AlfalfaGEDB | MsaG006402

M. sativa ssp. caerulea / MsaG006402

KEGG: K04733
GO: -
PFAM: PF01453.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006402	XP_039686256.1	79.281	835	151	9	10	831	1	826	0.0	1297
MsaG006402	XP_039686256.1	90.909	847	56	3	1	831	861	1702	0.0	1508

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006402	sp\|Q9SXB8\|Y1133_ARATH	48.727	825	381	15	33	831	34	842	0.0	776

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006402	tr\|G7IK58\|G7IK58_MEDTR	91.727	834	55	3	10	831	1	832	0.0	1500

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG006402	MtrunA17_Chr2g0280791	76.464	837	180	5	9	831	4	837	1314
MsaG006402	MtrunA17_Chr2g0280801	77.633	845	173	4	1	831	1	843	1311
MsaG006402	MtrunA17_Chr2g0280781	79.663	831	151	9	10	831	1	822	1301
MsaG006402	MtrunA17_Chr2g0280771	90.476	672	40	2	10	681	1	648	1214
MsaG006402	MtrunA17_Chr7g0236121	56.946	799	319	11	28	818	26	807	911
MsaG006402	MtrunA17_Chr7g0236691	54.958	837	352	14	2	831	1	819	899
MsaG006402	MtrunA17_Chr7g0236341	54.392	831	330	11	28	831	24	832	888
MsaG006402	MtrunA17_Chr7g0236651	54.897	827	333	14	9	831	6	796	881
MsaG006402	MtrunA17_Chr7g0236201	54.207	832	318	12	10	831	11	789	880
MsaG006402	MtrunA17_Chr7g0236551	53.865	828	347	13	10	831	9	807	876

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG006402	AT1G11330.1	48.846	823	381	15	33	831	34	840	776
MsaG006402	AT1G11330.2	48.727	825	381	15	33	831	34	842	776
MsaG006402	AT1G11300.1	49.195	807	373	16	40	831	36	820	756
MsaG006402	AT1G11300.2	48.628	802	370	13	40	831	36	805	749
MsaG006402	AT1G11350.1	48.364	825	388	17	30	831	21	830	732
MsaG006402	AT1G11303.1	47.460	807	387	17	40	831	36	820	726
MsaG006402	AT1G11330.3	49.654	723	324	14	33	731	34	740	689
MsaG006402	AT4G21390.1	43.902	861	423	20	12	831	8	849	669
MsaG006402	AT1G61610.1	43.208	854	433	16	11	831	8	842	662
MsaG006402	AT1G61370.1	41.388	836	450	17	11	831	4	814	645

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Find 148 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGAGGGCAATACAAGG+AGG	0.729048	2:-5021740	MsaT006402.1:CDS
AAAAGGATTTATCATTAGAA+GGG	0.518278	2:-5023962	MsaT006402.1:CDS
AAAATCTGATCCACATAATC+AGG	0.363660	2:+5021262	None:intergenic
AAAATGAATGCAGGTTGAGA+TGG	0.548940	2:+5021130	None:intergenic
AAACCACTACAAGATTCTTC+TGG	0.296739	2:-5024426	MsaT006402.1:CDS
AAACGTTTAACCATAATTGA+AGG	0.456742	2:-5021909	MsaT006402.1:CDS
AAAGAGTAAAAGCCACTTCA+TGG	0.402258	2:-5024155	MsaT006402.1:CDS
AAAGCCAAATAATATCTTGT+TGG	0.432287	2:-5021823	MsaT006402.1:CDS
AACAACGATGCATTCAAGCT+TGG	0.453056	2:-5024537	MsaT006402.1:CDS
AACACAACAAATCGCTACGT+AGG	0.708044	2:-5024498	MsaT006402.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	5021042	5024703	5021042	ID=MsaG006402
Chr2	mRNA	5021042	5024703	5021042	ID=MsaT006402.1;Parent=MsaG006402
Chr2	exon	5021042	5021344	5021042	ID=MsaT006402.1.exon7;Parent=MsaT006402.1
Chr2	CDS	5021042	5021344	5021042	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5021495	5021642	5021495	ID=MsaT006402.1.exon6;Parent=MsaT006402.1
Chr2	CDS	5021495	5021642	5021495	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5021726	5021963	5021726	ID=MsaT006402.1.exon5;Parent=MsaT006402.1
Chr2	CDS	5021726	5021963	5021726	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5022508	5022718	5022508	ID=MsaT006402.1.exon4;Parent=MsaT006402.1
Chr2	CDS	5022508	5022718	5022508	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5022797	5022960	5022797	ID=MsaT006402.1.exon3;Parent=MsaT006402.1
Chr2	CDS	5022797	5022960	5022797	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5023115	5023231	5023115	ID=MsaT006402.1.exon2;Parent=MsaT006402.1
Chr2	CDS	5023115	5023231	5023115	ID=cds.MsaT006402.1;Parent=MsaT006402.1
Chr2	exon	5023389	5024703	5023389	ID=MsaT006402.1.exon1;Parent=MsaT006402.1
Chr2	CDS	5023389	5024703	5023389	ID=cds.MsaT006402.1;Parent=MsaT006402.1

Gene Sequence

>MsaT006402.1

ATGTTGGGACATAGAGTACAAGGAAACATGTTATCTGTTTTACTAACACTCTCTATCATTTACATGATCAACAGTGGCACTAGTGCTTCTGTGAACACAATTACATCGCCTCAATTGATCAAAGAAAATGAAACAATAAGTTCTAACAACGATGCATTCAAGCTTGGATTCTTCAGCCCGGTGAACACAACAAATCGCTACGTAGGAATCTGGTATCTCAATCGATCCAACATCATATGGGTAGCCAATAGAGAAAAACCACTACAAGATTCTTCTGGGGTTATCACAATATCTCATGATTACACCAATCTTGTAGTACTGAATGGACAAAAGCATGTTATATGGTCATCAAATGTCTCAAGTAATTTGGCATCATCAAATTCTAATGTCACTGCTCAGCTACAAAATGATGGAAATCTTGTTTTGCTTGCAAACACTACAGGCAACATAATATGGGAGAGTGGCAAGCATCCATCAAATGCTTTCATTGCAAATATGATACTTTGCAGCAACCAAAAAACAGGTGAAAGAGTAAAAGCCACTTCATGGAAAACTCCTTCAGATCCAGCTTTTGGGAAATTCTCTGCTACCATTGAGCGTTTCAATGCTCCTGAAATTTTTGTATGGAACCAAACAAAACCGTATTGGCGCTCAGGACCATGGAATGGTCAAGATTTTCTTGGTTTGGAAAGTAATTTGTTGCCTACTTCTGCAAATCTAAAAGGATTTATCATTAGAAGGGAAGATAATGGAAGTCTTGTTGAGATTACATATACATTGCCAAATAGTTCCTTCTTTGCAACCATTGTATTGAGTTCTGAAGGCAAGCTTGTGTACACTGCCTGGATCAATATGATTCAAGTTCGGAAGCGGGCAGTTCAACAAAATGATTGTGATGTTTATGGTATTTGTGGTCCTAATGGAAGCTGTGATTTGAAAAATTCTCCAATATGTACTTGTTTGATAGGTTTTAAGCCAAGAAACGTGGGCGAATGGAATAGACAAAATTGGACTAGTGGGTGTGTGAGAAGGGCTACACTACAATGCGAGAGGGGGAAGTACAAAGGGAGTGCATTAGACGGTGAAGAAGACGGGTTTCTAAAACTAGAGACGACAAAACCACCAGATTTTGTAGAACAATCATATCCTTCTCTTGATGCTTGTCGAATTGAGTGCTTGAATAATTGTTCTTGTGTTGCTTATGCATATGATAATGGAATCCGGTGCTTAACTTGGAGTGATAAACTAATTGACATAGTCAGGTTTACAGGTGGAGGCATTGATCTTTACATACGCCAATCTTATTCAGAACTTAATGGCAGTCACGGGAAGAGAAATATTACATCAATCATCATAGCTATAGTAATAGTTGGAGTAATTATTGTTGCTACTTGTACTTATTTCTTTTGGTCATCAGCATCTAAACGCTCAGGACAAACTCATGAAGAGAACCAAAGTGCAAGTCGTATTGGAGATGTGGAACAGGTTAAAATAGAGGACCTTCCTTTATTTGACTTCAAAATTATTTCATCGGCAACAAATAACTTTGGTTCGACTAATAAGATTGGTCAGGGCGGTTTTGGTTCGGTGTACAAGGGAGAATTACCAGATGGATTAGAAGTAGCAGTGAAGAGACTTTCAAAGGCTTCGGCACAGGGGTTAGAAGAATTTATGAATGAAGTGATTGTTATTTCAAAGCTTCAACATCGCAATCTTGTAAGACTTCTAGGTTGCTGCATTGAAGGGGAAGAAAAGATGTTGATCTATGAGTACATGCCTAATAACAGTTTAGATTTTTATCTATTTGACCCAGTAAAAAAGAAGGTTTTAGATTGGCATAAACGTTTAACCATAATTGAAGGAATCTCTCGAGGTCTGCTTTATCTTCATAGAGATTCGAGATTAAGAATAATACATAGAGACCTAAAGCCAAATAATATCTTGTTGGATGGAGAATTGAATCCAAAAATATCTGATTTTGGTATGGCTAAAATATTTGGAGGGAGCGAAAACGAGGGCAATACAAGGAGGATTGTGGGAACATATGGTTATATGTCTCCTGAATACGCAATGGAGGGGTTATTTTCAGAGAAATCAGATGTTTTTAGCTTTGGGGTTTTGCTCCTGGAGATAATAAGTGGAAGGAAAAACACAAGTTTCTATAATCATCAAGCACTTACTCTCTTAGGATATGCATGGATACTATGGAATGAAGAGGAGATTATATCTTTGATAGATCCAGAAATATGTAAGCCTGATTATGTGGATCAGATTTTGAGAAGCATACATATTGGACTTCTTTGTGTGCAAGAAATTGCAAAGGAGAGACCTACCATGGCCACAGTTGTTTCAATGCTTAATAGTGAGATTGTTAAACTTCCTCCTCCATCTCAACCTGCATTCATTTTAAGACAGAAGGAGCATAGAGCAGACTCGACTCAACAAAATCACGACACGAATAACAGTGTCACTGTCACAAGCTTGCAAGGCAGATAA

Protein sequence

>MsaT006402.1

MLGHRVQGNMLSVLLTLSIIYMINSGTSASVNTITSPQLIKENETISSNNDAFKLGFFSPVNTTNRYVGIWYLNRSNIIWVANREKPLQDSSGVITISHDYTNLVVLNGQKHVIWSSNVSSNLASSNSNVTAQLQNDGNLVLLANTTGNIIWESGKHPSNAFIANMILCSNQKTGERVKATSWKTPSDPAFGKFSATIERFNAPEIFVWNQTKPYWRSGPWNGQDFLGLESNLLPTSANLKGFIIRREDNGSLVEITYTLPNSSFFATIVLSSEGKLVYTAWINMIQVRKRAVQQNDCDVYGICGPNGSCDLKNSPICTCLIGFKPRNVGEWNRQNWTSGCVRRATLQCERGKYKGSALDGEEDGFLKLETTKPPDFVEQSYPSLDACRIECLNNCSCVAYAYDNGIRCLTWSDKLIDIVRFTGGGIDLYIRQSYSELNGSHGKRNITSIIIAIVIVGVIIVATCTYFFWSSASKRSGQTHEENQSASRIGDVEQVKIEDLPLFDFKIISSATNNFGSTNKIGQGGFGSVYKGELPDGLEVAVKRLSKASAQGLEEFMNEVIVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNNSLDFYLFDPVKKKVLDWHKRLTIIEGISRGLLYLHRDSRLRIIHRDLKPNNILLDGELNPKISDFGMAKIFGGSENEGNTRRIVGTYGYMSPEYAMEGLFSEKSDVFSFGVLLLEIISGRKNTSFYNHQALTLLGYAWILWNEEEIISLIDPEICKPDYVDQILRSIHIGLLCVQEIAKERPTMATVVSMLNSEIVKLPPPSQPAFILRQKEHRADSTQQNHDTNNSVTVTSLQGR*