 | 5 | 12 | 234 | 1 | 230 | 2.38e-39 | 136 |
MsaG006319 | AT4G09960.6 | 39.167 | 240 | 119 | 5 | 12 | 234 | 2 | 231 | 2.81e-39 | 136 |
MsaG006319 | AT4G09960.3 | 39.004 | 241 | 120 | 5 | 11 | 234 | 26 | 256 | 3.03e-39 | 137 |
MsaG006319 | AT4G18960.1 | 42.857 | 182 | 91 | 2 | 11 | 179 | 16 | 197 | 6.11e-39 | 135 |
MsaG006319 | AT4G09960.2 | 47.712 | 153 | 59 | 3 | 12 | 147 | 1 | 149 | 1.11e-37 | 131 |
MsaG006319 | AT4G09960.4 | 38.776 | 245 | 119 | 6 | 11 | 234 | 95 | 329 | 7.37e-37 | 132 |
MsaG006319 | AT3G58780.1 | 40.571 | 175 | 85 | 3 | 11 | 169 | 15 | 186 | 1.72e-36 | 129 |
MsaG006319 | AT3G58780.5 | 40.571 | 175 | 85 | 3 | 11 | 169 | 21 | 192 | 1.85e-36 | 129 |
MsaG006319 | AT2G42830.1 | 38.624 | 189 | 93 | 4 | 1 | 169 | 1 | 186 | 3.38e-35 | 126 |
MsaG006319 | AT5G13790.1 | 45.294 | 170 | 75 | 3 | 12 | 169 | 1 | 164 | 5.51e-35 | 126 |
MsaG006319 | AT2G42830.2 | 36.598 | 194 | 100 | 4 | 1 | 174 | 1 | 191 | 1.01e-34 | 125 |
MsaG006319 | AT5G13790.2 | 45.087 | 173 | 74 | 4 | 12 | 169 | 1 | 167 | 1.26e-34 | 125 |
MsaG006319 | AT1G69120.2 | 38.372 | 172 | 92 | 3 | 12 | 169 | 1 | 172 | 1.29e-34 | 124 |
MsaG006319 | AT1G69120.1 | 38.372 | 172 | 92 | 3 | 12 | 169 | 1 | 172 | 2.00e-34 | 124 |
MsaG006319 | AT1G26310.1 | 39.080 | 174 | 90 | 3 | 12 | 169 | 1 | 174 | 3.58e-34 | 124 |
MsaG006319 | AT3G58780.4 | 44.521 | 146 | 62 | 3 | 11 | 140 | 15 | 157 | 2.14e-33 | 122 |
MsaG006319 | AT2G22540.3 | 39.303 | 201 | 105 | 3 | 12 | 195 | 1 | 201 | 6.88e-33 | 120 |
MsaG006319 | AT2G22540.1 | 39.303 | 201 | 105 | 3 | 12 | 195 | 1 | 201 | 6.88e-33 | 120 |
MsaG006319 | AT2G45660.1 | 39.766 | 171 | 88 | 3 | 12 | 168 | 1 | 170 | 7.25e-33 | 119 |
MsaG006319 | AT5G60910.1 | 38.953 | 172 | 91 | 3 | 12 | 169 | 1 | 172 | 1.08e-32 | 119 |
MsaG006319 | AT2G45660.2 | 40.764 | 157 | 78 | 3 | 12 | 154 | 1 | 156 | 1.18e-32 | 117 |
MsaG006319 | AT2G45650.1 | 40.000 | 155 | 81 | 1 | 12 | 154 | 1 | 155 | 2.28e-32 | 119 |
MsaG006319 | AT4G24540.1 | 33.921 | 227 | 121 | 5 | 12 | 219 | 1 | 217 | 4.60e-32 | 117 |
MsaG006319 | AT3G58780.2 | 38.286 | 175 | 82 | 3 | 11 | 169 | 15 | 179 | 7.87e-32 | 117 |
MsaG006319 | AT4G22950.2 | 40.805 | 174 | 83 | 5 | 12 | 169 | 1 | 170 | 1.60e-31 | 114 |
MsaG006319 | AT3G58780.3 | 35.500 | 200 | 85 | 4 | 11 | 169 | 15 | 211 | 8.66e-31 | 115 |
MsaG006319 | AT4G22950.3 | 39.535 | 172 | 86 | 3 | 12 | 168 | 1 | 169 | 9.42e-31 | 114 |
MsaG006319 | AT4G22950.1 | 39.535 | 172 | 86 | 3 | 12 | 168 | 1 | 169 | 9.42e-31 | 114 |
MsaG006319 | AT5G62165.3 | 37.427 | 171 | 92 | 3 | 12 | 168 | 1 | 170 | 2.50e-30 | 112 |
MsaG006319 | AT5G62165.1 | 37.427 | 171 | 92 | 3 | 12 | 168 | 1 | 170 | 2.50e-30 | 112 |
MsaG006319 | AT5G62165.2 | 37.427 | 171 | 92 | 3 | 12 | 168 | 1 | 170 | 2.50e-30 | 112 |
MsaG006319 | AT3G61120.1 | 41.026 | 156 | 77 | 3 | 12 | 154 | 1 | 154 | 2.68e-29 | 110 |
MsaG006319 | AT2G22540.2 | 38.806 | 201 | 101 | 4 | 12 | 195 | 1 | 196 | 2.81e-29 | 110 |
MsaG006319 | AT4G11880.2 | 42.138 | 159 | 73 | 4 | 12 | 154 | 1 | 156 | 8.61e-29 | 107 |
MsaG006319 | AT4G11880.3 | 42.138 | 159 | 73 | 4 | 12 | 154 | 1 | 156 | 8.61e-29 | 107 |
MsaG006319 | AT5G62165.6 | 40.136 | 147 | 73 | 3 | 12 | 144 | 1 | 146 | 3.05e-28 | 105 |
MsaG006319 | AT5G62165.9 | 40.136 | 147 | 73 | 3 | 12 | 144 | 1 | 146 | 3.05e-28 | 105 |
MsaG006319 | AT5G62165.7 | 40.136 | 147 | 73 | 3 | 12 | 144 | 1 | 146 | 3.05e-28 | 105 |
MsaG006319 | AT5G62165.8 | 40.136 | 147 | 73 | 3 | 12 | 144 | 1 | 146 | 3.05e-28 | 105 |
MsaG006319 | AT5G62165.13 | 40.136 | 147 | 73 | 3 | 12 | 144 | 1 | 146 | 3.05e-28 | 105 |
MsaG006319 | AT5G62165.10 | 39.490 | 157 | 80 | 3 | 12 | 154 | 1 | 156 | 3.16e-28 | 106 |
MsaG006319 | AT5G62165.4 | 39.490 | 157 | 80 | 3 | 12 | 154 | 1 | 156 | 3.16e-28 | 106 |
MsaG006319 | AT3G57390.3 | 39.674 | 184 | 85 | 5 | 12 | 172 | 1 | 181 | 2.02e-27 | 105 |
MsaG006319 | AT5G51870.4 | 37.580 | 157 | 84 | 2 | 12 | 154 | 1 | 157 | 2.48e-27 | 105 |
MsaG006319 | AT5G51870.1 | 37.580 | 157 | 84 | 2 | 12 | 154 | 1 | 157 | 2.59e-27 | 104 |
MsaG006319 | AT5G62165.17 | 36.943 | 157 | 84 | 3 | 12 | 154 | 1 | 156 | 2.66e-27 | 103 |
MsaG006319 | AT5G62165.12 | 36.943 | 157 | 84 | 3 | 12 | 154 | 1 | 156 | 2.66e-27 | 103 |
MsaG006319 | AT5G62165.11 | 36.943 | 157 | 84 | 3 | 12 | 154 | 1 | 156 | 2.66e-27 | 103 |
MsaG006319 | AT3G02310.2 | 40.351 | 171 | 88 | 3 | 12 | 168 | 1 | 171 | 2.94e-27 | 104 |
MsaG006319 | AT5G51870.3 | 37.580 | 157 | 84 | 2 | 12 | 154 | 11 | 167 | 3.37e-27 | 104 |
MsaG006319 | AT3G57390.1 | 39.674 | 184 | 85 | 5 | 12 | 172 | 1 | 181 | 4.03e-27 | 105 |
MsaG006319 | AT5G15800.1 | 38.728 | 173 | 92 | 3 | 12 | 170 | 1 | 173 | 4.61e-27 | 105 |
MsaG006319 | AT4G11880.4 | 42.953 | 149 | 66 | 4 | 12 | 144 | 1 | 146 | 5.22e-27 | 104 |
MsaG006319 | AT4G11880.1 | 42.953 | 149 | 66 | 4 | 12 | 144 | 1 | 146 | 5.22e-27 | 104 |
MsaG006319 | AT5G15800.2 | 38.728 | 173 | 92 | 3 | 12 | 170 | 1 | 173 | 6.18e-27 | 105 |
MsaG006319 | AT3G30260.1 | 38.411 | 151 | 79 | 3 | 12 | 148 | 1 | 151 | 6.32e-27 | 104 |
MsaG006319 | AT2G03710.3 | 33.333 | 177 | 98 | 4 | 12 | 171 | 1 | 174 | 6.55e-27 | 102 |
MsaG006319 | AT1G24260.1 | 36.782 | 174 | 94 | 3 | 12 | 169 | 1 | 174 | 7.63e-27 | 104 |
MsaG006319 | AT1G24260.2 | 36.571 | 175 | 94 | 3 | 12 | 169 | 1 | 175 | 1.06e-26 | 103 |
MsaG006319 | AT3G02310.1 | 39.884 | 173 | 90 | 3 | 12 | 170 | 1 | 173 | 1.10e-26 | 103 |
MsaG006319 | AT2G03710.2 | 33.523 | 176 | 97 | 4 | 12 | 170 | 1 | 173 | 2.74e-26 | 103 |
MsaG006319 | AT2G03710.1 | 33.523 | 176 | 97 | 4 | 12 | 170 | 1 | 173 | 3.04e-26 | 103 |
MsaG006319 | AT5G51870.5 | 39.189 | 148 | 74 | 3 | 8 | 140 | 20 | 166 | 4.84e-26 | 100 |
MsaG006319 | AT1G24260.3 | 38.750 | 160 | 81 | 3 | 12 | 154 | 1 | 160 | 6.08e-26 | 101 |
MsaG006319 | AT5G51870.2 | 39.583 | 144 | 71 | 3 | 12 | 140 | 1 | 143 | 8.37e-26 | 99.8 |
MsaG006319 | AT5G51860.2 | 34.302 | 172 | 99 | 3 | 12 | 169 | 1 | 172 | 2.91e-25 | 99.0 |
MsaG006319 | AT5G51860.1 | 34.524 | 168 | 96 | 3 | 12 | 165 | 1 | 168 | 3.44e-25 | 99.0 |
MsaG006319 | AT5G23260.2 | 33.708 | 178 | 86 | 5 | 12 | 167 | 1 | 168 | 4.68e-21 | 89.0 |
MsaG006319 | AT5G23260.4 | 33.520 | 179 | 87 | 5 | 11 | 167 | 16 | 184 | 7.95e-21 | 89.0 |
MsaG006319 | AT3G54340.1 | 34.270 | 178 | 77 | 5 | 12 | 160 | 1 | 167 | 1.56e-20 | 87.4 |
MsaG006319 | AT5G23260.3 | 37.419 | 155 | 65 | 5 | 12 | 144 | 1 | 145 | 6.80e-19 | 83.2 |
MsaG006319 | AT5G23260.1 | 37.500 | 152 | 63 | 5 | 11 | 140 | 16 | 157 | 2.94e-18 | 81.6 |
MsaG006319 | AT5G10140.4 | 32.051 | 156 | 86 | 3 | 12 | 154 | 1 | 149 | 4.92e-18 | 79.3 |
MsaG006319 | AT5G65050.2 | 30.488 | 164 | 94 | 4 | 12 | 162 | 1 | 157 | 2.47e-17 | 77.4 |
MsaG006319 | AT5G20240.2 | 32.653 | 147 | 67 | 4 | 12 | 137 | 1 | 136 | 3.09e-17 | 76.6 |
MsaG006319 | AT5G65070.1 | 33.721 | 172 | 78 | 7 | 12 | 162 | 1 | 157 | 3.24e-17 | 77.8 |
MsaG006319 | AT5G10140.1 | 32.877 | 146 | 78 | 3 | 12 | 144 | 1 | 139 | 3.26e-17 | 77.4 |
MsaG006319 | AT5G10140.2 | 32.877 | 146 | 78 | 3 | 12 | 144 | 1 | 139 | 4.55e-17 | 76.6 |
MsaG006319 | AT5G10140.3 | 32.877 | 146 | 78 | 3 | 12 | 144 | 1 | 139 | 4.89e-17 | 77.0 |
MsaG006319 | AT5G65060.1 | 29.268 | 164 | 96 | 3 | 12 | 162 | 1 | 157 | 5.23e-17 | 77.0 |
MsaG006319 | AT5G65060.3 | 29.268 | 164 | 96 | 3 | 12 | 162 | 1 | 157 | 5.25e-17 | 77.0 |
MsaG006319 | AT5G65050.3 | 30.488 | 164 | 94 | 4 | 12 | 162 | 1 | 157 | 9.99e-17 | 76.3 |
MsaG006319 | AT5G20240.1 | 32.895 | 152 | 67 | 5 | 12 | 142 | 1 | 138 | 1.00e-16 | 76.6 |
MsaG006319 | AT5G62165.14 | 44.186 | 86 | 35 | 2 | 12 | 85 | 1 | 85 | 1.13e-16 | 73.9 |
MsaG006319 | AT5G65050.5 | 29.878 | 164 | 84 | 4 | 12 | 162 | 1 | 146 | 6.09e-16 | 73.9 |
MsaG006319 | AT1G71692.1 | 30.542 | 203 | 111 | 5 | 12 | 190 | 1 | 197 | 1.51e-15 | 73.6 |
MsaG006319 | AT4G18960.4 | 36.667 | 120 | 75 | 1 | 53 | 171 | 56 | 175 | 2.27e-15 | 72.4 |
MsaG006319 | AT5G65080.3 | 31.410 | 156 | 87 | 4 | 12 | 154 | 8 | 156 | 3.98e-15 | 72.0 |
MsaG006319 | AT5G65060.2 | 29.878 | 164 | 84 | 5 | 12 | 162 | 1 | 146 | 4.58e-15 | 71.6 |
MsaG006319 | AT5G65070.4 | 35.065 | 154 | 64 | 7 | 12 | 144 | 1 | 139 | 6.29e-15 | 70.1 |
MsaG006319 | AT4G18960.3 | 34.375 | 128 | 83 | 1 | 53 | 179 | 56 | 183 | 7.33e-15 | 72.0 |
MsaG006319 | AT4G18960.2 | 34.375 | 128 | 83 | 1 | 53 | 179 | 56 | 183 | 7.33e-15 | 72.0 |
MsaG006319 | AT1G31140.1 | 35.099 | 151 | 76 | 5 | 12 | 144 | 1 | 147 | 1.30e-14 | 70.9 |
MsaG006319 | AT5G65070.2 | 29.825 | 228 | 111 | 9 | 12 | 197 | 1 | 221 | 2.08e-14 | 70.5 |
MsaG006319 | AT1G69120.3 | 33.636 | 110 | 72 | 1 | 61 | 169 | 1 | 110 | 2.73e-14 | 69.7 |
MsaG006319 | AT5G65050.1 | 29.677 | 155 | 89 | 4 | 12 | 153 | 1 | 148 | 5.06e-14 | 68.6 |
MsaG006319 | AT1G31140.2 | 32.468 | 154 | 78 | 4 | 12 | 144 | 1 | 149 | 2.52e-13 | 67.4 |
MsaG006319 | AT5G65070.5 | 30.570 | 193 | 85 | 8 | 12 | 165 | 1 | 183 | 7.40e-13 | 65.9 |
MsaG006319 | AT1G77080.4 | 30.994 | 171 | 98 | 3 | 12 | 169 | 1 | 164 | 3.27e-12 | 63.9 |
MsaG006319 | AT5G60910.2 | 32.727 | 110 | 73 | 1 | 61 | 169 | 1 | 110 | 4.22e-12 | 63.2 |
MsaG006319 | AT1G77080.11 | 31.098 | 164 | 93 | 3 | 12 | 162 | 1 | 157 | 5.43e-12 | 62.8 |
MsaG006319 | AT1G77080.5 | 31.098 | 164 | 93 | 3 | 12 | 162 | 1 | 157 | 8.70e-12 | 62.4 |
Find 46 sgRNAs with CRISPR-Local
Find sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGATGGGTGAAGGACTTTC+TGG | 0.186396 | 2:+4183025 | MsaT006319.1:CDS |
GCGGCCAAAGTCATGAAATT+AGG | 0.227449 | 2:+4183775 | MsaT006319.1:CDS |
GAGGAAAGATTGCAATTAGA+AGG | 0.301640 | 2:+4162831 | MsaT006319.1:CDS |
AGTACTGCAGTTGTTGTCTC+AGG | 0.354912 | 2:-4182774 | None:intergenic |
CTTTCATGCACTATCAGAAA+TGG | 0.360004 | 2:+4183688 | MsaT006319.1:CDS |
TATTAAAGAACTACAGAATC+TGG | 0.361380 | 2:+4183054 | MsaT006319.1:CDS |
CACTGTATTGAGGCTGTGGC+TGG | 0.370216 | 2:-4183747 | None:intergenic |
ATCATAAAGCTTTCCAGTGC+TGG | 0.371505 | 2:-4162968 | None:intergenic |
GAAGGGTGTTCGAATGAAAA+AGG | 0.375892 | 2:+4183099 | MsaT006319.1:CDS |
GAGGCTGTGGCTGGCTTAGC+TGG | 0.381070 | 2:-4183738 | None:intergenic |
TGGTAAAACCAGGCAATTGA+TGG | 0.388570 | 2:+4183009 | MsaT006319.1:intron |
ATACCCTAATTTCATGACTT+TGG | 0.395052 | 2:-4183779 | None:intergenic |
GAATCCAGCTTCAGAAGTTA+AGG | 0.399355 | 2:+4176424 | MsaT006319.1:CDS |
GGTGAAGGACTTTCTGGGTT+GGG | 0.400040 | 2:+4183031 | MsaT006319.1:CDS |
CGGCCAAAGTCATGAAATTA+GGG | 0.418025 | 2:+4183776 | MsaT006319.1:CDS |
TCTGATAGTGCATGAAAGAT+TGG | 0.418090 | 2:-4183683 | None:intergenic |
ATTACCTTAACTTCTGAAGC+TGG | 0.442043 | 2:-4176428 | None:intergenic |
ACAGAATCTGGAAAACCAAC+TGG | 0.453238 | 2:+4183066 | MsaT006319.1:CDS |
TGGCTTAGCTGGAGACTGAT+AGG | 0.456839 | 2:-4183727 | None:intergenic |
TGTTGTACATTATCAGTTCA+AGG | 0.468769 | 2:-4183804 | None:intergenic |
AACTTCAGCATCACAAAGAA+TGG | 0.471309 | 2:-4162929 | None:intergenic |
ATTCTTTGTGATGCTGAAGT+TGG | 0.475030 | 2:+4162931 | MsaT006319.1:CDS |
TGATGGGTGAAGGACTTTCT+GGG | 0.476172 | 2:+4183026 | MsaT006319.1:CDS |
GAAAATAATAAGATGGGAAG+AGG | 0.478570 | 2:+4162812 | MsaT006319.1:CDS |
ATTTGGAGAAAATAATAAGA+TGG | 0.479310 | 2:+4162805 | MsaT006319.1:CDS |
GCCGCTGGTTCACTGTATTG+AGG | 0.490319 | 2:-4183757 | None:intergenic |
TTTGGAGAAAATAATAAGAT+GGG | 0.499686 | 2:+4162806 | MsaT006319.1:CDS |
AATATTAGGTTTATGAAGCA+AGG | 0.509301 | 2:+4183635 | MsaT006319.1:intron |
AAATGCAGAGCTACTGAAGA+AGG | 0.518281 | 2:+4183401 | MsaT006319.1:CDS |
CAAATTAGAAAGATGGAGAA+TGG | 0.519824 | 2:+4161774 | None:intergenic |
GGGTGAAGGACTTTCTGGGT+TGG | 0.523473 | 2:+4183030 | MsaT006319.1:CDS |
AATTTCATGACTTTGGCCGC+TGG | 0.524492 | 2:-4183772 | None:intergenic |
GCGCTACAACAAACAGAAAG+AGG | 0.534165 | 2:+4176385 | MsaT006319.1:CDS |
GATTAAAGAACTGCACCAAA+AGG | 0.544459 | 2:+4183234 | MsaT006319.1:CDS |
GTTGTACATTATCAGTTCAA+GGG | 0.554368 | 2:-4183803 | None:intergenic |
GGTTCACTGTATTGAGGCTG+TGG | 0.560349 | 2:-4183751 | None:intergenic |
GGTAAAACCAGGCAATTGAT+GGG | 0.560936 | 2:+4183010 | MsaT006319.1:intron |
CCTTCAGACTAATCTCCAGT+TGG | 0.563776 | 2:-4183081 | None:intergenic |
ACCAGGCAATTGATGGGTGA+AGG | 0.567810 | 2:+4183016 | MsaT006319.1:intron |
GTACTGCAGTTGTTGTCTCA+GGG | 0.569367 | 2:-4182773 | None:intergenic |
CCAACTGGAGATTAGTCTGA+AGG | 0.574247 | 2:+4183081 | MsaT006319.1:CDS |
TTTATGATTATTCAAGCACT+AGG | 0.585415 | 2:+4162983 | MsaT006319.1:CDS |
GGATTGACAATTCAACAAGC+AGG | 0.587181 | 2:+4162852 | MsaT006319.1:CDS |
CAACTGGAGATTAGTCTGAA+GGG | 0.603654 | 2:+4183082 | MsaT006319.1:CDS |
AGTACTTGCAAGAAAGCCAT+AGG | 0.622373 | 2:+4182791 | MsaT006319.1:CDS |
GCCTCAATACAGTGAACCAG+CGG | 0.680828 | 2:+4183756 | MsaT006319.1:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr2 | gene | 4161786 | 4183831 | 4161786 | ID=MsaG006319 |
Chr2 | mRNA | 4161786 | 4183831 | 4161786 | ID=MsaT006319.1;Parent=MsaG006319 |
Chr2 | exon | 4161786 | 4161795 | 4161786 | ID=MsaT006319.1.exon1;Parent=MsaT006319.1 |
Chr2 | CDS | 4161786 | 4161795 | 4161786 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4162801 | 4162877 | 4162801 | ID=MsaT006319.1.exon2;Parent=MsaT006319.1 |
Chr2 | CDS | 4162801 | 4162877 | 4162801 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4162913 | 4163004 | 4162913 | ID=MsaT006319.1.exon3;Parent=MsaT006319.1 |
Chr2 | CDS | 4162913 | 4163004 | 4162913 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4176367 | 4176445 | 4176367 | ID=MsaT006319.1.exon4;Parent=MsaT006319.1 |
Chr2 | CDS | 4176367 | 4176445 | 4176367 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4182751 | 4182812 | 4182751 | ID=MsaT006319.1.exon5;Parent=MsaT006319.1 |
Chr2 | CDS | 4182751 | 4182812 | 4182751 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4183021 | 4183120 | 4183021 | ID=MsaT006319.1.exon6;Parent=MsaT006319.1 |
Chr2 | CDS | 4183021 | 4183120 | 4183021 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4183214 | 4183255 | 4183214 | ID=MsaT006319.1.exon7;Parent=MsaT006319.1 |
Chr2 | CDS | 4183214 | 4183255 | 4183214 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4183339 | 4183422 | 4183339 | ID=MsaT006319.1.exon8;Parent=MsaT006319.1 |
Chr2 | CDS | 4183339 | 4183422 | 4183339 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Chr2 | exon | 4183643 | 4183831 | 4183643 | ID=MsaT006319.1.exon9;Parent=MsaT006319.1 |
Chr2 | CDS | 4183643 | 4183831 | 4183643 | ID=cds.MsaT006319.1;Parent=MsaT006319.1 |
Gene Sequence |
Protein sequence |