AlfalfaGEDB | MsaG006351

M. sativa ssp. caerulea / MsaG006351

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006351	XP_003593344.3	95.467	353	16	0	1	353	1	353	0.0	700

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006351	sp\|Q9T072\|BH025_ARATH	56.757	185	72	4	173	353	148	328	9.93e-59	196

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006351	tr\|A0A396J145\|A0A396J145_MEDTR	95.467	353	16	0	1	353	1	353	0.0	700

TFs/TRs:

Gene ID	Type	Classification
MsaG006351	TF	bHLH

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000006	MsaG006351	0.807459	8.500410e-50	1.365472e-47
MsaG000033	MsaG006351	0.810319	2.091424e-50	3.599494e-48
MsaG000163	MsaG006351	0.815102	1.899471e-51	3.681237e-49
MsaG000236	MsaG006351	0.810364	2.045692e-50	3.524698e-48
MsaG000464	MsaG006351	0.807197	9.653582e-50	1.541060e-47
MsaG000605	MsaG006351	0.816338	1.010724e-51	2.021273e-49
MsaG000680	MsaG006351	0.822603	3.821880e-53	9.008183e-51
MsaG000707	MsaG006351	0.864097	3.094109e-64	2.819774e-61
MsaG000977	MsaG006351	0.873081	3.983505e-67	5.267247e-64
MsaG001273	MsaG006351	0.843510	2.500941e-58	1.091660e-55
MsaG001853	MsaG006351	0.837024	1.215575e-56	4.326966e-54
MsaG002536	MsaG006351	0.825475	8.157174e-54	2.078919e-51
MsaG002558	MsaG006351	0.816648	8.618935e-52	1.737319e-49
MsaG002604	MsaG006351	0.813577	4.112763e-51	7.671089e-49
MsaG002647	MsaG006351	0.816695	8.412182e-52	1.697749e-49
MsaG003192	MsaG006351	0.838987	3.820997e-57	1.445124e-54
MsaG003384	MsaG006351	0.835105	3.711320e-56	1.247057e-53
MsaG003427	MsaG006351	0.814627	2.418203e-51	4.630723e-49
MsaG003444	MsaG006351	0.856511	5.946149e-62	4.058829e-59
MsaG003503	MsaG006351	0.834154	6.417120e-56	2.095739e-53
MsaG003536	MsaG006351	0.844078	1.765975e-58	7.850263e-56
MsaG003632	MsaG006351	0.829903	7.127702e-55	2.057084e-52
MsaG003667	MsaG006351	0.800171	2.729486e-48	3.704601e-46
MsaG003712	MsaG006351	0.815070	1.930587e-51	3.738586e-49
MsaG003715	MsaG006351	0.810827	1.626973e-50	2.834961e-48
MsaG003795	MsaG006351	0.885731	1.363778e-71	3.237446e-68
MsaG003894	MsaG006351	0.807123	1.000537e-49	1.594463e-47
MsaG003966	MsaG006351	0.841633	7.837342e-58	3.221168e-55
MsaG004153	MsaG006351	0.810259	2.155056e-50	3.703514e-48
MsaG004324	MsaG006351	0.814327	2.815657e-51	5.351362e-49
MsaG004441	MsaG006351	0.800103	2.816992e-48	3.817601e-46
MsaG004595	MsaG006351	0.825301	8.965783e-54	2.274077e-51
MsaG004556	MsaG006351	0.852444	8.817081e-61	5.202088e-58
MsaG004656	MsaG006351	0.834529	5.174472e-56	1.709012e-53
MsaG004681	MsaG006351	0.818729	2.939572e-52	6.252360e-50
MsaG004711	MsaG006351	0.800434	2.414178e-48	3.296308e-46
MsaG004866	MsaG006351	0.833307	1.042305e-55	3.320099e-53
MsaG004835	MsaG006351	0.819192	2.309647e-52	4.972849e-50
MsaG005006	MsaG006351	0.801953	1.184495e-48	1.673854e-46
MsaG005092	MsaG006351	0.828915	1.235012e-54	3.465070e-52
MsaG005156	MsaG006351	0.828365	1.675373e-54	4.628861e-52
MsaG005248	MsaG006351	0.813928	3.444574e-51	6.481788e-49
MsaG005259	MsaG006351	0.827229	3.131878e-54	8.381153e-52
MsaG005510	MsaG006351	0.815111	1.890848e-51	3.665332e-49
MsaG005601	MsaG006351	0.820093	1.441223e-52	3.177692e-50
MsaG005641	MsaG006351	0.825029	1.038661e-53	2.614905e-51
MsaG005661	MsaG006351	0.800464	2.381288e-48	3.253551e-46
MsaG005880	MsaG006351	0.868125	1.663779e-65	1.783887e-62
MsaG006122	MsaG006351	0.843286	2.869723e-58	1.243571e-55
MsaG006170	MsaG006351	0.860170	4.894011e-63	3.830209e-60
MsaG006221	MsaG006351	0.831385	3.103227e-55	9.345342e-53
MsaG006240	MsaG006351	0.826539	4.569521e-54	1.199544e-51
MsaG006335	MsaG006351	0.815896	1.267386e-51	2.506165e-49
MsaG006351	MsaG006422	0.974030	8.486977e-137	1.263235e-130
MsaG006351	MsaG006452	0.840512	1.538333e-57	6.102584e-55
MsaG006351	MsaG006610	0.839612	2.635445e-57	1.016302e-54
MsaG006351	MsaG006623	0.855156	1.473842e-61	9.574927e-59
MsaG006351	MsaG006655	0.814034	3.264856e-51	6.159639e-49
MsaG006351	MsaG006683	0.825252	9.208616e-54	2.332446e-51
MsaG006351	MsaG006717	0.870222	3.493954e-66	4.086810e-63
MsaG006351	MsaG006729	0.864899	1.741674e-64	1.638831e-61
MsaG006351	MsaG006742	0.839637	2.595621e-57	1.001765e-54
MsaG006351	MsaG006751	0.809018	3.970818e-50	6.622259e-48
MsaG006351	MsaG006833	0.803362	6.083670e-49	8.879712e-47
MsaG006351	MsaG006798	0.839504	2.809410e-57	1.079759e-54
MsaG006351	MsaG006855	0.829103	1.112735e-54	3.138644e-52
MsaG006351	MsaG007000	0.801690	1.340497e-48	1.883012e-46
MsaG006351	MsaG007092	0.806468	1.374455e-49	2.156835e-47
MsaG006351	MsaG007131	0.812730	6.296528e-51	1.149795e-48
MsaG006351	MsaG007182	0.849797	4.882657e-60	2.627936e-57
MsaG006351	MsaG007431	0.811371	1.241610e-50	2.192496e-48
MsaG006351	MsaG007551	0.806748	1.200486e-49	1.896247e-47
MsaG006351	MsaG007828	0.819051	2.485873e-52	5.332433e-50
MsaG006351	MsaG008238	0.857184	3.775022e-62	2.640664e-59
MsaG006351	MsaG008464	0.828227	1.808109e-54	4.976050e-52
MsaG006351	MsaG009007	0.807095	1.014439e-49	1.615498e-47
MsaG006351	MsaG010112	0.813813	3.650505e-51	6.849529e-49
MsaG006351	MsaG010278	0.804314	3.867375e-49	5.770663e-47
MsaG006351	MsaG010545	0.834294	5.923709e-56	1.942768e-53
MsaG006351	MsaG011087	0.801986	1.165993e-48	1.648955e-46
MsaG006351	MsaG011383	0.823131	2.883775e-53	6.894564e-51
MsaG006351	MsaG012160	0.802243	1.033087e-48	1.469557e-46
MsaG006351	MsaG012234	0.835409	3.112678e-56	1.055458e-53
MsaG006351	MsaG012303	0.801166	1.714179e-48	2.379469e-46
MsaG006351	MsaG012308	0.808687	4.669925e-50	7.726636e-48
MsaG006351	MsaG012467	0.828339	1.699205e-54	4.691231e-52
MsaG006351	MsaG012586	0.814209	2.988267e-51	5.662793e-49
MsaG006351	MsaG012633	0.813646	3.972162e-51	7.421580e-49
MsaG006351	MsaG013779	0.800254	2.625843e-48	3.570669e-46
MsaG006351	MsaG013876	0.831307	3.242588e-55	9.742498e-53
MsaG006351	MsaG014671	0.837971	6.965997e-57	2.552603e-54
MsaG006351	MsaG015184	0.857110	3.969036e-62	2.768953e-59
MsaG006351	MsaG015192	0.805465	2.228522e-49	3.415190e-47
MsaG006351	MsaG015851	0.816258	1.052598e-51	2.100759e-49
MsaG006351	MsaG015871	0.829133	1.094718e-54	3.090350e-52
MsaG006351	MsaG016291	0.801658	1.360775e-48	1.910104e-46
MsaG006351	MsaG016347	0.821962	5.375342e-53	1.245301e-50
MsaG006351	MsaG016421	0.800181	2.717329e-48	3.688915e-46
MsaG006351	MsaG016471	0.800249	2.632414e-48	3.579139e-46
MsaG006351	MsaG016550	0.819900	1.594618e-52	3.497800e-50
MsaG006351	MsaG016946	0.818514	3.286552e-52	6.951523e-50
MsaG006351	MsaG016980	0.807708	7.530218e-50	1.216893e-47
MsaG006351	MsaG017109	0.816504	9.281958e-52	1.864115e-49
MsaG006351	MsaG017150	0.827979	2.073152e-54	5.665981e-52
MsaG006351	MsaG017317	0.822495	4.049493e-53	9.516650e-51
MsaG006351	MsaG017200	0.858344	1.716196e-62	1.253503e-59
MsaG006351	MsaG017359	0.838426	5.326205e-57	1.979338e-54
MsaG006351	MsaG017690	0.821474	6.961897e-53	1.592058e-50
MsaG006351	MsaG017719	0.805685	2.004448e-49	3.087723e-47
MsaG006351	MsaG018078	0.852397	9.093392e-61	5.356538e-58
MsaG006351	MsaG018897	0.803794	4.954913e-49	7.304759e-47
MsaG006351	MsaG019526	0.800239	2.644681e-48	3.595026e-46
MsaG006351	MsaG019590	0.810566	1.851242e-50	3.205316e-48
MsaG006351	MsaG019615	0.830687	4.594444e-55	1.356003e-52
MsaG006351	MsaG019860	0.812946	5.649916e-51	1.037299e-48
MsaG006351	MsaG019910	0.817439	5.736375e-52	1.180138e-49
MsaG006351	MsaG019913	0.812418	7.361005e-51	1.333804e-48
MsaG006351	MsaG020031	0.907187	1.582769e-80	1.248619e-76
MsaG006351	MsaG020150	0.802515	9.085628e-49	1.300549e-46
MsaG006351	MsaG020266	0.845976	5.454937e-59	2.581455e-56
MsaG006351	MsaG020353	0.829387	9.503992e-55	2.702584e-52
MsaG006351	MsaG020334	0.800376	2.481310e-48	3.383426e-46
MsaG006351	MsaG020371	0.836468	1.681963e-56	5.887682e-54
MsaG006351	MsaG020415	0.827480	2.729448e-54	7.355600e-52
MsaG006351	MsaG020467	0.801819	1.261565e-48	1.777377e-46
MsaG006351	MsaG020474	0.801619	1.386164e-48	1.944020e-46
MsaG006351	MsaG020574	0.866051	7.580381e-65	7.469138e-62
MsaG006351	MsaG020747	0.815890	1.270701e-51	2.512387e-49
MsaG006351	MsaG021049	0.809548	3.060142e-50	5.169177e-48
MsaG006351	MsaG021105	0.815332	1.689606e-51	3.293708e-49
MsaG006351	MsaG021283	0.815358	1.667751e-51	3.253228e-49
MsaG006351	MsaG022547	0.803266	6.366679e-49	9.272169e-47
MsaG006351	MsaG022933	0.821355	7.413460e-53	1.689999e-50
MsaG006351	MsaG023275	0.847227	2.493926e-59	1.230607e-56
MsaG006351	MsaG023626	0.867609	2.432621e-65	2.553800e-62
MsaG006351	MsaG023938	0.806892	1.119421e-49	1.774153e-47
MsaG006351	MsaG024008	0.870290	3.320807e-66	3.895314e-63
MsaG006351	MsaG024037	0.802356	9.797184e-49	1.397313e-46
MsaG006351	MsaG024287	0.813563	4.142001e-51	7.722969e-49
MsaG006351	MsaG024453	0.878505	5.579731e-69	9.398842e-66
MsaG006351	MsaG025732	0.801111	1.758886e-48	2.438487e-46
MsaG006351	MsaG026022	0.824870	1.132362e-53	2.838315e-51
MsaG006351	MsaG026718	0.831474	2.950586e-55	8.908921e-53
MsaG006351	MsaG026786	0.853711	3.839501e-61	2.368909e-58
MsaG006351	MsaG026841	0.830409	5.371043e-55	1.572711e-52
MsaG006351	MsaG026849	0.824423	1.441502e-53	3.569346e-51
MsaG006351	MsaG026987	0.813312	4.700138e-51	8.708336e-49
MsaG006351	MsaG027138	0.810046	2.393839e-50	4.092512e-48
MsaG006351	MsaG027590	0.817708	4.990795e-52	1.033847e-49
MsaG006351	MsaG027775	0.824536	1.355772e-53	3.367524e-51
MsaG006351	MsaG027763	0.805911	1.798390e-49	2.784958e-47
MsaG006351	MsaG027877	0.839421	2.951772e-57	1.131529e-54
MsaG006351	MsaG027992	0.838982	3.832600e-57	1.449290e-54
MsaG006351	MsaG028105	0.821435	7.109313e-53	1.624038e-50
MsaG006351	MsaG028109	0.809797	2.706809e-50	4.599923e-48
MsaG006351	MsaG028135	0.803191	6.598417e-49	9.593194e-47
MsaG006351	MsaG028189	0.876256	3.357222e-68	5.106354e-65
MsaG006351	MsaG028248	0.822851	3.348666e-53	7.945935e-51
MsaG006351	MsaG028516	0.810060	2.377291e-50	4.065633e-48
MsaG006351	MsaG028634	0.803422	5.912691e-49	8.641965e-47
MsaG006351	MsaG028658	0.846350	4.318958e-59	2.069502e-56
MsaG006351	MsaG029345	0.824829	1.157663e-53	2.898504e-51
MsaG006351	MsaG030039	0.827389	2.868949e-54	7.712265e-52
MsaG006351	MsaG030045	0.818756	2.898828e-52	6.170059e-50
MsaG006351	MsaG030356	0.838706	4.513679e-57	1.692138e-54
MsaG006351	MsaG031124	0.814710	2.318421e-51	4.448943e-49
MsaG006351	MsaG031248	0.836594	1.562304e-56	5.489447e-54
MsaG006351	MsaG031480	0.831803	2.451177e-55	7.473135e-53
MsaG006351	MsaG032272	0.811543	1.139470e-50	2.020664e-48
MsaG006351	MsaG032422	0.806188	1.573288e-49	2.452473e-47
MsaG006351	MsaG033309	0.821600	6.512896e-53	1.494396e-50
MsaG006351	MsaG033495	0.814440	2.658830e-51	5.067859e-49
MsaG006351	MsaG033995	0.841971	6.385888e-58	2.653224e-55
MsaG006351	MsaG034064	0.821132	8.343046e-53	1.890750e-50
MsaG006351	MsaG034208	0.802200	1.054466e-48	1.498494e-46
MsaG006351	MsaG034778	0.821249	7.840838e-53	1.782463e-50
MsaG006351	MsaG034794	0.806127	1.620527e-49	2.522401e-47
MsaG006351	MsaG035037	0.807422	8.654872e-50	1.389057e-47
MsaG006351	MsaG035530	0.821561	6.649030e-53	1.524048e-50
MsaG006351	MsaG035702	0.808993	4.018383e-50	6.697683e-48
MsaG006351	MsaG036046	0.817903	4.512166e-52	9.394327e-50
MsaG006351	MsaG037871	0.807619	7.865205e-50	1.268261e-47
MsaG006351	MsaG038030	0.829249	1.026217e-54	2.906433e-52
MsaG006351	MsaG039468	0.868637	1.139334e-65	1.247551e-62
MsaG006351	MsaG040095	0.875264	7.321516e-68	1.065186e-64
MsaG006351	MsaG040379	0.852572	8.111147e-61	4.806857e-58
MsaG006351	MsaG040733	0.835485	2.977492e-56	1.011963e-53
MsaG006351	MsaG041202	0.824267	1.567901e-53	3.865852e-51
MsaG006351	MsaG041237	0.830445	5.264462e-55	1.543022e-52
MsaG006351	MsaG042071	0.801851	1.242747e-48	1.752119e-46
MsaG006351	MsaG042717	0.808486	5.151529e-50	8.482074e-48
MsaG006351	MsaG043063	0.849923	4.502633e-60	2.433877e-57
MsaG006351	MsaG043350	0.851441	1.692953e-60	9.643038e-58
MsaG006351	MsaG043396	0.825498	8.056002e-54	2.054456e-51
MsaG006351	MsaG043803	0.811998	9.082472e-51	1.628722e-48
MsaG006351	MsaG044113	0.802319	9.969976e-49	1.420748e-46
MsaG006351	MsaG044303	0.853840	3.526335e-61	2.185745e-58
MsaG006351	MsaG044617	0.826155	5.636475e-54	1.463969e-51
MsaG006351	MsaG044808	0.801865	1.234556e-48	1.741133e-46
MsaG006351	MsaG044934	0.813353	4.603072e-51	8.537407e-49
MsaG006351	MsaG045200	0.844188	1.650609e-58	7.364246e-56
MsaG006351	MsaG045439	0.840207	1.847030e-57	7.257080e-55
MsaG006351	MsaG045497	0.814760	2.260516e-51	4.343376e-49
MsaG006351	MsaG045535	0.867100	3.531225e-65	3.631197e-62
MsaG006351	MsaG045769	0.813219	4.924528e-51	9.103289e-49
MsaG006351	MsaG045778	0.863588	4.445060e-64	3.970677e-61
MsaG006351	MsaG045952	0.804023	4.443695e-49	6.586134e-47
MsaG006351	MsaG046104	0.822085	5.036452e-53	1.170607e-50
MsaG006351	MsaG046180	0.812623	6.644599e-51	1.210116e-48
MsaG006351	MsaG046266	0.812095	8.652498e-51	1.555253e-48
MsaG006351	MsaG046540	0.801498	1.466805e-48	2.051469e-46
MsaG006351	MsaG046529	0.801620	1.385510e-48	1.943137e-46
MsaG006351	MsaG046436	0.838817	4.226049e-57	1.589901e-54
MsaG006351	MsaG046614	0.800890	1.950691e-48	2.690938e-46
MsaG006351	MsaG047011	0.822945	3.186014e-53	7.578952e-51
MsaG006351	MsaG047142	0.808365	5.466441e-50	8.974118e-48
MsaG006351	MsaG001564	0.827398	2.854888e-54	7.676274e-52
MsaG006351	MsaG001950	0.845602	6.885423e-59	3.218322e-56
MsaG006351	MsaG001346	0.830000	6.751432e-55	1.953954e-52
MsaG006351	MsaG002578	0.814669	2.367025e-51	4.537550e-49
MsaG006351	MsaG001555	0.831235	3.375963e-55	1.012210e-52
MsaG006351	MsaG001786	0.832334	1.814040e-55	5.616095e-53
MsaG006351	MsaG007986	0.826143	5.671908e-54	1.472699e-51
MsaG006351	MsaG008206	0.807426	8.638766e-50	1.386601e-47
MsaG006351	MsaG012667	0.808176	5.995325e-50	9.798023e-48
MsaG006351	MsaG012932	0.820667	1.066123e-52	2.386407e-50
MsaG006351	MsaG012729	0.834205	6.231504e-56	2.038244e-53
MsaG006351	MsaG013873	0.841534	8.317154e-58	3.407720e-55
MsaG006351	MsaG011821	0.820595	1.107036e-52	2.473347e-50
MsaG006351	MsaG023179	0.815539	1.520415e-51	2.979419e-49
MsaG006351	MsaG024799	0.855420	1.235538e-61	8.103988e-59
MsaG006351	MsaG026806	0.874001	1.958853e-67	2.696803e-64
MsaG006351	MsaG027101	0.807069	1.027090e-49	1.634654e-47
MsaG006351	MsaG026803	0.800245	2.636815e-48	3.584829e-46
MsaG006351	MsaG027608	0.802685	8.384554e-49	1.204853e-46
MsaG006351	MsaG028127	0.800291	2.580862e-48	3.512381e-46
MsaG006351	MsaG029490	0.820994	8.973267e-53	2.026198e-50
MsaG006351	MsaG028732	0.838369	5.510261e-57	2.044036e-54
MsaG006351	MsaG028944	0.849355	6.477217e-60	3.434304e-57
MsaG006351	MsaG033146	0.827417	2.824986e-54	7.599787e-52
MsaG006351	MsaG033462	0.813296	4.738218e-51	8.775278e-49
MsaG006351	MsaG033233	0.814401	2.711940e-51	5.163973e-49
MsaG006351	MsaG033077	0.854545	2.211778e-61	1.405895e-58
MsaG006351	MsaG030821	0.804046	4.395267e-49	6.517985e-47
MsaG006351	MsaG031291	0.821940	5.437660e-53	1.259005e-50
MsaG006351	MsaG033554	0.833011	1.234322e-55	3.897554e-53
MsaG006351	MsaG034891	0.805346	2.359400e-49	3.605899e-47
MsaG006351	MsaG035293	0.850427	3.259093e-60	1.792333e-57
MsaG006351	MsaG037484	0.816263	1.049845e-51	2.095542e-49
MsaG006351	MsaG036754	0.819384	2.088915e-52	4.520325e-50
MsaG006351	MsaG037155	0.850639	2.843162e-60	1.575277e-57
MsaG006351	MsaG036787	0.804451	3.623009e-49	5.423067e-47
MsaG006351	MsaG037051	0.812860	5.898015e-51	1.080530e-48
MsaG006351	MsaG035918	0.801507	1.460658e-48	2.043292e-46
MsaG006351	MsaG035497	0.804115	4.253087e-49	6.317070e-47
MsaG006351	MsaG036725	0.841936	6.522418e-58	2.706937e-55
MsaG006351	MsaG035299	0.811299	1.286587e-50	2.267957e-48
MsaG006351	MsaG040780	0.813295	4.741265e-51	8.780662e-49
MsaG006351	MsaG042416	0.892518	3.277322e-74	1.103571e-70
MsaG006351	MsaG043220	0.822961	3.157879e-53	7.515510e-51
MsaG006351	MsaG044531	0.824913	1.106078e-53	2.775820e-51
MsaG006351	MsaG043822	0.813693	3.878576e-51	7.255327e-49
MsaG006351	MsaG041443	0.812328	7.702868e-51	1.392597e-48
MsaG006351	MsaG043047	0.801602	1.397205e-48	1.958749e-46

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006351	MtrunA17_Chr2g0280161	95.467	353	16	0	1	353	1	353	0.0	700
MsaG006351	MtrunA17_Chr4g0049331	55.587	349	111	10	7	353	4	310	2.76e-115	337
MsaG006351	MtrunA17_Chr4g0054561	40.230	348	172	14	5	345	2	320	2.27e-59	194
MsaG006351	MtrunA17_Chr4g0054551	40.230	348	172	14	5	345	2	320	2.45e-58	191
MsaG006351	MtrunA17_Chr5g0400661	44.358	257	115	6	106	346	86	330	2.17e-57	189
MsaG006351	MtrunA17_Chr5g0400621	52.632	190	87	2	166	353	144	332	5.00e-55	183
MsaG006351	MtrunA17_Chr4g0054581	44.643	224	107	5	138	353	163	377	2.53e-49	169
MsaG006351	MtrunA17_Chr5g0400671	34.104	346	200	10	5	348	2	321	4.37e-49	167
MsaG006351	MtrunA17_Chr6g0468491	46.667	195	99	4	161	353	121	312	2.17e-48	165
MsaG006351	MtrunA17_Chr8g0336681	42.081	221	116	4	134	346	115	331	2.42e-48	166
MsaG006351	MtrunA17_Chr4g0054571	54.749	179	69	4	177	346	150	325	4.19e-48	165
MsaG006351	MtrunA17_Chr2g0333621	50.847	177	81	2	173	346	134	307	2.13e-46	160
MsaG006351	MtrunA17_Chr2g0307131	43.842	203	107	3	151	353	159	354	4.35e-46	160
MsaG006351	MtrunA17_Chr2g0307141	46.524	187	83	4	175	353	181	358	9.00e-45	157
MsaG006351	MtrunA17_Chr7g0225901	45.304	181	95	2	151	331	65	241	3.30e-43	150
MsaG006351	MtrunA17_Chr4g0033391	43.548	186	99	2	168	353	140	319	4.78e-43	152
MsaG006351	MtrunA17_Chr4g0054621	39.904	208	107	3	156	353	141	340	1.25e-41	148
MsaG006351	MtrunA17_Chr4g0002801	45.161	186	93	3	168	346	143	326	1.36e-39	142
MsaG006351	MtrunA17_Chr4g0002781	46.067	178	90	2	173	346	170	345	1.45e-39	143
MsaG006351	MtrunA17_Chr2g0333641	46.927	179	92	2	173	351	133	308	1.64e-39	142
MsaG006351	MtrunA17_Chr4g0033291	41.627	209	111	3	151	352	122	326	4.92e-39	141
MsaG006351	MtrunA17_Chr2g0333611	42.697	178	89	5	174	346	42	211	6.91e-39	137
MsaG006351	MtrunA17_Chr5g0400641	46.452	155	82	1	180	334	1	154	1.48e-38	135
MsaG006351	MtrunA17_Chr4g0033281	40.952	210	112	3	151	353	120	324	1.23e-37	137
MsaG006351	MtrunA17_Chr2g0333541	43.094	181	100	2	168	346	85	264	5.96e-36	132
MsaG006351	MtrunA17_Chr6g0468461	41.765	170	84	2	161	330	157	311	8.73e-33	125
MsaG006351	MtrunA17_Chr7g0249811	41.860	172	90	1	175	346	163	324	4.16e-31	120
MsaG006351	MtrunA17_Chr7g0233441	38.816	152	82	2	200	351	57	197	1.06e-25	102
MsaG006351	MtrunA17_Chr4g0002831	35.260	173	99	4	180	351	45	205	3.20e-24	98.6
MsaG006351	MtrunA17_Chr4g0002851	37.500	152	76	2	200	351	65	197	1.62e-23	96.3
MsaG006351	MtrunA17_Chr1g0185621	34.395	157	93	3	177	324	475	630	5.75e-20	91.3
MsaG006351	MtrunA17_Chr7g0275821	31.618	136	84	2	177	312	252	378	2.56e-16	79.7
MsaG006351	MtrunA17_Chr8g0366751	33.143	175	106	3	150	313	434	608	1.16e-15	78.2
MsaG006351	MtrunA17_Chr5g0411341	31.333	150	87	3	177	313	493	639	3.78e-15	76.6
MsaG006351	MtrunA17_Chr8g0346161	32.168	143	85	3	177	313	291	427	8.60e-15	75.1
MsaG006351	MtrunA17_Chr3g0131691	28.846	156	102	2	178	324	299	454	1.00e-14	75.1
MsaG006351	MtrunA17_Chr7g0260841	54.386	57	26	0	177	233	355	411	6.43e-14	72.8
MsaG006351	MtrunA17_Chr8g0346151	27.711	166	99	3	177	330	279	435	1.31e-13	71.6
MsaG006351	MtrunA17_Chr7g0252041	28.302	159	99	3	179	324	288	444	2.36e-13	70.9
MsaG006351	MtrunA17_Chr8g0365711	25.843	178	110	5	166	327	227	398	1.04e-11	65.9
MsaG006351	MtrunA17_Chr1g0211081	38.710	93	53	2	168	257	309	400	4.86e-11	63.9
MsaG006351	MtrunA17_Chr8g0386921	25.962	208	121	5	174	352	403	606	5.00e-11	63.9
MsaG006351	MtrunA17_Chr2g0298751	49.091	55	28	0	178	232	53	107	9.78e-11	61.2

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006351	AT4G37850.2	56.757	185	72	4	173	353	148	328	1.01e-59	196
MsaG006351	AT4G37850.1	56.757	185	72	4	173	353	148	328	1.01e-59	196
MsaG006351	AT2G22760.1	49.153	177	87	3	175	348	117	293	1.14e-48	166
MsaG006351	AT2G22770.1	46.809	188	86	2	177	350	132	319	6.35e-45	157
MsaG006351	AT2G22750.2	50.811	185	84	3	173	352	122	304	3.16e-43	152
MsaG006351	AT2G22750.3	50.811	185	84	3	173	352	150	332	5.94e-43	152
MsaG006351	AT2G22750.5	50.811	185	84	3	173	352	146	328	6.40e-43	152
MsaG006351	AT2G22750.1	50.811	185	83	4	173	352	122	303	6.42e-42	148
MsaG006351	AT2G22760.2	47.468	158	81	2	175	330	117	274	1.26e-41	147
MsaG006351	AT2G22750.4	50.811	185	83	4	173	352	150	331	1.36e-41	148
MsaG006351	AT1G32640.1	36.025	161	87	4	165	313	432	588	1.21e-18	87.8
MsaG006351	AT5G46760.1	34.783	161	101	2	177	334	415	574	3.47e-17	83.2
MsaG006351	AT2G46510.1	59.649	57	23	0	177	233	395	451	1.13e-16	81.6
MsaG006351	AT4G16430.1	37.143	140	70	5	118	241	247	384	3.08e-16	80.1
MsaG006351	AT1G01260.1	52.174	69	32	1	168	235	423	491	8.13e-16	79.0
MsaG006351	AT1G01260.2	52.174	69	32	1	168	235	423	491	8.13e-16	79.0
MsaG006351	AT1G01260.3	52.174	69	32	1	168	235	423	491	8.13e-16	79.0
MsaG006351	AT4G17880.1	31.013	158	107	2	177	334	416	571	1.30e-15	78.6
MsaG006351	AT1G12860.2	30.921	152	100	3	178	324	268	419	2.11e-14	74.3
MsaG006351	AT1G12860.1	31.126	151	99	3	179	324	269	419	2.66e-14	74.3
MsaG006351	AT3G26744.6	30.128	156	100	3	178	324	308	463	2.75e-13	71.2
MsaG006351	AT3G26744.1	30.128	156	100	3	178	324	308	463	3.06e-13	70.9
MsaG006351	AT3G26744.4	30.128	156	100	3	178	324	308	463	3.06e-13	70.9
MsaG006351	AT3G26744.2	30.128	156	100	3	178	324	308	463	3.06e-13	70.9
MsaG006351	AT5G57150.3	30.000	170	97	5	173	327	51	213	1.07e-12	67.0
MsaG006351	AT5G57150.5	30.000	170	97	5	173	327	50	212	1.19e-12	67.0
MsaG006351	AT5G57150.2	30.000	170	97	5	173	327	51	213	1.32e-12	67.0
MsaG006351	AT4G09820.1	31.343	134	65	3	178	308	364	473	1.44e-12	68.9
MsaG006351	AT5G57150.4	30.000	170	97	5	173	327	51	213	1.63e-12	67.4
MsaG006351	AT2G16910.1	27.879	165	90	4	178	317	315	475	1.90e-12	68.9
MsaG006351	AT5G41315.3	28.824	170	99	3	160	307	429	598	2.05e-12	68.6
MsaG006351	AT5G41315.1	28.824	170	99	3	160	307	424	593	2.09e-12	68.6
MsaG006351	AT5G41315.2	28.824	170	99	3	160	307	432	601	2.11e-12	68.6
MsaG006351	AT5G57150.1	30.000	170	97	5	173	327	50	212	2.32e-12	66.6
MsaG006351	AT3G61950.6	30.496	141	87	3	177	311	128	263	4.55e-12	66.2
MsaG006351	AT4G00870.1	46.875	64	34	0	178	241	250	313	6.14e-12	67.0
MsaG006351	AT3G61950.3	30.496	141	87	3	177	311	179	314	8.56e-12	65.9
MsaG006351	AT3G61950.2	30.496	141	87	3	177	311	128	263	9.00e-12	65.5
MsaG006351	AT3G61950.1	30.496	141	87	3	177	311	179	314	1.66e-11	65.1
MsaG006351	AT1G63650.3	27.564	156	96	3	169	307	397	552	1.86e-11	65.9
MsaG006351	AT1G63650.1	27.564	156	96	3	169	307	397	552	1.86e-11	65.9
MsaG006351	AT1G63650.2	27.564	156	96	3	169	307	397	552	1.86e-11	65.9
MsaG006351	AT4G29930.6	27.778	180	107	6	178	349	55	219	1.97e-11	63.5
MsaG006351	AT4G29930.2	28.161	174	111	4	178	349	55	216	3.16e-11	62.8
MsaG006351	AT4G29930.1	25.773	194	119	3	178	349	55	245	5.51e-11	62.8

Find 53 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CAAAATCTTGCTTCAATTTC+AGG	0.082646	2:-4553076	None:intergenic
AATAAATATCTTACCATTTC+AGG	0.175967	2:-4551561	None:intergenic
AACTTAACTGCTTCTGCTTT+TGG	0.208058	2:+4551868	MsaT006351.1:CDS
AGCAGAAGCAGTTAAGTTAT+TGG	0.221213	2:-4551863	None:intergenic
ATGGACAAAGCTTCTGTTCT+TGG	0.230457	2:+4552881	MsaT006351.1:CDS
AATAGCAGTTCCTTGACTTT+TGG	0.241912	2:+4553196	MsaT006351.1:CDS
TTTCACCGGTCTTTCGTTTC+CGG	0.252447	2:-4551965	None:intergenic
GTTGTTGAAGTTTGGATTAT+TGG	0.283921	2:-4551917	None:intergenic
ATCACTCAAGGTAACTTGTT+TGG	0.298879	2:+4552180	MsaT006351.1:CDS
TTTGATACCTTCTTTAGGTT+TGG	0.325711	2:-4552354	None:intergenic
CATTATTTGATACCTTCTTT+AGG	0.327577	2:-4552359	None:intergenic
ATGAACTCTGCAGGGGATAA+TGG	0.331301	2:+4551789	MsaT006351.1:intron
TCACTCAAGGTAACTTGTTT+GGG	0.334384	2:+4552181	MsaT006351.1:CDS
CTGTTCTTGGAGAAGCTATA+AGG	0.338206	2:+4552894	MsaT006351.1:CDS
TATCAGAGGGTTACCTGAAA+TGG	0.381568	2:+4551548	MsaT006351.1:CDS
TTTCAGGATGAGTTCTCATA+TGG	0.392590	2:+4551515	None:intergenic
GAAAATTACCTGAGCAATGA+TGG	0.451657	2:-4553239	None:intergenic
TTGAATTACACAAATCAGTT+GGG	0.457187	2:+4552087	MsaT006351.1:CDS
TCAAACAATGTAGTCTTATG+AGG	0.459967	2:-4553111	None:intergenic
TATAAGGTACTTAAAGCAAA+TGG	0.467859	2:+4552910	MsaT006351.1:CDS
GAGCAATGATGGTTATATCA+AGG	0.480152	2:-4553228	None:intergenic
TTTGAATTACACAAATCAGT+TGG	0.490344	2:+4552086	MsaT006351.1:CDS
TATTGGTATCAATAGAGCTT+AGG	0.492237	2:-4551846	None:intergenic
TTATTTCTTAACTGTTTCAC+CGG	0.499185	2:-4551979	None:intergenic
AACAGTTAAGAAATAACAGC+TGG	0.500916	2:+4551986	MsaT006351.1:CDS
TGATATAACCATCATTGCTC+AGG	0.502657	2:+4553231	MsaT006351.1:CDS
GGACACACCATCTCAGACTT+AGG	0.503073	2:-4552120	None:intergenic
AGAGAAAGTGAGTGTTCTTG+AGG	0.506732	2:+4552934	MsaT006351.1:CDS
CTTGAACAGCTTTAAAGACA+TGG	0.514024	2:-4552212	None:intergenic
TCATATTGTGTATCTGATGT+TGG	0.522543	2:-4552027	None:intergenic
AGCTTAGGTGATTATTGAAG+TGG	0.522860	2:-4551831	None:intergenic
GGTCTTTCGTTTCCGGTAGA+CGG	0.530949	2:-4551958	None:intergenic
TGGCAATTTGCAGATGGATG+TGG	0.531836	2:+4553620	MsaT006351.1:intron
TGCATGGAGACTCCGTCTAC+CGG	0.552215	2:+4551946	MsaT006351.1:CDS
TCTTGTTCCAAACCTAAAGA+AGG	0.556354	2:+4552347	MsaT006351.1:CDS
CTACATTGTTTGAAGAGTCA+AGG	0.557167	2:+4553121	MsaT006351.1:CDS
TGTCTTTAAAGCTGTTCAAG+AGG	0.569037	2:+4552215	MsaT006351.1:CDS
TGTGTAATTCAAATCAGCAA+AGG	0.572771	2:-4552076	None:intergenic
GCAAACATGTTGATCACTCA+AGG	0.574022	2:+4552168	MsaT006351.1:CDS
AGCAATGATGGTTATATCAA+GGG	0.578216	2:-4553227	None:intergenic
CTTCAACAACAAAACATGCA+TGG	0.578541	2:+4551930	MsaT006351.1:CDS
CAGACAGAGCGATGAATCGT+TGG	0.578725	2:-4552323	None:intergenic
TGGAGATTTCATCTATCAGA+GGG	0.587975	2:+4551535	MsaT006351.1:CDS
GAAAGTGAGTGTTCTTGAGG+AGG	0.588414	2:+4552937	MsaT006351.1:CDS
ATTGAAGCCTAAGTCTGAGA+TGG	0.590244	2:+4552113	MsaT006351.1:CDS
ATGGAGATTTCATCTATCAG+AGG	0.606668	2:+4551534	MsaT006351.1:CDS
GGTGAAATTCCCAAAAGTCA+AGG	0.621239	2:-4553206	None:intergenic
TATTGTGTATCTGATGTTGG+AGG	0.636554	2:-4552024	None:intergenic
GTCTACCGGAAACGAAAGAC+CGG	0.653717	2:+4551960	MsaT006351.1:CDS
AACTCTGCAGGGGATAATGG+AGG	0.663168	2:+4551792	MsaT006351.1:intron
ATGATCACATCGTAGCGGAG+AGG	0.690331	2:+4552280	MsaT006351.1:CDS
TGACAGTGAAGGATCTTGTG+AGG	0.718300	2:+4553652	MsaT006351.1:CDS
AGCTCATGATCACATCGTAG+CGG	0.723921	2:+4552275	MsaT006351.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	4551522	4553707	4551522	ID=MsaG006351
Chr2	mRNA	4551522	4553707	4551522	ID=MsaT006351.1;Parent=MsaG006351
Chr2	exon	4551522	4551569	4551522	ID=MsaT006351.1.exon1;Parent=MsaT006351.1
Chr2	CDS	4551522	4551569	4551522	ID=cds.MsaT006351.1;Parent=MsaT006351.1
Chr2	exon	4551802	4552368	4551802	ID=MsaT006351.1.exon2;Parent=MsaT006351.1
Chr2	CDS	4551802	4552368	4551802	ID=cds.MsaT006351.1;Parent=MsaT006351.1
Chr2	exon	4552881	4553252	4552881	ID=MsaT006351.1.exon3;Parent=MsaT006351.1
Chr2	CDS	4552881	4553252	4552881	ID=cds.MsaT006351.1;Parent=MsaT006351.1
Chr2	exon	4553633	4553707	4553633	ID=MsaT006351.1.exon4;Parent=MsaT006351.1
Chr2	CDS	4553633	4553707	4553633	ID=cds.MsaT006351.1;Parent=MsaT006351.1

Gene Sequence

>MsaT006351.1

ATGAGTTCTCATATGGAGATTTCATCTATCAGAGGGTTACCTGAAATGGGGATAATGGAGGATCCTAATTTTTTACACCACTTCAATAATCACCTAAGCTCTATTGATACCAATAACTTAACTGCTTCTGCTTTTGGAGATGCTTTACAAAAACATATTTTGTCCAATAATCCAAACTTCAACAACAAAACATGCATGGAGACTCCGTCTACCGGAAACGAAAGACCGGTGAAACAGTTAAGAAATAACAGCTGGAATTACAACAATAGTCCTCCAACATCAGATACACAATATGATAATTGTTGCTCTAATAATCTTCTTTCCTTTGCTGATTTGAATTACACAAATCAGTTGGGACTATTGAAGCCTAAGTCTGAGATGGTGTGTCCGAAAATCGATAACACTAGTACTCTTGCAAACATGTTGATCACTCAAGGTAACTTGTTTGGGAATCAAAACCATGTCTTTAAAGCTGTTCAAGAGGCTAAAGATATTGAGAATCGTCCTAATAAAATCTCTCAAGCTCATGATCACATCGTAGCGGAGAGGAAGCGTCGCGAGAAGCTTAGCCAACGATTCATCGCTCTGTCTGCTCTTGTTCCAAACCTAAAGAAGATGGACAAAGCTTCTGTTCTTGGAGAAGCTATAAGGTACTTAAAGCAAATGGAAGAGAAAGTGAGTGTTCTTGAGGAGGAACAAAAAAGGAAGAAAACTGTGGAATCTGTTGTAATAGTGAAGAAATCTCAACTTTCTATTAATGATGCTGAAAACTCTTGTTCAGACACTGATAGTACATTTGATGAGACATTACCTGAAATTGAAGCAAGATTTTGTGAAAGAAGTGTCCTCATAAGACTACATTGTTTGAAGAGTCAAGGAGTTATTGAGAAAATTATGAGTGAAATTGAGAAACTTCATCTGAAAGTCATCAATAGCAGTTCCTTGACTTTTGGGAATTTCACCCTTGATATAACCATCATTGCTCAGATGGATGTGGAATTTTGCATGACAGTGAAGGATCTTGTGAGGAAGCTACGTTCAGCATATTCATCTTTCATGTGA

Protein sequence

>MsaT006351.1

MSSHMEISSIRGLPEMGIMEDPNFLHHFNNHLSSIDTNNLTASAFGDALQKHILSNNPNFNNKTCMETPSTGNERPVKQLRNNSWNYNNSPPTSDTQYDNCCSNNLLSFADLNYTNQLGLLKPKSEMVCPKIDNTSTLANMLITQGNLFGNQNHVFKAVQEAKDIENRPNKISQAHDHIVAERKRREKLSQRFIALSALVPNLKKMDKASVLGEAIRYLKQMEEKVSVLEEEQKRKKTVESVVIVKKSQLSINDAENSCSDTDSTFDETLPEIEARFCERSVLIRLHCLKSQGVIEKIMSEIEKLHLKVINSSSLTFGNFTLDITIIAQMDVEFCMTVKDLVRKLRSAYSSFM*