AlfalfaGEDB | MsaG006426

M. sativa ssp. caerulea / MsaG006426

KEGG: K15601
GO: GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02373.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006426	XP_013462466.1	94.331	829	28	5	43	853	136	963	0.0	1604

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006426	sp\|Q9SSE9\|JMJ25_ARATH	33.650	526	260	12	343	843	429	890	4.20e-74	265
MsaG006426	sp\|Q9SSE9\|JMJ25_ARATH	31.515	165	110	3	113	276	155	317	2.25e-17	90.9

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006426	tr\|A0A072V3U7\|A0A072V3U7_MEDTR	94.331	829	28	5	43	853	136	963	0.0	1582

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006426	TR	Jumonji

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000023	MsaG006426	0.807789	7.240454e-50	1.172343e-47
MsaG000032	MsaG006426	0.889012	7.759821e-73	2.172716e-69
MsaG000048	MsaG006426	0.829159	1.078883e-54	3.047934e-52
MsaG000137	MsaG006426	0.879431	2.639394e-69	4.640595e-66
MsaG000138	MsaG006426	0.827843	2.234065e-54	6.082661e-52
MsaG000202	MsaG006426	0.874073	1.852111e-67	2.557546e-64
MsaG000227	MsaG006426	0.812487	7.112799e-51	1.291061e-48
MsaG000247	MsaG006426	0.807208	9.604442e-50	1.533586e-47
MsaG000260	MsaG006426	0.828028	2.018458e-54	5.524014e-52
MsaG000286	MsaG006426	0.819622	1.845250e-52	4.017657e-50

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006426	MtrunA17_Chr2g0281051	94.331	829	28	5	43	853	136	963	0.0	1582
MsaG006426	MtrunA17_Chr4g0048531	60.568	563	168	9	331	847	725	1279	0.0	657
MsaG006426	MtrunA17_Chr4g0048531	55.077	325	122	7	44	350	182	500	9.11e-95	323
MsaG006426	MtrunA17_Chr7g0275771	34.777	808	434	22	113	847	140	927	1.11e-142	446
MsaG006426	MtrunA17_Chr4g0075261	33.119	779	439	20	88	843	144	863	7.92e-122	389
MsaG006426	MtrunA17_Chr1g0211711	33.912	749	419	17	113	836	343	1040	1.48e-118	385
MsaG006426	MtrunA17_Chr1g0192011	30.093	864	501	22	30	851	165	967	1.14e-115	375
MsaG006426	MtrunA17_Chr1g0183311	34.367	774	426	20	113	843	144	878	6.52e-111	360
MsaG006426	MtrunA17_Chr2g0289121	32.436	743	414	18	111	843	154	818	4.74e-99	327
MsaG006426	MtrunA17_Chr5g0420361	34.074	675	380	20	195	843	157	792	1.61e-91	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006426	AT4G21430.1	36.794	867	434	21	25	849	123	917	1.17e-164	503
MsaG006426	AT4G00990.1	35.025	788	430	21	106	843	73	828	2.03e-138	432
MsaG006426	AT1G62310.1	34.557	790	405	18	78	833	172	883	9.03e-128	405
MsaG006426	AT4G00990.3	34.290	732	399	21	106	787	73	772	6.95e-118	376
MsaG006426	AT4G00990.2	34.384	730	397	21	106	785	73	770	7.78e-118	376
MsaG006426	AT1G09060.2	30.495	869	469	27	38	851	109	897	2.96e-100	333
MsaG006426	AT1G09060.1	30.495	869	469	27	38	851	109	897	2.96e-100	333
MsaG006426	AT1G09060.4	30.495	869	469	27	38	851	123	911	3.62e-100	333
MsaG006426	AT1G09060.3	30.495	869	469	27	38	851	123	911	3.62e-100	333
MsaG006426	AT1G11950.2	33.395	542	323	12	113	634	193	716	1.81e-77	268

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Find 151 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTAAGTTGGGATCCTC+TGG	0.488482	2:+5296652	MsaT006426.1:CDS
AAACTGTTCTTTGAATAGTT+GGG	0.497020	2:-5297131	None:intergenic
AAATGCTCTTGTCTTCTAAA+AGG	0.324737	2:-5296209	None:intergenic
AAATGTATTCTGTTGCTCAG+TGG	0.670307	2:+5298345	MsaT006426.1:CDS
AAATTCAGAAGACCGAACCT+CGG	0.675191	2:-5297208	None:intergenic
AACCACCTAGCTCTGAAGGA+GGG	0.641948	2:-5296308	None:intergenic
AACGAAGGAAGAATGTCCAC+CGG	0.642524	2:+5294057	None:intergenic
AACTGATACGTCAATGTTGC+TGG	0.394642	2:+5296245	MsaT006426.1:CDS
AAGATGCTCTGATCTAGAAT+TGG	0.360917	2:-5298558	None:intergenic
AAGGCGTGTCCAGTTTGTCG+AGG	0.678559	2:+5295485	MsaT006426.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	5294069	5299331	5294069	ID=MsaG006426
Chr2	mRNA	5294069	5299331	5294069	ID=MsaT006426.1;Parent=MsaG006426
Chr2	exon	5294069	5294201	5294069	ID=MsaT006426.1.exon1;Parent=MsaT006426.1
Chr2	CDS	5294069	5294201	5294069	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5294452	5294627	5294452	ID=MsaT006426.1.exon2;Parent=MsaT006426.1
Chr2	CDS	5294452	5294627	5294452	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5294744	5294862	5294744	ID=MsaT006426.1.exon3;Parent=MsaT006426.1
Chr2	CDS	5294744	5294862	5294744	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5295457	5295562	5295457	ID=MsaT006426.1.exon4;Parent=MsaT006426.1
Chr2	CDS	5295457	5295562	5295457	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5295657	5295789	5295657	ID=MsaT006426.1.exon5;Parent=MsaT006426.1
Chr2	CDS	5295657	5295789	5295657	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5295879	5295942	5295879	ID=MsaT006426.1.exon6;Parent=MsaT006426.1
Chr2	CDS	5295879	5295942	5295879	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5296035	5296576	5296035	ID=MsaT006426.1.exon7;Parent=MsaT006426.1
Chr2	CDS	5296035	5296576	5296035	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5296615	5296760	5296615	ID=MsaT006426.1.exon8;Parent=MsaT006426.1
Chr2	CDS	5296615	5296760	5296615	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5297031	5297357	5297031	ID=MsaT006426.1.exon9;Parent=MsaT006426.1
Chr2	CDS	5297031	5297357	5297031	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5298008	5298463	5298008	ID=MsaT006426.1.exon10;Parent=MsaT006426.1
Chr2	CDS	5298008	5298463	5298008	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5298549	5298621	5298549	ID=MsaT006426.1.exon11;Parent=MsaT006426.1
Chr2	CDS	5298549	5298621	5298549	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5298707	5298792	5298707	ID=MsaT006426.1.exon12;Parent=MsaT006426.1
Chr2	CDS	5298707	5298792	5298707	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5299018	5299137	5299018	ID=MsaT006426.1.exon13;Parent=MsaT006426.1
Chr2	CDS	5299018	5299137	5299018	ID=cds.MsaT006426.1;Parent=MsaT006426.1
Chr2	exon	5299251	5299331	5299251	ID=MsaT006426.1.exon14;Parent=MsaT006426.1
Chr2	CDS	5299251	5299331	5299251	ID=cds.MsaT006426.1;Parent=MsaT006426.1

Gene Sequence

>MsaT006426.1

ATGTCCACCGGACCATCTCCGGTGCAGCCGTACCGACGGCCGACAATGGCGGTGCAAACGTCGAGCGATGGAAAACGTGAAGTTATGCGAAGTTCATCATCTTCAACTTCAACATCGGCAGAAGAAAGTGAAGGTGAATTGAGGAAAGAATTGCCCAATGGGGTTATGGAAATTGCTCCTGTTTCGACTTCACGTCGTGATGATGATGATGATGTTGTTGATTTTCACTGTAATGGTAAAGCTGTTGTTACACCACCTTACTTCAGGTCCAAGAATGTTGATAGAAGGGTCCCTTATGATAATTTTCAAGTTTTGAAGAAGTGTAGGAGGAAGAAGTGTCATTGGTGTCAGAGTAGTGATTCTTTGAATTTGATCAAGTGTAACAACTGCCAGAAAGAGTTTTTCTGCATGGATTGCATTAAACAACGGTATTTCGACACTCAAAATGAGGTTAAGAAGGCGTGTCCAGTTTGTCGAGGAACTTGTTCATGTAAAGATTGCCGAGCAAGTCAGTGTAAAGACCGTGAAAGTAAGGATTGTTTGGCTGGTACAAGCAGAGTTGATAGGATATTGCATTTTCATTATTTGGTCTGTATGCTCCTTCCGGTAATAAAACAAATAAGCGAAGACCAGCATGCAGAGCTAGAAACAGAAGCGAAAAATAAAGGGGAAAGTATTTCTGATATTCTCATCAAGCAAATCGAATTTGACTGCAATGAGAAAATTGACTGCAACTACTGCAAAACACCTATTCTGAATCTTCACAGAAGCTGCCTTAACTGTTCCTACAGTCTATGCTTAAGATGTTGTCAGACATTAAGTCAAGGAAGCCCCTTTGAGCATATAAATTCTCCATTGACTGAGTTACCTGACAAAATGGACACTTGCATTGCTGATGAAAGTTGCCTTTTAGAAGACAAGAGCATTTCTAGCGACAATGAAACTGATACGTCAATGTTGCTGGATTCGACTGGTTTTAACGGTACAACTGACAGTATATCATGCCCTCCTTCAGAGCTAGGTGGTTGTGGTAATGACAACCTTGATTTGAGATGTGTTTTTCCGATAAGCTGGATCGAAGAAATGGAAGCTAAGGCAGAAGAGATAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAACTCAAGTTGCTCACTTTGTATTGACAAAGATCATAAAACTAAGAGACATAAGCAATTTGAAGATGCTGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGTTTTCGACATCAATTGCCATCCTGTAGTAGTCCGAGGCGTGCTCAATGCGAAAAAACTAAGTTGGGATCCTCTGGTCTTGTTCTGTGCTTATCTTGAAAGGAGCATTGCAAGATATGAGAATAATAAAGACTTACTTGAAGCTTGTTTGGATTGGTGGGAGGTTGAAATTAACATTAGACAGCATTTTACTGGCTCTCTTAAATATCAACCTCGGAAAAATGATTGGCATGAGACGCTGAAACTAAATGGATGGTTATCTTCCCAACTATTCAAAGAACAGTTTCCAGCTCATTTTGCTGAAGTAATTGGTGCTCTTCCACTTCAAGAATACATGAATCCGAGGTTCGGTCTTCTGAATTTAGCTGCAAATATGACAGAGGGGAGAGCAGCAATACATGATAAAGGCCCATATGTATACATTTCTTATGGCTGTGCTGACAACAAAGCTTATTCTGTGCTAAATCTCTCTTATGACTCGTATGATGTGGTTAATATTATGGTTTATACCACAGATGTTCCTGTCTCTACAGAACATCTTACTAAAATAACTAAGTTATTGAAGAAGCACAGAACTCTGTGTCAAAGGGGGTCACCGACTGAAAATGCAGAAGACGCGGAACAAAAGGAACCAGAGAGTATTGTAAGCGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACATCTTACATCTCTACTGAAGTGAAAGCAATAGCTAGTCAAAGTTTAGAGAACAATACTTCCAGCAATGGAGAATGTGGTTCTGGTTCTGATGCTGAAAAAACAGAAAGCTCTTTACCTTTCCACAAGACAGATCAAAGCACTGAAATGTATTCTGTTGCTCAGTGGGATGTCTTCCGGAGACAGGATGTACCGAAGCTTTTAGAATACCTCAAAAGACACAGGGATGAATTTTCTTTTACCAACGAGTATGACAGCAATAAGATAGTTCACCCAATTCTAGATCAGAGCATCTTTCTGGACAATACTCACAAAATGAGACTGAAGGAGGAGTTTGAAATCGAACCATGGACGTTTGAGCAACATGTTGGAGAAGCTATCATCATTCCTGCTGGATGTCCATACCAGATTAGGAATTCTAAGTATTGTGTTCAAGTGGTATTGGAATTTATGTCTTCCGAGAGTGTTGCTGAGTGTATCCAATTGACCGATGAGATCCATCTGCTTCCAGAGAACCACAAAGCAAAAGTAGACAAGATTGAGGTGAAGAAAATGGCTCTTCATAGCATGGATATGGCGATAAAAGAAATCTGCGAGCTCACTTCCAATCCAAAACATGATTGA

Protein sequence

>MsaT006426.1

MSTGPSPVQPYRRPTMAVQTSSDGKREVMRSSSSSTSTSAEESEGELRKELPNGVMEIAPVSTSRRDDDDDVVDFHCNGKAVVTPPYFRSKNVDRRVPYDNFQVLKKCRRKKCHWCQSSDSLNLIKCNNCQKEFFCMDCIKQRYFDTQNEVKKACPVCRGTCSCKDCRASQCKDRESKDCLAGTSRVDRILHFHYLVCMLLPVIKQISEDQHAELETEAKNKGESISDILIKQIEFDCNEKIDCNYCKTPILNLHRSCLNCSYSLCLRCCQTLSQGSPFEHINSPLTELPDKMDTCIADESCLLEDKSISSDNETDTSMLLDSTGFNGTTDSISCPPSELGGCGNDNLDLRCVFPISWIEEMEAKAEEIVCSYEVPEILDKNSSCSLCIDKDHKTKRHKQFEDAARREDSNDNCLFYPTVFDINCHPVVVRGVLNAKKLSWDPLVLFCAYLERSIARYENNKDLLEACLDWWEVEINIRQHFTGSLKYQPRKNDWHETLKLNGWLSSQLFKEQFPAHFAEVIGALPLQEYMNPRFGLLNLAANMTEGRAAIHDKGPYVYISYGCADNKAYSVLNLSYDSYDVVNIMVYTTDVPVSTEHLTKITKLLKKHRTLCQRGSPTENAEDAEQKEPESIVSEGTDFYRRVNRTSYISTEVKAIASQSLENNTSSNGECGSGSDAEKTESSLPFHKTDQSTEMYSVAQWDVFRRQDVPKLLEYLKRHRDEFSFTNEYDSNKIVHPILDQSIFLDNTHKMRLKEEFEIEPWTFEQHVGEAIIIPAGCPYQIRNSKYCVQVVLEFMSSESVAECIQLTDEIHLLPENHKAKVDKIEVKKMALHSMDMAIKEICELTSNPKHD*