AlfalfaGEDB | MsaG006377

M. sativa ssp. caerulea / MsaG006377

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0016592 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141
PFAM: PF04504.17

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006377	XP_003593377.1	89.647	425	34	4	1	421	1	419	0.0	665

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006377	sp\|Q9SYA9\|STKLD_ARATH	32.333	433	208	16	9	419	3	372	4.66e-27	114

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006377	tr\|G7IK18\|G7IK18_MEDTR	89.647	425	34	4	1	421	1	419	0.0	665

TFs/TRs:

Gene ID	Type	Classification
MsaG006377	TF	GeBP

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006377	MsaG006461	0.914384	5.055412e-84	6.402620e-80
MsaG006377	MsaG030079	0.833807	7.832604e-56	2.531814e-53
MsaG006377	MsaG028592	0.811239	1.325575e-50	2.333269e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006377	MtrunA17_Chr2g0280431	89.647	425	34	4	1	421	1	419	0.0	665
MsaG006377	MtrunA17_Chr4g0061741	54.430	158	65	4	235	390	114	266	1.07e-39	143
MsaG006377	MtrunA17_Chr3g0113131	35.793	271	142	8	155	407	106	362	7.41e-33	127
MsaG006377	MtrunA17_Chr7g0273821	30.921	152	83	4	153	293	68	208	1.12e-12	69.3

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006377	AT1G61730.1	32.333	433	208	16	9	419	3	372	4.74e-28	114
MsaG006377	AT4G00390.1	31.034	406	212	14	16	409	6	355	3.94e-22	97.4
MsaG006377	AT1G11510.1	30.295	373	188	15	59	407	15	339	3.25e-20	91.7
MsaG006377	AT1G11510.2	29.477	363	175	13	59	407	15	310	6.41e-18	84.7
MsaG006377	AT4G25210.1	26.567	335	182	11	111	414	63	364	1.12e-16	81.6
MsaG006377	AT1G66420.1	36.090	133	69	4	161	289	53	173	2.51e-14	73.6
MsaG006377	AT2G01370.1	31.214	173	95	5	130	288	7	169	2.00e-13	70.5
MsaG006377	AT1G44810.1	26.923	286	126	9	8	289	3	209	2.17e-13	70.9
MsaG006377	AT4G01260.1	29.433	282	146	9	158	411	57	313	3.56e-12	67.4
MsaG006377	AT2G25650.1	35.714	140	72	6	208	336	67	199	1.91e-11	65.9
MsaG006377	AT5G14280.1	28.936	235	134	8	208	412	63	294	9.20e-11	63.2

Find 114 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTGGGCTTGGGCTTGGACT+TGG	0.123490	2:-4814741	None:intergenic
CTTGGGCTTGGACTTGGGTT+TGG	0.137721	2:-4814735	None:intergenic
GAAGCAAGTGGTTTAACTTT+AGG	0.199493	2:-4814697	None:intergenic
ATTGGGCTTGGGCTTGGGCT+TGG	0.201008	2:-4814747	None:intergenic
TTGGGCTTGGACTTGGGTTT+GGG	0.211588	2:-4814734	None:intergenic
GATTCAGATTCAGCGGGTTT+AGG	0.217235	2:-4814592	None:intergenic
AAGCAAGTGGTTTAACTTTA+GGG	0.240022	2:-4814696	None:intergenic
CAAGAAGAAATCAAGCAAAT+AGG	0.257807	2:+4815566	MsaT006377.1:CDS
GAGTTGATTGGGCTTGGGCT+TGG	0.262442	2:-4814753	None:intergenic
TTGGGCTTGGGCTTGGACTT+GGG	0.274782	2:-4814740	None:intergenic
GCACCGGAGTTGATTGGGCT+TGG	0.275880	2:-4814759	None:intergenic
AGTTGATTGGGCTTGGGCTT+GGG	0.282116	2:-4814752	None:intergenic
ATTCAGATTCAGCGGGTTTA+GGG	0.293343	2:-4814591	None:intergenic
TGAATCGCGCTGAGGTGGTT+AGG	0.312947	2:+4815514	MsaT006377.1:CDS
CACCGGAGTTGATTGGGCTT+GGG	0.331565	2:-4814758	None:intergenic
TTCTTCGTTGACTACTTTGT+CGG	0.338007	2:-4814422	None:intergenic
GTGGGTTCCGATTTCTGTTC+CGG	0.351302	2:-4814661	None:intergenic
TTGTGATTCTCAAAGGGCTT+GGG	0.351413	2:+4814965	MsaT006377.1:CDS
GGCACGCTTAGTTCCGGACT+TGG	0.351838	2:-4814785	None:intergenic
GTCAGATAGGGTTGAGTTGG+AGG	0.367989	2:+4815449	MsaT006377.1:CDS
TGCTCTCTTATCATGAGCTT+TGG	0.370081	2:-4815142	None:intergenic
GCAGACTAGATTGGCATTGC+AGG	0.370825	2:+4815539	MsaT006377.1:CDS
TCAGAATCCGGTTCTGAATC+TGG	0.376206	2:+4814619	MsaT006377.1:CDS
AAGAAGAAATCAAGCAAATA+GGG	0.379593	2:+4815567	MsaT006377.1:CDS
AGTGGTTTAACTTTAGGGTT+AGG	0.384389	2:-4814691	None:intergenic
TTCGGCGGCACGCTTAGTTC+CGG	0.394238	2:-4814791	None:intergenic
TGGTTGGCACCGGAGTTGAT+TGG	0.408980	2:-4814765	None:intergenic
TTCTGAACCGGAACAGAAAT+CGG	0.410111	2:+4814654	MsaT006377.1:CDS
GCGGGTTTAGGGGTAGAGAT+AGG	0.413172	2:-4814580	None:intergenic
CTTGTGATTCTCAAAGGGCT+TGG	0.413788	2:+4814964	MsaT006377.1:CDS
GGTTGGCACCGGAGTTGATT+GGG	0.414661	2:-4814764	None:intergenic
TCTCTTCAATTGCTGAGCAT+TGG	0.418880	2:-4815073	None:intergenic
GAATCGCGCTGAGGTGGTTA+GGG	0.419146	2:+4815515	MsaT006377.1:CDS
CTCGTCGGAGGAAGAGGCGG+TGG	0.434145	2:-4814371	None:intergenic
GGGGTAGAGATAGGAGTAGA+AGG	0.435130	2:-4814571	None:intergenic
TCTGAATCCGGCTCAGAATC+CGG	0.447335	2:+4814607	MsaT006377.1:CDS
ATCGTTTCCAGTGTTACTTT+CGG	0.449680	2:-4814809	None:intergenic
CGCTTAGTTCCGGACTTGGT+TGG	0.450754	2:-4814781	None:intergenic
TCGGAGGAAGAGGCGGTGGG+TGG	0.451878	2:-4814367	None:intergenic
TAAGAATGAAAGTGGAAAAG+TGG	0.453012	2:+4815311	MsaT006377.1:CDS
TTCGGTTCCAGATTCAGAAC+CGG	0.454128	2:-4814626	None:intergenic
AACCGAATCTGATTCTGAAC+CGG	0.455116	2:+4814642	MsaT006377.1:CDS
TCCATCTCCTTCTTCTTCTG+AGG	0.458431	2:-4814458	None:intergenic
GGAGAGGTGGAAGAAGTTGC+AGG	0.459564	2:+4815470	MsaT006377.1:CDS
GGTTTAACTTTAGGGTTAGG+AGG	0.459566	2:-4814688	None:intergenic
TTCCGGTTCAGAATCAGATT+CGG	0.461387	2:-4814644	None:intergenic
AAGGAAGCAGCTGCATTTCA+CGG	0.465241	2:+4815021	MsaT006377.1:CDS
AATCACAAAGAGTGCTAAGA+AGG	0.466107	2:+4815236	MsaT006377.1:CDS
TTGATCCTCGTCGGAGGAAG+AGG	0.466920	2:-4814377	None:intergenic
ACTCCGGTGCCAACCAAGTC+CGG	0.469333	2:+4814772	MsaT006377.1:CDS
ATAGTTACTAAGAATGAAAG+TGG	0.473928	2:+4815303	MsaT006377.1:CDS
GGAGTCAGATAGGGTTGAGT+TGG	0.474759	2:+4815446	MsaT006377.1:CDS
TGTGATTCTCAAAGGGCTTG+GGG	0.482044	2:+4814966	MsaT006377.1:CDS
GTTCCGGACTTGGTTGGCAC+CGG	0.486396	2:-4814775	None:intergenic
TTAACTTTAGGGTTAGGAGG+AGG	0.489961	2:-4814685	None:intergenic
GGGTATAGCTGTGCTGGATA+AGG	0.490129	2:+4815392	MsaT006377.1:CDS
GGGTTGAGTTGGAGGAGAGG+TGG	0.490174	2:+4815457	MsaT006377.1:CDS
GAGATAGGAGTAGAAGGAGG+AGG	0.494629	2:-4814565	None:intergenic
TTCAGAACCGGATTCTGAGC+CGG	0.501712	2:-4814614	None:intergenic
ACGAGCTTGTGATTCTCAAA+GGG	0.508640	2:+4814959	MsaT006377.1:CDS
TCTAAGGAAGCTGAAGAAAA+CGG	0.508657	2:+4815198	MsaT006377.1:CDS
AAGAAAACCACCGGTGGTGG+TGG	0.509946	2:+4814847	MsaT006377.1:CDS
AAATGGTGGTTCTGCTAGGA+AGG	0.513798	2:+4815272	MsaT006377.1:CDS
AAGAAGAAAACCACCGGTGG+TGG	0.515031	2:+4814844	MsaT006377.1:CDS
GAAGTTGCAGGCTGCCGAGA+TGG	0.515486	2:+4815482	MsaT006377.1:CDS
ATAGGGTTGAGTTGGAGGAG+AGG	0.516403	2:+4815454	MsaT006377.1:CDS
GGTTAGGGAGCAGACTAGAT+TGG	0.517395	2:+4815530	MsaT006377.1:CDS
AGATAGGAGTAGAAGGAGGA+GGG	0.520024	2:-4814564	None:intergenic
GAAGGAGATGGAGAAGAAGA+AGG	0.521213	2:+4814469	MsaT006377.1:CDS
GACGAGCTTGTGATTCTCAA+AGG	0.523580	2:+4814958	MsaT006377.1:CDS
AAACCCGCTGAATCTGAATC+CGG	0.523805	2:+4814595	MsaT006377.1:CDS
CGGAGGAAGAGGCGGTGGGT+GGG	0.524036	2:-4814366	None:intergenic
TCGTTGACTACTTTGTCGGC+TGG	0.525334	2:-4814418	None:intergenic
GTTAAATTTGATGAGGCTGC+GGG	0.528643	2:+4815372	MsaT006377.1:CDS
TGCTCAGCAATTGAAGAGAA+AGG	0.529680	2:+4815077	MsaT006377.1:CDS
GGCTGCGGGTATAGCTGTGC+TGG	0.534970	2:+4815386	MsaT006377.1:CDS
GGTTAAATTTGATGAGGCTG+CGG	0.538193	2:+4815371	MsaT006377.1:CDS
ATCATCAGAACCACCACCAC+CGG	0.552134	2:-4814857	None:intergenic
CAATTGAAGAGAAAGGTTCG+TGG	0.552666	2:+4815084	MsaT006377.1:CDS
TGATGAGAATGAGGCGGAGG+AGG	0.559810	2:+4814876	MsaT006377.1:CDS
GATTCATCCTCAGAAGAAGA+AGG	0.562296	2:+4814451	MsaT006377.1:CDS
AATGCAGCTGCTTCCTTCAG+CGG	0.564243	2:-4815015	None:intergenic
TTAGGGTTAGGAGGAGGAGT+GGG	0.566966	2:-4814679	None:intergenic
GAGCCGGATTCAGATTCAGC+GGG	0.569467	2:-4814598	None:intergenic
TGATGATGAGAATGAGGCGG+AGG	0.577141	2:+4814873	MsaT006377.1:CDS
TCCTCAGAAGAAGAAGGAGA+TGG	0.578512	2:+4814457	MsaT006377.1:CDS
AAAAGCGGTTTGGAATTGAT+GGG	0.579284	2:+4815423	MsaT006377.1:CDS
TTCATGGGCTTTGAAGCAAG+TGG	0.579960	2:-4814709	None:intergenic
GAGGAGGATGTGAAATTGAC+TGG	0.583042	2:+4814892	MsaT006377.1:CDS
TCGTCGGAGGAAGAGGCGGT+GGG	0.588753	2:-4814370	None:intergenic
TGAAGGTGGTTGATCCTCGT+CGG	0.589745	2:-4814386	None:intergenic
GAAAGTGGAAAAGTGGAAAG+TGG	0.593025	2:+4815318	MsaT006377.1:CDS
AGCCCAAGCCCAATCAACTC+CGG	0.593390	2:+4814756	MsaT006377.1:CDS
TTTAGGGTTAGGAGGAGGAG+TGG	0.598971	2:-4814680	None:intergenic
ATCCTCGTCGGAGGAAGAGG+CGG	0.601599	2:-4814374	None:intergenic
CGTGCCGCCGAAAGTAACAC+TGG	0.604597	2:+4814802	MsaT006377.1:CDS
CACCGCCTCTTCCTCCGACG+AGG	0.604984	2:+4814372	MsaT006377.1:CDS
GGAAAAGTGGAAAGTGGTGT+TGG	0.606211	2:+4815324	MsaT006377.1:CDS
AAAGCGGTTTGGAATTGATG+GGG	0.609458	2:+4815424	MsaT006377.1:CDS
GACTGGAAAGGATCCGCTGA+AGG	0.611489	2:+4815002	MsaT006377.1:CDS
GTGGGTCGTCGACGAGAGCG+AGG	0.630460	2:-4814348	None:intergenic
TGGTTCTGATGATGAGAATG+AGG	0.631876	2:+4814867	MsaT006377.1:CDS
CGTTCCAAGAAGAAAACCAC+CGG	0.642479	2:+4814838	MsaT006377.1:CDS
GTTTCCAGTGTTACTTTCGG+CGG	0.643844	2:-4814806	None:intergenic
TGAGCCGGATTCAGATTCAG+CGG	0.650032	2:-4814599	None:intergenic
TTCAGATTCAGCGGGTTTAG+GGG	0.652803	2:-4814590	None:intergenic
GTAGAGATAGGAGTAGAAGG+AGG	0.653610	2:-4814568	None:intergenic
CGAACTGGTTAAATTTGATG+AGG	0.653994	2:+4815365	MsaT006377.1:CDS
ATCAGAACCACCACCACCGG+TGG	0.666036	2:-4814854	None:intergenic
AGGTGGTTGATCCTCGTCGG+AGG	0.667833	2:-4814383	None:intergenic
AAGCGGTTTGGAATTGATGG+GGG	0.669970	2:+4815425	MsaT006377.1:CDS
GAAGAAATCGATGAAAGCTG+AGG	0.677405	2:+4815050	MsaT006377.1:CDS
TCCAAGAAGAAAACCACCGG+TGG	0.717568	2:+4814841	MsaT006377.1:CDS
TTCTGATGATGAGAATGAGG+CGG	0.722855	2:+4814870	MsaT006377.1:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	4814319	4815587	4814319	ID=MsaG006377
Chr2	mRNA	4814319	4815587	4814319	ID=MsaT006377.1;Parent=MsaG006377
Chr2	exon	4814319	4815587	4814319	ID=MsaT006377.1.exon1;Parent=MsaT006377.1
Chr2	CDS	4814319	4815587	4814319	ID=cds.MsaT006377.1;Parent=MsaT006377.1

Gene Sequence

>MsaT006377.1

ATGGCGCCAAAGCCAAAGCAAAAGAAACGCCTCGCTCTCGTCGACGACCCACCCACCGCCTCTTCCTCCGACGAGGATCAACCACCTTCAACCCAAAAACCAGCCGACAAAGTAGTCAACGAAGAACATGAAGATTCATCCTCAGAAGAAGAAGGAGATGGAGAAGAAGAAGGTTCTTCATCTGAAGAAGAAGATAATCAAACTCAACAAACTCCTTCGAAAGATTCAAAACCCGCTTCCAAAAACCCTCCTCCTTCTACTCCTATCTCTACCCCTAAACCCGCTGAATCTGAATCCGGCTCAGAATCCGGTTCTGAATCTGGAACCGAATCTGATTCTGAACCGGAACAGAAATCGGAACCCACTCCTCCTCCTAACCCTAAAGTTAAACCACTTGCTTCAAAGCCCATGAAAACCCAAACCCAAGTCCAAGCCCAAGCCCAAGCCCAATCAACTCCGGTGCCAACCAAGTCCGGAACTAAGCGTGCCGCCGAAAGTAACACTGGAAACGATTCAAAACGTTCCAAGAAGAAAACCACCGGTGGTGGTGGTTCTGATGATGAGAATGAGGCGGAGGAGGATGTGAAATTGACTGGTGAAGACTCGAAGAAGAACTTTCAGAGATTGTTTAGTGAAGAAGACGAGCTTGTGATTCTCAAAGGGCTTGGGGATTTTGTGGCGAAGACTGGAAAGGATCCGCTGAAGGAAGCAGCTGCATTTCACGGTTTCGTGAAGAAATCGATGAAAGCTGAGGCCAATGCTCAGCAATTGAAGAGAAAGGTTCGTGGTTTGAAGAAGAAGTTTGAAAGCAGTGACAATTTTACCAAAGCTCATGATAAGAGAGCATTTGATCTTTTCAAGGTTTGGAGCAAAAATGCTTCTAAGGAAGCTGAAGAAAACGGAAAATCTAACGAGAAAATCACAAAGAGTGCTAAGAAGGAAGCTCCTGTTAAAAATGGTGGTTCTGCTAGGAAGGAATTAGCTATAGTTACTAAGAATGAAAGTGGAAAAGTGGAAAGTGGTGTTGGCAAGAGTTTCATTTTGAGCGAACTGGTTAAATTTGATGAGGCTGCGGGTATAGCTGTGCTGGATAAGGATGCTACAAAAAGCGGTTTGGAATTGATGGGGGAGTCAGATAGGGTTGAGTTGGAGGAGAGGTGGAAGAAGTTGCAGGCTGCCGAGATGGAAGTGTTTTTGAATCGCGCTGAGGTGGTTAGGGAGCAGACTAGATTGGCATTGCAGGAACTCAAGAAGAAATCAAGCAAATAG

Protein sequence

>MsaT006377.1

MAPKPKQKKRLALVDDPPTASSSDEDQPPSTQKPADKVVNEEHEDSSSEEEGDGEEEGSSSEEEDNQTQQTPSKDSKPASKNPPPSTPISTPKPAESESGSESGSESGTESDSEPEQKSEPTPPPNPKVKPLASKPMKTQTQVQAQAQAQSTPVPTKSGTKRAAESNTGNDSKRSKKKTTGGGGSDDENEAEEDVKLTGEDSKKNFQRLFSEEDELVILKGLGDFVAKTGKDPLKEAAAFHGFVKKSMKAEANAQQLKRKVRGLKKKFESSDNFTKAHDKRAFDLFKVWSKNASKEAEENGKSNEKITKSAKKEAPVKNGGSARKELAIVTKNESGKVESGVGKSFILSELVKFDEAAGIAVLDKDATKSGLELMGESDRVELEERWKKLQAAEMEVFLNRAEVVREQTRLALQELKKKSSK*