AlfalfaGEDB | MsaG006424

M. sativa ssp. caerulea / MsaG006424

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006424	KEH36501.1	94.938	731	33	2	40	767	22	751	0.0	1436

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006424	sp\|Q9SSE9\|JMJ25_ARATH	35.171	526	266	10	243	757	429	890	3.27e-87	300

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006424	tr\|A0A072V4C3\|A0A072V4C3_MEDTR	94.938	731	33	2	40	767	22	751	0.0	1436

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006424	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006424	MtrunA17_Chr2g0281051	95.382	693	28	2	78	767	272	963	0.0	1373
MsaG006424	MtrunA17_Chr4g0048531	63.978	558	171	7	231	761	725	1279	0.0	716
MsaG006424	MtrunA17_Chr4g0048531	52.941	170	78	2	81	250	333	500	6.17e-42	165
MsaG006424	MtrunA17_Chr7g0275771	35.685	737	402	17	81	761	207	927	2.71e-138	431
MsaG006424	MtrunA17_Chr1g0211711	34.985	666	373	13	95	750	425	1040	9.44e-115	372
MsaG006424	MtrunA17_Chr1g0183311	34.770	696	390	15	95	763	226	884	4.10e-114	366
MsaG006424	MtrunA17_Chr4g0075261	33.428	706	388	14	73	760	225	866	6.32e-113	363
MsaG006424	MtrunA17_Chr1g0192011	32.169	687	401	15	87	765	338	967	8.90e-110	357
MsaG006424	MtrunA17_Chr5g0420361	35.000	680	381	22	95	757	157	792	1.60e-97	320
MsaG006424	MtrunA17_Chr2g0289121	32.281	697	364	16	72	757	219	818	1.44e-89	299

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006424	AT4G21430.1	38.451	697	357	14	73	763	287	917	4.38e-142	441
MsaG006424	AT4G00990.1	35.624	713	383	15	89	760	154	831	3.69e-133	416
MsaG006424	AT1G62310.1	36.029	680	343	14	85	747	279	883	2.46e-119	380
MsaG006424	AT4G00990.3	34.969	652	348	15	89	699	154	770	5.71e-112	358
MsaG006424	AT4G00990.2	34.969	652	348	15	89	699	154	770	5.83e-112	358
MsaG006424	AT1G09060.2	31.433	684	400	18	87	765	278	897	3.29e-89	301
MsaG006424	AT1G09060.1	31.433	684	400	18	87	765	278	897	3.29e-89	301
MsaG006424	AT1G09060.4	31.433	684	400	18	87	765	292	911	4.97e-89	301
MsaG006424	AT1G09060.3	31.433	684	400	18	87	765	292	911	4.97e-89	301
MsaG006424	AT3G07610.1	35.171	526	266	10	243	757	429	890	3.32e-88	300

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Find 133 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGTTGGGATCCTC+TGG	0.488482	2:+5262183	MsaT006424.1:CDS
AAACTGTTCTTTGAATAGTT+GGG	0.497020	2:-5262662	None:intergenic
AAATGCTCTTGTCTTCTAAA+AGG	0.324737	2:-5261736	None:intergenic
AAATGTATTCTGTTGCTCAG+TGG	0.670307	2:+5263876	MsaT006424.1:CDS
AAATTCAGAAGACCGAACCT+CGG	0.675191	2:-5262739	None:intergenic
AACCACCTAGCTCTGAAGGA+GGG	0.641948	2:-5261835	None:intergenic
AACGAAGGAAGAATGTCCAC+CGG	0.642524	2:+5259582	None:intergenic
AACTGATACGTCAATGTTGC+TGG	0.394642	2:+5261772	MsaT006424.1:CDS
AAGATGCTCTGATCTAGAAT+TGG	0.360917	2:-5264089	None:intergenic
AAGGCGTGTCCAGTTTGTCG+AGG	0.678559	2:+5261012	MsaT006424.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	5259594	5264867	5259594	ID=MsaG006424
Chr2	mRNA	5259594	5264867	5259594	ID=MsaT006424.1;Parent=MsaG006424
Chr2	exon	5259594	5259726	5259594	ID=MsaT006424.1.exon1;Parent=MsaT006424.1
Chr2	CDS	5259594	5259726	5259594	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5260984	5261084	5260984	ID=MsaT006424.1.exon2;Parent=MsaT006424.1
Chr2	CDS	5260984	5261084	5260984	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5261184	5261316	5261184	ID=MsaT006424.1.exon3;Parent=MsaT006424.1
Chr2	CDS	5261184	5261316	5261184	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5261406	5261469	5261406	ID=MsaT006424.1.exon4;Parent=MsaT006424.1
Chr2	CDS	5261406	5261469	5261406	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5261562	5262291	5261562	ID=MsaT006424.1.exon5;Parent=MsaT006424.1
Chr2	CDS	5261562	5262291	5261562	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5262562	5262888	5262562	ID=MsaT006424.1.exon6;Parent=MsaT006424.1
Chr2	CDS	5262562	5262888	5262562	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5263539	5263994	5263539	ID=MsaT006424.1.exon7;Parent=MsaT006424.1
Chr2	CDS	5263539	5263994	5263539	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5264080	5264152	5264080	ID=MsaT006424.1.exon8;Parent=MsaT006424.1
Chr2	CDS	5264080	5264152	5264080	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5264238	5264323	5264238	ID=MsaT006424.1.exon9;Parent=MsaT006424.1
Chr2	CDS	5264238	5264323	5264238	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5264549	5264668	5264549	ID=MsaT006424.1.exon10;Parent=MsaT006424.1
Chr2	CDS	5264549	5264668	5264549	ID=cds.MsaT006424.1;Parent=MsaT006424.1
Chr2	exon	5264787	5264867	5264787	ID=MsaT006424.1.exon11;Parent=MsaT006424.1
Chr2	CDS	5264787	5264867	5264787	ID=cds.MsaT006424.1;Parent=MsaT006424.1

Gene Sequence

>MsaT006424.1

ATGTCCACCGGACCATCTCCGGTGCAGCCGTACCGACGGCCGACAATGGCGGTGCAAACGTCGAGCGATGGAAAACGTGAAGTTATGCGAAGTTCATCATCTTCAACTTCAACATCGGCAGAAGAAAGTGAAGGTATTTCGACACTCAAAATGAGGTTAAGAAGGCGTGTCCAGTTTGTCGAGGAACTTGTTCATGTAAAGATTGCCGAGCATGTCAGTGTAAAGACCGTGAAAGATTGTTTGGCTGGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCCGTATGCTCCTTCTGGTAATAAAACAAATAAGCGAAGACCAGCATGCAGAGCCAGAAACAGAAGCGAAAAATAAAGGGGAAAGTATTTGTGATATTCTCATCAAGCAAATCGAATTTGACTGCAATGAGAAAATTGACTGCAACTACTGCAGAACACCTATTCTGAATCTTCACATAAGCTGCCTTAACTGTTCCTACAGTCTATGCTTAAGATGTTGTCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATAAATTCTCCATTGACTGAGTTACCTGACAAAATGGACACTTGCATTGCTGATGAAAGTTGCCTTTTAGAAGACAAGAGCATTTCTAGCGACAATGAAACTGATACGTCAATGTTGCTGGATTCGACTGGTTTTAACGGTACAACTGACAGTATATCATGCCCTCCTTCAGAGCTAGGTGGTTGTGGTAATGACAACCTTGATTTGAGATGTGTTTTTCCGATAAGCTGGATCGAAGAAATGGAAGCTAAGGCAGAAGAGATAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAACTCAAGTTGCTCACTTTGTATTGACAAAGATCATAAAACTAAGAGACATAAGCAATTTGAAGATGCTGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGTTTTCGACATCAATTGCGATCATTTTGAACACTTTCAAAAACACTGGGGGAAAGGCCATCCTGTAGTAGTCCGAGACGTGCTCCGAAGTACGAAAAAACTAAGTTGGGATCCTCTGGTCTTGTTCTGTGCTTATCTTGAAAGGAGCATTGCAAGATATGAGAATAATAAAGACTTACTTGAAGCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGACAGCATTTTACTGGCTCTCTTAAATATCAACCTCGGAAAAATGATTGGCATGAGACGCTGAAACTAAATGGATGGTTATCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCACTTCAAGAATACATGAATCCGAGGTTCGGTCTTCTGAATTTAGCTGCAAATATGACAGAGGGGAGAGCAGCAATACATGATAAAGGCCCATATGTATACATTTCTTATGGCTGTGCTGACAACAAAGCTTATTCTGTGCTAAATCTCTCTTATGACTCGTATGATGTGGTTAATATTATGGTTTATACCACAGATGTTCCTGTCTCTACAGAACATCTTACTAAAATAACTAAGTTATTGAAGAAGCACAGAACTCTGTGTCAAAGGGGGTCACCGACTGAAAATGCAGAAGACGCGGAACAAAAGGAACCAGAGAGTATTGTAAGCGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACATCTTACATCTCTACTGAAGTGAAAGCAATAGCTAGTCAAAGTTTAGAGAACAATACTTCCAGCAATGGAGAATGTGGTTCTGGTTCTGATGCTGAAAAAACAGAAAGCTCTTTACCTTTCCACAAGACAGATCAAAGCACTGAAATGTATTCTGTTGCTCAGTGGGATGTCTTCCGGAGACAGGATGTACCGAAGCTTTTAGAATACCTCAAAAGACACAGGGATGAATTTTCTTTTACCAACGAGTATGACAGCAATAAGATAGTTCACCCAATTCTAGATCAGAGCATCTTTCTGGACAATACTCACAAAATGAGACTGAAGGAGGAGTTTGAAATCGAACCATGGACGTTTGAGCAACATGTTGGAGAAGCTATCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTATTGTGTTCAAGTGGTATTGGAATTTATGTCTTCCGAGAGTGTTGCTGAGTGTATCCAATTGACCGATGAGATCCATCTGCTTCCAGAGAACCACAAAGCAAAAGTAGACAAGATTGAGGTGAAGAAAATGGCTCTTCATAGCATGGATATGGCGATAAAAGAAATACGCGAGCTCACTTCCAATCCAAAACATGATTGA

Protein sequence

>MsaT006424.1

MSTGPSPVQPYRRPTMAVQTSSDGKREVMRSSSSSTSTSAEESEGISTLKMRLRRRVQFVEELVHVKIAEHVSVKTVKDCLAGTSRVDRILHFHYLVRMLLLVIKQISEDQHAEPETEAKNKGESICDILIKQIEFDCNEKIDCNYCRTPILNLHISCLNCSYSLCLRCCQTLSQGSPFEHINSPLTELPDKMDTCIADESCLLEDKSISSDNETDTSMLLDSTGFNGTTDSISCPPSELGGCGNDNLDLRCVFPISWIEEMEAKAEEIVCSYEVPEILDKNSSCSLCIDKDHKTKRHKQFEDAARREDSNDNCLFYPTVFDINCDHFEHFQKHWGKGHPVVVRDVLRSTKKLSWDPLVLFCAYLERSIARYENNKDLLEACLDWWEVEINIRQHFTGSLKYQPRKNDWHETLKLNGWLSSQLFKEQFPAHFAEVIGALPLQEYMNPRFGLLNLAANMTEGRAAIHDKGPYVYISYGCADNKAYSVLNLSYDSYDVVNIMVYTTDVPVSTEHLTKITKLLKKHRTLCQRGSPTENAEDAEQKEPESIVSEGTDFYRRVNRTSYISTEVKAIASQSLENNTSSNGECGSGSDAEKTESSLPFHKTDQSTEMYSVAQWDVFRRQDVPKLLEYLKRHRDEFSFTNEYDSNKIVHPILDQSIFLDNTHKMRLKEEFEIEPWTFEQHVGEAIIIPAGCPYQIRNSKYCVQVVLEFMSSESVAECIQLTDEIHLLPENHKAKVDKIEVKKMALHSMDMAIKEIRELTSNPKHD*