AlfalfaGEDB | MsaG006398

M. sativa ssp. caerulea / MsaG006398

KEGG: -
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006398	XP_024632494.1	95.747	823	35	0	1	823	1	823	0.0	1642

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006398	sp\|O81905\|SD18_ARATH	48.934	797	376	8	25	793	26	819	0.0	779

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006398	tr\|A0A396J198\|A0A396J198_MEDTR	95.747	823	35	0	1	823	1	823	0.0	1642

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG003288	MsaG006398	0.802506	9.127096e-49	1.306208e-46
MsaG006398	MsaG006453	0.937830	5.280315e-98	4.120060e-93

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG006398	MtrunA17_Chr2g0280681	95.747	823	35	0	1	823	1	823	1642
MsaG006398	MtrunA17_Chr4g0048631	48.075	857	399	14	4	823	5	852	777
MsaG006398	MtrunA17_Chr3g0093161	47.131	819	410	11	10	816	3	810	763
MsaG006398	MtrunA17_Chr8g0361251	48.655	818	392	13	5	807	6	810	756
MsaG006398	MtrunA17_Chr3g0078551	47.024	840	418	12	1	816	1	837	754
MsaG006398	MtrunA17_Chr2g0318811	47.266	823	416	10	8	823	4	815	752
MsaG006398	MtrunA17_Chr2g0280691	45.606	842	419	10	11	823	9	840	749
MsaG006398	MtrunA17_Chr2g0280711	48.054	822	387	15	31	816	30	847	746
MsaG006398	MtrunA17_Chr3g0078521	47.016	821	411	12	4	803	2	819	739
MsaG006398	MtrunA17_Chr2g0280701	45.400	826	430	11	6	823	4	816	737

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG006398	AT4G21380.1	48.934	797	376	8	25	793	26	819	779
MsaG006398	AT4G27290.2	46.144	817	418	9	1	802	1	810	773
MsaG006398	AT4G27290.1	45.859	809	386	10	1	802	1	764	755
MsaG006398	AT1G65800.1	47.636	825	393	11	30	823	31	847	738
MsaG006398	AT1G65790.1	46.089	831	405	11	25	823	24	843	730
MsaG006398	AT4G27300.1	46.173	810	401	13	29	823	26	815	709
MsaG006398	AT1G11340.1	43.985	823	424	15	29	823	20	833	683
MsaG006398	AT1G11410.1	43.217	833	429	14	27	823	21	845	665
MsaG006398	AT1G11410.4	43.217	833	429	14	27	823	28	852	664
MsaG006398	AT1G11410.3	43.521	818	418	14	42	823	12	821	658

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Find 142 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCTGAGGAAGTCCACG+TGG	0.713817	2:+4962852	None:intergenic
AAAAGGCTCTCAGAGAATTC+TGG	0.336086	2:-4961148	MsaT006398.1:CDS
AAAATGCTTGATTGGTCTAG+TGG	0.583365	2:-4962465	MsaT006398.1:CDS
AAACCACTTCTTAATCACAA+TGG	0.664935	2:-4963188	MsaT006398.1:CDS
AAACCTGGCCTTCTAGGTTT+TGG	0.226352	2:+4959911	None:intergenic
AAACTGAAGAAAAGACCAAA+AGG	0.472159	2:-4960671	MsaT006398.1:CDS
AAACTTGATATAAATGCTAG+TGG	0.617738	2:-4962279	MsaT006398.1:CDS
AAATACCATAACCATCGCAT+TGG	0.603112	2:+4962574	None:intergenic
AAATCTGATGTTTATAGCTT+TGG	0.329582	2:-4960499	MsaT006398.1:CDS
AACGTTGATGATCCTTCTTC+GGG	0.370146	2:-4962897	MsaT006398.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	4959805	4963462	4959805	ID=MsaG006398
Chr2	mRNA	4959805	4963462	4959805	ID=MsaT006398.1;Parent=MsaG006398
Chr2	exon	4959805	4960122	4959805	ID=MsaT006398.1.exon7;Parent=MsaT006398.1
Chr2	CDS	4959805	4960122	4959805	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4960417	4960567	4960417	ID=MsaT006398.1.exon6;Parent=MsaT006398.1
Chr2	CDS	4960417	4960567	4960417	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4960657	4960894	4960657	ID=MsaT006398.1.exon5;Parent=MsaT006398.1
Chr2	CDS	4960657	4960894	4960657	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4960993	4961203	4960993	ID=MsaT006398.1.exon4;Parent=MsaT006398.1
Chr2	CDS	4960993	4961203	4960993	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4961637	4961785	4961637	ID=MsaT006398.1.exon3;Parent=MsaT006398.1
Chr2	CDS	4961637	4961785	4961637	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4961911	4962033	4961911	ID=MsaT006398.1.exon2;Parent=MsaT006398.1
Chr2	CDS	4961911	4962033	4961911	ID=cds.MsaT006398.1;Parent=MsaT006398.1
Chr2	exon	4962181	4963462	4962181	ID=MsaT006398.1.exon1;Parent=MsaT006398.1
Chr2	CDS	4962181	4963462	4962181	ID=cds.MsaT006398.1;Parent=MsaT006398.1

Gene Sequence

>MsaT006398.1

ATGGAGAAAACAGAGTTCATCTTTCTACTTCTTGCTACTTGTTTCCATTTAACAACTATGTTTCTGATTCCTTCAAAAGCAGAAAATACCATAACTCCACCACAAATCATCACTGGTAACCAAACACTAATTTCACCTTCACAAAATTTTGAACTTGGTTTCTTCACACCTAAAAATTCCACTTACACATATCTTGGTATATGGTATAAGCAAATTCACATAAAGAATATTGTTTGGGTTGCAAATAGAGATAAACCACTTCTTAATCACAATGGTACATTAGCATTCAACAATGATGGAAAACTCATTATTCTTAACCACAAAGGAAATGTTTTCTGGGCCTCAAATTCATCTGGGCCTGCAAAGAATCCAGTAGCTCAGCTTCTAGACACTGGAAACTTTGTCTTGAAGAACTTTGAAGATGAAAACTCTGACGAAATTTTGTGGCAAAGTTTTGATTATCCTTCTAATACATTGTTACCAGGAATGAAACTTGGTTGGAACTTCAAAACTGGTTTGAACATTCATTTGAGTTCTTGGAAGAACGTTGATGATCCTTCTTCGGGTGAATATAGTTATAGTGTTGATCCACGTGGACTTCCTCAGCTTTTTCTTCAAAAAGGTAAGAAGAAAATTTTCCGAAGTGGACCATGGTATGTGGAACAATACAAAGGTGATCCAGCTCTAAGGGAAAATCCAATTTTCAAACCGATTTTTGTTTTTGATTCTGATGAAGTTTATTACTCTTTTGAGACTAAAGACGACATTGTTTCAAGATTTTTCCTTAGTGAATCTGGTTTAATTCAGCATTTCACATGGAATGATCATCGTTCGAATTGGTTTTCTGAGTTTAATGTTCAAGGCGACCAATGCGATGGTTATGGTATTTGTGGTGCTTATGGAACTTGTAACATAAAAAACTCTCCAATTTGCAAGTGTTTGAATGGTTTTGAGCCAAGGAATATGCATGATTGGAAAATGCTTGATTGGTCTAGTGGATGTGTTAGGGAAAATTCAAAAGTTTGTAGAAATGGTGATGTATTTAAGAAGTTTATAGGAATGAAACTACCAGATTCTGTAGACTTTCATGTAAATTACAGCATTAACATTGATCAATGTGAGGTAGAATGCTCTAAGAATTGTTCTTGTGTTGCTTATGCAAAACTTGATATAAATGCTAGTGGTAATGGTTGTATTGCTTGGTTTGGAGACTTATTTGATGTAAGGGAGGATTCTGTGAATGGACAAGATTTCTTTGTAAGAGTTTCAGCTTCAGAACTAGATTCAAATGTTGAGAGAAACAAAAGGAAGAAACTGATACTACTTTCTGTGAGTATATCAGTAGCCTCTACTATTATTACCTCAGCATTGTGGTTGATAATTAAGAAATGGAGAAGAAATAGAGCTAAAGAGACAGGTATTCAATTTAGTGTTGACACAAGCAAGAGTGAGTTTGAACTCCCATTTTTTGAGATTTCCATTATTGAAGCTGCAACAAGGAATTTCTCTTTTTATAATAAGATTGGAGAAGGTGGATTTGGTCCTGTATACAAAGGCCAGCTTCCATCAGGACGAGAAATAGCAGTGAAAAGGCTCTCAGAGAATTCTGGACAAGGCTTGCAAGAATTCAAGAATGAGGTCATATTCATATCTCAACTTCAACATCGAAATCTCGTCAAGCTTCTTGGTTGTTGCATTCAAGGAGAAGATAAAATGTTGGTCTATGAATACATGCCAAATAGAAGCTTGGACTCCTTATTATTTGATGAAACCAAGCGTTCCGCGCTTAATTGGCAAAAGAGGCTAGACATTATTAACGGCATTGCTAGGGGACTTGTCTATCTTCATAGAGATTCAAGACTAAGAATAATTCATAGAGATCTAAAAGCAAGCAATGTTCTTTTAGATGGCGAAATGAATCCAAAAATTTCTGACTTTGGAATGGCAAGAATGTTTGGTGGAGATCAAACTGAAGAAAAGACCAAAAGGGTAGTTGGAACATATGGATACATGTCTCCAGAGTACGCAATGGATGGACATTTCTCTTTTAAATCTGATGTTTATAGCTTTGGAGTTTTACTTTTAGAGCTGTTGAGTGGCAAGAAAAACAAAGGATTTTTTCACCCTGATCACAAGTTGAATCTCCTAGGCCATGCATGGAAGCTTTGGAATGAAGGTAAAGCCATTGAGTTGATGGATCCATTACTTGAGGATCAAGTGTCTACCCCTGAATCCATTTTAAAGTGTATTCAAGTAGGTCTTTTATGTGTTCAACAGCATCCAGAAGAAAGACCAACAATGTCATCAGTGGTATTAATGTTGGATGGTGAAAGTGTGTTGCTCCCAAAACCTAGAAGGCCAGGTTTGTATTCAGAGAGGTGTTTCTTAGAGACAGATTCATCATCACGTGGTATGCTCAATTCTGGTTCCAATGACATAACTGTTACCACTACTGTAGTAGAGGGTCGTTAA

Protein sequence

>MsaT006398.1

MEKTEFIFLLLATCFHLTTMFLIPSKAENTITPPQIITGNQTLISPSQNFELGFFTPKNSTYTYLGIWYKQIHIKNIVWVANRDKPLLNHNGTLAFNNDGKLIILNHKGNVFWASNSSGPAKNPVAQLLDTGNFVLKNFEDENSDEILWQSFDYPSNTLLPGMKLGWNFKTGLNIHLSSWKNVDDPSSGEYSYSVDPRGLPQLFLQKGKKKIFRSGPWYVEQYKGDPALRENPIFKPIFVFDSDEVYYSFETKDDIVSRFFLSESGLIQHFTWNDHRSNWFSEFNVQGDQCDGYGICGAYGTCNIKNSPICKCLNGFEPRNMHDWKMLDWSSGCVRENSKVCRNGDVFKKFIGMKLPDSVDFHVNYSINIDQCEVECSKNCSCVAYAKLDINASGNGCIAWFGDLFDVREDSVNGQDFFVRVSASELDSNVERNKRKKLILLSVSISVASTIITSALWLIIKKWRRNRAKETGIQFSVDTSKSEFELPFFEISIIEAATRNFSFYNKIGEGGFGPVYKGQLPSGREIAVKRLSENSGQGLQEFKNEVIFISQLQHRNLVKLLGCCIQGEDKMLVYEYMPNRSLDSLLFDETKRSALNWQKRLDIINGIARGLVYLHRDSRLRIIHRDLKASNVLLDGEMNPKISDFGMARMFGGDQTEEKTKRVVGTYGYMSPEYAMDGHFSFKSDVYSFGVLLLELLSGKKNKGFFHPDHKLNLLGHAWKLWNEGKAIELMDPLLEDQVSTPESILKCIQVGLLCVQQHPEERPTMSSVVLMLDGESVLLPKPRRPGLYSERCFLETDSSSRGMLNSGSNDITVTTTVVEGR*