AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006470 MtrunA17_Chr2g0281601 95.827 1318 40 1 1 1318 1 1303 0.0 2622
MsaG006470 MtrunA17_Chr1g0212331 58.128 812 295 13 530 1318 251 1040 0.0 895
MsaG006470 MtrunA17_Chr4g0024921 30.189 848 411 22 536 1317 202 934 1.11e-98 337
MsaG006470 MtrunA17_Chr2g0320751 30.273 806 405 19 557 1316 321 1015 3.23e-98 338
MsaG006470 MtrunA17_Chr7g0255821 27.020 792 384 20 558 1316 190 820 2.24e-74 265
MsaG006470 MtrunA17_Chr1g0168031 31.384 513 229 12 592 1058 534 969 3.11e-64 239
MsaG006470 MtrunA17_Chr1g0168031 47.904 167 79 3 1150 1316 994 1152 3.04e-37 153
MsaG006470 MtrunA17_Chr7g0257101 29.778 225 148 2 1066 1290 1121 1335 7.85e-24 109
MsaG006470 MtrunA17_Chr1g0163011 39.850 133 80 0 1163 1295 586 718 1.09e-23 108
MsaG006470 MtrunA17_Chr1g0175191 40.152 132 79 0 1159 1290 1074 1205 2.32e-23 108
MsaG006470 MtrunA17_Chr1g0175191 23.762 303 154 8 680 970 574 811 1.31e-13 76.3
MsaG006470 MtrunA17_Chr5g0428401 27.160 324 169 9 676 966 487 776 6.84e-23 106
MsaG006470 MtrunA17_Chr5g0428401 31.061 132 82 2 1165 1287 1495 1626 2.21e-14 79.0
MsaG006470 MtrunA17_Chr5g0403921 38.983 118 71 1 1165 1281 524 641 1.00e-20 99.0
MsaG006470 MtrunA17_Chr4g0052341 38.961 154 88 4 1163 1314 1076 1225 1.53e-20 99.0
MsaG006470 MtrunA17_Chr4g0017211 31.928 166 108 2 1154 1316 1819 1982 1.56e-20 99.0
MsaG006470 MtrunA17_Chr4g0017211 24.476 429 191 13 565 969 1446 1765 1.56e-16 85.9
MsaG006470 MtrunA17_Chr8g0384531 32.948 173 110 3 1147 1318 741 908 4.51e-20 97.1
MsaG006470 MtrunA17_Chr1g0183681 34.395 157 98 2 1163 1318 751 903 5.81e-20 97.1
MsaG006470 MtrunA17_Chr8g0348721 38.158 152 77 4 1163 1312 1329 1465 8.17e-19 93.6
MsaG006470 MtrunA17_Chr4g0066741 36.242 149 93 2 1165 1312 507 654 1.08e-18 92.8
MsaG006470 MtrunA17_Chr4g0066741 27.841 176 115 3 795 970 307 470 1.19e-14 79.3
MsaG006470 MtrunA17_Chr4g0040301 37.692 130 81 0 1161 1290 394 523 1.99e-18 91.3
MsaG006470 MtrunA17_Chr2g0286291 35.570 149 94 2 1165 1312 510 657 4.17e-18 90.9
MsaG006470 MtrunA17_Chr2g0286291 27.528 178 117 3 793 970 308 473 2.17e-14 78.6
MsaG006470 MtrunA17_Chr7g0248031 35.664 143 87 3 1163 1303 1337 1476 1.12e-17 89.7
MsaG006470 MtrunA17_Chr3g0137091 33.333 135 89 1 1163 1296 627 761 1.74e-17 89.0
MsaG006470 MtrunA17_Chr1g0205891 38.095 126 77 1 1163 1287 702 827 8.36e-17 86.7
MsaG006470 MtrunA17_Chr1g0205891 27.957 186 113 5 793 968 493 667 4.34e-11 67.8
MsaG006470 MtrunA17_Chr5g0442141 35.433 127 81 1 1165 1290 951 1077 1.64e-16 85.9
MsaG006470 MtrunA17_Chr5g0442141 24.837 306 143 12 680 968 670 905 4.61e-13 74.3
MsaG006470 MtrunA17_Chr5g0394201 37.302 126 78 1 1163 1287 688 813 1.90e-16 85.5
MsaG006470 MtrunA17_Chr4g0066651 33.117 154 96 3 1165 1312 1326 1478 3.22e-16 85.1
MsaG006470 MtrunA17_Chr3g0095091 34.646 127 82 1 1165 1290 905 1031 4.11e-16 84.3
MsaG006470 MtrunA17_Chr3g0095091 24.585 301 150 10 680 968 624 859 6.03e-15 80.9
MsaG006470 MtrunA17_Chr7g0232121 31.757 148 89 1 1163 1298 381 528 6.61e-16 83.6
MsaG006470 MtrunA17_Chr7g0231521 31.081 148 90 1 1163 1298 302 449 1.54e-15 82.0
MsaG006470 MtrunA17_Chr1g0190381 36.552 145 78 2 1162 1292 203 347 5.63e-15 79.7
MsaG006470 MtrunA17_Chr5g0393461 28.846 156 108 2 1164 1316 556 711 2.13e-13 75.5
MsaG006470 MtrunA17_Chr7g0225791 31.944 144 90 3 1161 1297 1100 1242 9.05e-13 73.6
MsaG006470 MtrunA17_Chr7g0232991 33.871 124 73 3 1161 1277 475 596 1.01e-12 72.8
MsaG006470 MtrunA17_Chr3g0086111 36.036 111 71 0 1165 1275 552 662 2.02e-12 72.4
MsaG006470 MtrunA17_Chr4g0069451 32.090 134 88 1 1157 1287 477 610 2.24e-12 71.6
MsaG006470 MtrunA17_Chr4g0047081 31.690 142 89 3 1161 1295 1050 1190 2.55e-12 72.0
MsaG006470 MtrunA17_Chr2g0296421 37.398 123 72 2 1161 1278 862 984 2.89e-12 71.6
MsaG006470 MtrunA17_Chr8g0352361 36.585 123 73 2 1161 1278 713 835 6.87e-12 70.5
MsaG006470 MtrunA17_Chr7g0233031 32.000 150 88 4 1160 1298 1059 1205 7.43e-12 70.5
MsaG006470 MtrunA17_Chr2g0320781 31.618 136 81 3 1161 1287 107 239 1.27e-11 66.2
MsaG006470 MtrunA17_Chr3g0083491 29.508 122 84 2 1164 1285 1170 1289 2.20e-11 68.9
MsaG006470 MtrunA17_Chr7g0233001 30.986 142 90 3 1161 1295 335 475 3.84e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006470 AT1G61140.1 47.376 1391 544 43 1 1317 1 1277 0.0 997
MsaG006470 AT1G61140.3 51.925 1169 430 34 215 1317 17 1119 0.0 991
MsaG006470 AT1G11100.4 60.625 800 268 11 531 1317 504 1269 0.0 915
MsaG006470 AT1G11100.2 60.625 800 268 11 531 1317 503 1268 0.0 915
MsaG006470 AT1G11100.3 60.625 800 268 11 531 1317 361 1126 0.0 913
MsaG006470 AT1G50410.2 57.478 809 308 10 531 1318 188 981 0.0 889
MsaG006470 AT1G50410.1 57.478 809 308 10 531 1318 188 981 0.0 889
MsaG006470 AT1G50410.3 57.478 809 308 10 531 1318 188 981 0.0 889
MsaG006470 AT1G11100.1 58.965 792 250 9 531 1317 504 1225 0.0 882
MsaG006470 AT1G11100.5 58.965 792 250 9 531 1317 361 1082 0.0 879
MsaG006470 AT3G20010.1 55.758 825 314 14 528 1318 240 1047 0.0 838
MsaG006470 AT3G20010.5 55.758 825 314 14 528 1318 240 1047 0.0 838
MsaG006470 AT3G20010.7 55.758 825 314 14 528 1318 240 1047 0.0 838
MsaG006470 AT3G20010.3 56.692 792 292 14 561 1318 7 781 0.0 820
MsaG006470 AT3G20010.2 56.274 773 287 14 580 1318 1 756 0.0 787
MsaG006470 AT1G50410.4 54.161 709 289 10 531 1218 188 881 0.0 714
MsaG006470 AT3G20010.4 52.282 723 294 14 528 1216 240 945 0.0 663
MsaG006470 AT3G20010.6 52.282 723 294 14 528 1216 240 945 0.0 663
MsaG006470 AT3G20010.8 52.282 723 294 14 528 1216 240 945 0.0 663
MsaG006470 AT1G61140.2 42.188 1088 461 38 1 1011 1 997 0.0 625
MsaG006470 AT3G16600.1 43.208 530 205 4 539 1068 23 456 1.59e-138 437
MsaG006470 AT3G16600.1 54.412 136 49 2 1181 1309 479 608 2.27e-34 141
MsaG006470 AT5G22750.1 32.832 731 369 18 592 1316 414 1028 4.62e-100 344
MsaG006470 AT5G43530.1 31.806 764 335 19 581 1316 671 1276 2.65e-98 343
MsaG006470 AT1G05120.1 29.643 840 378 20 556 1316 126 831 6.17e-89 308
MsaG006470 AT1G05120.2 29.643 840 378 20 556 1316 169 874 2.10e-88 307
MsaG006470 AT5G05130.1 29.677 775 369 20 560 1295 222 859 8.10e-87 303
MsaG006470 AT1G02670.4 32.028 434 166 10 565 969 119 452 1.10e-50 189
MsaG006470 AT1G02670.5 32.258 434 165 10 565 969 92 425 9.71e-50 188
MsaG006470 AT1G02670.5 50.485 103 51 0 1165 1267 512 614 1.39e-24 110
MsaG006470 AT1G02670.6 32.258 434 165 10 565 969 92 425 1.39e-49 188
MsaG006470 AT1G02670.6 47.368 152 79 1 1165 1316 512 662 8.53e-35 143
MsaG006470 AT1G02670.2 32.028 434 166 10 565 969 119 452 1.43e-49 188
MsaG006470 AT1G02670.2 50.485 103 51 0 1165 1267 539 641 1.54e-24 110
MsaG006470 AT1G02670.3 32.258 434 165 10 565 969 119 452 1.65e-49 188
MsaG006470 AT1G02670.3 47.368 152 79 1 1165 1316 539 689 1.07e-34 143
MsaG006470 AT1G02670.7 30.097 412 180 11 565 969 119 429 9.21e-41 161
MsaG006470 AT1G02670.7 47.368 152 79 1 1165 1316 516 666 7.17e-35 143
MsaG006470 AT1G02670.1 30.340 412 179 11 565 969 130 440 9.42e-41 162
MsaG006470 AT1G02670.1 47.368 152 79 1 1165 1316 527 677 8.53e-35 143
MsaG006470 AT2G40770.2 27.536 345 189 10 645 966 475 781 6.33e-28 123
MsaG006470 AT2G40770.2 31.902 163 100 3 1165 1316 1451 1613 1.78e-16 86.3
MsaG006470 AT2G40770.1 27.536 345 189 10 645 966 475 781 6.33e-28 123
MsaG006470 AT2G40770.1 31.902 163 100 3 1165 1316 1451 1613 1.78e-16 86.3
MsaG006470 AT2G40770.3 27.536 345 189 10 645 966 475 781 6.33e-28 123
MsaG006470 AT2G40770.3 31.902 163 100 3 1165 1316 1451 1613 1.78e-16 86.3
MsaG006470 AT2G02090.1 40.602 133 79 0 1163 1295 604 736 2.14e-24 111
MsaG006470 AT3G57300.1 41.270 126 74 0 1165 1290 1224 1349 6.08e-24 110
MsaG006470 AT3G57300.4 41.270 126 74 0 1165 1290 1224 1349 6.08e-24 110
MsaG006470 AT3G57300.2 41.270 126 74 0 1165 1290 1257 1382 7.21e-24 110
MsaG006470 AT3G12810.2 40.625 128 76 0 1163 1290 1087 1214 4.58e-23 107
MsaG006470 AT3G12810.1 40.625 128 76 0 1163 1290 1091 1218 4.62e-23 107
MsaG006470 AT3G54280.2 31.319 182 119 3 1139 1316 1836 2015 1.64e-21 102
MsaG006470 AT3G54280.2 24.651 430 190 15 565 969 1478 1798 1.06e-15 83.6
MsaG006470 AT3G54280.1 31.319 182 119 3 1139 1316 1805 1984 1.81e-21 102
MsaG006470 AT3G54280.1 24.651 430 190 15 565 969 1447 1767 2.06e-15 82.8
MsaG006470 AT5G66750.1 35.075 134 86 1 1165 1297 542 675 7.70e-21 99.8
MsaG006470 AT3G54460.2 21.674 669 415 23 676 1312 456 1047 1.52e-20 99.4
MsaG006470 AT3G54460.1 21.824 669 414 23 676 1312 753 1344 1.92e-20 99.0
MsaG006470 AT2G18760.4 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.1 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.2 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.7 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.5 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.6 33.758 157 99 2 1163 1318 743 895 1.20e-19 96.3
MsaG006470 AT2G18760.3 33.758 157 99 2 1163 1318 802 954 1.25e-19 96.3
MsaG006470 AT5G44800.1 39.370 127 75 1 1163 1287 1020 1146 1.46e-19 96.3
MsaG006470 AT1G03750.1 39.231 130 79 0 1161 1290 542 671 5.42e-19 94.0
MsaG006470 AT5G63950.1 34.848 132 86 0 1163 1294 748 879 7.04e-19 93.6
MsaG006470 AT5G63950.2 34.848 132 86 0 1163 1294 731 862 7.28e-19 93.6
MsaG006470 AT2G25170.1 32.026 153 103 1 1163 1314 611 763 4.27e-18 91.3
MsaG006470 AT2G25170.4 32.026 153 103 1 1163 1314 611 763 4.27e-18 91.3
MsaG006470 AT2G25170.2 32.026 153 103 1 1163 1314 628 780 4.40e-18 91.3
MsaG006470 AT2G25170.3 32.026 153 103 1 1163 1314 637 789 4.93e-18 91.3
MsaG006470 AT2G46020.5 43.519 108 58 2 1163 1268 1323 1429 1.00e-17 90.5
MsaG006470 AT2G46020.1 43.519 108 58 2 1163 1268 1323 1429 1.00e-17 90.5
MsaG006470 AT2G46020.6 43.519 108 58 2 1163 1268 1323 1429 1.00e-17 90.5
MsaG006470 AT2G46020.2 43.519 108 58 2 1163 1268 1324 1430 1.06e-17 90.1
MsaG006470 AT2G46020.3 43.519 108 58 2 1163 1268 1324 1430 1.06e-17 90.1
MsaG006470 AT2G46020.4 43.519 108 58 2 1163 1268 1324 1430 1.06e-17 90.1
MsaG006470 AT5G18620.2 34.228 149 96 2 1165 1312 513 660 1.60e-17 89.4
MsaG006470 AT5G18620.2 26.404 178 119 3 793 970 311 476 9.35e-14 77.0
MsaG006470 AT5G18620.1 34.228 149 96 2 1165 1312 513 660 1.63e-17 89.4
MsaG006470 AT5G18620.1 26.404 178 119 3 793 970 311 476 9.42e-14 77.0
MsaG006470 AT2G44980.1 34.307 137 89 1 1163 1298 384 520 2.58e-17 88.6
MsaG006470 AT2G44980.1 24.834 302 156 9 680 968 105 348 1.79e-14 79.3
MsaG006470 AT2G13370.1 36.719 128 78 2 1165 1291 957 1082 4.18e-17 88.2
MsaG006470 AT2G13370.1 23.762 303 154 10 680 970 678 915 1.12e-13 77.0
MsaG006470 AT2G13370.2 36.719 128 78 2 1165 1291 957 1082 4.18e-17 88.2
MsaG006470 AT2G13370.2 23.762 303 154 10 680 970 678 915 1.12e-13 77.0
MsaG006470 AT2G13370.3 36.719 128 78 2 1165 1291 957 1082 4.18e-17 88.2
MsaG006470 AT2G13370.3 23.762 303 154 10 680 970 678 915 1.12e-13 77.0
MsaG006470 AT2G44980.3 32.653 147 88 1 1163 1298 392 538 6.29e-17 87.0
MsaG006470 AT2G44980.3 24.759 311 154 10 680 968 104 356 1.85e-13 75.9
MsaG006470 AT2G44980.2 32.653 147 88 1 1163 1298 393 539 6.62e-17 87.0
MsaG006470 AT2G44980.2 24.759 311 154 10 680 968 105 357 2.05e-13 75.9
MsaG006470 AT3G06400.3 33.557 149 97 2 1165 1312 508 655 9.21e-17 86.7
MsaG006470 AT3G06400.3 27.374 179 116 4 793 970 306 471 4.52e-14 78.2
MsaG006470 AT3G06400.2 33.557 149 97 2 1165 1312 508 655 9.45e-17 86.7
MsaG006470 AT3G06400.2 27.374 179 116 4 793 970 306 471 4.33e-14 78.2
MsaG006470 AT3G06400.1 33.557 149 97 2 1165 1312 508 655 9.60e-17 86.7
MsaG006470 AT3G06400.1 27.374 179 116 4 793 970 306 471 4.40e-14 78.2
MsaG006470 AT3G06010.1 39.683 126 75 1 1163 1287 729 854 2.18e-16 85.5
MsaG006470 AT3G06010.1 26.882 186 115 4 793 968 520 694 4.51e-12 71.6
MsaG006470 AT5G19310.2 37.795 127 76 2 1163 1287 447 572 5.34e-16 84.0
MsaG006470 AT5G19310.1 37.795 127 76 2 1163 1287 711 836 5.88e-16 84.3
MsaG006470 AT1G08600.1 36.986 146 76 3 1162 1292 1109 1253 9.38e-16 83.6
MsaG006470 AT1G08600.4 36.986 146 76 3 1162 1292 1130 1274 1.09e-15 83.6
MsaG006470 AT1G08600.3 36.986 146 76 3 1162 1292 1130 1274 1.09e-15 83.6
MsaG006470 AT1G08600.2 36.986 146 76 3 1162 1292 1130 1274 1.09e-15 83.6
MsaG006470 AT1G48310.1 35.878 131 84 0 1157 1287 478 608 1.95e-15 82.0
MsaG006470 AT1G48310.2 35.878 131 84 0 1157 1287 483 613 2.18e-15 82.0
MsaG006470 AT2G28290.3 31.373 153 100 2 1165 1312 1091 1243 2.66e-15 82.4
MsaG006470 AT2G28290.4 31.373 153 100 2 1165 1312 1091 1243 2.66e-15 82.4
MsaG006470 AT1G48310.3 35.878 131 84 0 1157 1287 478 608 2.67e-15 81.6
MsaG006470 AT2G28290.2 31.373 153 100 2 1165 1312 1091 1243 2.68e-15 82.4
MsaG006470 AT2G28290.1 31.373 153 100 2 1165 1312 1091 1243 2.70e-15 82.4
MsaG006470 AT2G28290.5 31.373 153 100 2 1165 1312 1092 1244 2.70e-15 82.4
MsaG006470 AT2G28290.6 31.373 153 100 2 1165 1312 1092 1244 2.79e-15 82.4
MsaG006470 AT3G24340.1 35.211 142 86 2 1160 1295 940 1081 1.61e-14 79.7
MsaG006470 AT4G31900.3 30.882 136 93 1 1163 1297 540 675 1.66e-14 79.7
MsaG006470 AT4G31900.3 20.984 386 165 9 594 969 247 502 9.36e-14 77.0
MsaG006470 AT4G31900.1 30.882 136 93 1 1163 1297 540 675 1.83e-14 79.3
MsaG006470 AT4G31900.1 22.000 300 151 7 680 969 276 502 1.16e-13 76.6
MsaG006470 AT4G31900.2 30.882 136 93 1 1163 1297 499 634 2.08e-14 79.3
MsaG006470 AT4G31900.2 22.000 300 151 7 680 969 235 461 1.29e-13 76.6
MsaG006470 AT3G19210.1 29.299 157 106 3 1164 1316 552 707 8.49e-13 73.9
MsaG006470 AT3G19210.2 29.299 157 106 3 1164 1316 550 705 9.80e-13 73.6
MsaG006470 AT3G19210.3 29.299 157 106 3 1164 1316 552 707 1.13e-12 73.2
MsaG006470 AT5G07810.1 36.842 114 72 0 1165 1278 556 669 1.37e-12 73.2
MsaG006470 AT2G21450.2 33.113 151 92 2 1161 1304 641 789 1.74e-12 72.8
MsaG006470 AT2G21450.3 33.113 151 92 2 1161 1304 543 691 1.83e-12 72.4
MsaG006470 AT2G21450.1 33.113 151 92 2 1161 1304 634 782 2.07e-12 72.4
MsaG006470 AT1G05490.1 32.500 160 85 4 1162 1298 1214 1373 8.17e-12 70.9

Find 272 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGAAGATTGTGACATATTA+AGG 0.161451 2:-5873804 None:intergenic
TGTCATTATGAAAAGTATTT+TGG 0.175717 2:-5873369 None:intergenic
GTTGACATACCTACACATTT+TGG 0.192757 2:+5872908 MsaT006470.1:CDS
AATTATTACCAAGATCTTAT+TGG 0.218434 2:+5873505 MsaT006470.1:CDS
TTTCTCAACTCCACAGATTT+AGG 0.220681 2:-5876566 None:intergenic
TGATTCACGTGCACAGTTTC+AGG 0.224899 2:+5876637 MsaT006470.1:CDS
AGAAAAGAAAGCCGTGTTTA+TGG 0.231645 2:+5878053 MsaT006470.1:CDS
TTCAAATTTCCTATGTTTCC+TGG 0.248753 2:-5873547 None:intergenic
ATGGTGTTGGTTCTGAATTC+TGG 0.250190 2:+5873065 MsaT006470.1:CDS
AATAAGATCTTGGTAATAAT+TGG 0.251287 2:-5873503 None:intergenic
AGCTCTGCACATGACTTCTT+TGG 0.260273 2:-5877963 None:intergenic
GACGTTTCACCTGGTGAATC+TGG 0.260753 2:+5871616 MsaT006470.1:CDS
GGATCCCTCAGTACTTCTTT+TGG 0.274007 2:-5873698 None:intergenic
GGCAAGCTCATAGGGATCTT+TGG 0.291230 2:-5875696 None:intergenic
ATAATTCGAACCCGAGTCTT+TGG 0.298617 2:+5872200 MsaT006470.1:CDS
TCAAGTTGCAAGGGCTTGTT+GGG 0.298726 2:+5875991 MsaT006470.1:CDS
TTCTGTGATTCTTTATACTT+TGG 0.300365 2:-5875967 None:intergenic
CATATTACGAGCTGCTTTGC+AGG 0.302385 2:+5873891 MsaT006470.1:CDS
GATAAAGATGACAAAGAAAA+AGG 0.303768 2:+5875794 MsaT006470.1:CDS
AATGATTCAGTTGGTTCTCT+TGG 0.309341 2:+5878087 MsaT006470.1:CDS
ATGATTCAGTTGGTTCTCTT+GGG 0.309444 2:+5878088 MsaT006470.1:CDS
CCTGTTGTTACCGGCAGTTC+TGG 0.309876 2:+5873031 MsaT006470.1:CDS
CACGGAGAGATTTGCTTTGC+AGG 0.310575 2:-5875648 None:intergenic
TCTGTGATTCTTTATACTTT+GGG 0.316193 2:-5875966 None:intergenic
TCAAATACTGTAACTCTTTG+TGG 0.321895 2:+5872175 MsaT006470.1:CDS
AAGCGCAGATGGTGCTTGTC+TGG 0.323133 2:+5876025 MsaT006470.1:CDS
AGCTCCACTTCTGCCGATAA+TGG 0.324987 2:+5878009 MsaT006470.1:CDS
AGAAGTGTTCAGTGTGGCTT+TGG 0.329661 2:-5877794 None:intergenic
GAAGGATATTCATTATTTAC+TGG 0.331394 2:-5873217 None:intergenic
CATCTACCACATGCTTGATT+TGG 0.335616 2:-5872240 None:intergenic
CCGGCTTGTGATCATTTACT+TGG 0.335876 2:+5877826 MsaT006470.1:CDS
TTTGATGGATTTCTATTGAT+AGG 0.338037 2:-5876151 None:intergenic
TTAGGTGGCAAGGATATAAT+AGG 0.339243 2:-5876548 None:intergenic
AGAGATCATCAATTGCATTC+TGG 0.347512 2:-5876057 None:intergenic
GTCATGTGCAGAGCTCTTCT+AGG 0.348030 2:+5877971 MsaT006470.1:CDS
CTCAAGTTGCAAGGGCTTGT+TGG 0.349503 2:+5875990 MsaT006470.1:CDS
TTGTCAACCAGAGGCTGCTT+AGG 0.355899 2:-5875767 None:intergenic
TGGCCTTCACTAGAAATATA+TGG 0.361832 2:-5873301 None:intergenic
TTTACTTGAAGCATGTCTTA+AGG 0.374252 2:+5878152 MsaT006470.1:CDS
GATGTTAGACCTGTTGTTAC+CGG 0.374400 2:+5873022 MsaT006470.1:CDS
GAAACTGCTAATAAATTTCC+AGG 0.375396 2:+5873529 MsaT006470.1:CDS
ACATCAAGTTTATACTGTTC+CGG 0.377744 2:+5875200 MsaT006470.1:CDS
ATGGCTTGATCTTCAGTTGT+GGG 0.378684 2:-5878520 None:intergenic
GGTGGTCGCAAGCTTGTCTA+AGG 0.380511 2:-5876856 None:intergenic
ATCAATAGAAATCCATCAAA+AGG 0.384451 2:+5876154 MsaT006470.1:CDS
ACAATGGTTGCATCTGCATT+TGG 0.386070 2:+5879927 MsaT006470.1:CDS
GCTCTGCACATGACTTCTTT+GGG 0.387459 2:-5877962 None:intergenic
ATCATACTTGGCAAGCTCAT+AGG 0.388352 2:-5875705 None:intergenic
AAGACACAATCGGAGTTTCT+AGG 0.388432 2:+5872837 MsaT006470.1:CDS
ACTTGTGGTTGCATTTCTAT+TGG 0.388746 2:-5875519 None:intergenic
AACTATTGCTTTAATACTAA+AGG 0.389146 2:+5875367 MsaT006470.1:CDS
TACTGCTCGTCGCGTGCCTT+TGG 0.391053 2:-5873868 None:intergenic
CATATTAAGGGAATTGAATT+CGG 0.395139 2:-5873791 None:intergenic
AATTCAGAACCAACACCATT+AGG 0.403730 2:-5873061 None:intergenic
AAGATCATGCTGTGCCGAAT+AGG 0.408268 2:+5875825 MsaT006470.1:CDS
ACGTTCTCATGCTAGATCTA+TGG 0.409082 2:+5878491 MsaT006470.1:CDS
GTTACAATTCTACTACTCTA+TGG 0.409806 2:+5876894 MsaT006470.1:CDS
ACTAAACCATTCTCAGGAAG+TGG 0.411271 2:-5875464 None:intergenic
CAACTAGTGTTCTGCGACAG+TGG 0.415110 2:+5875600 MsaT006470.1:CDS
AATTCGGCAGATCGACTTGT+AGG 0.415384 2:-5873775 None:intergenic
TGTTATGATAATGTCTTTGA+AGG 0.415998 2:+5878432 MsaT006470.1:CDS
CAGTTTCACCAATAAGATCT+TGG 0.418600 2:-5873513 None:intergenic
TCTATCATTGAGAATGTTGA+TGG 0.419253 2:+5872785 MsaT006470.1:CDS
CTGTAGGCACACTTCTTGAC+GGG 0.420982 2:+5876522 MsaT006470.1:intron
TCTATTGATAGGAATCTTGA+TGG 0.423022 2:-5876140 None:intergenic
CCCATTGGTAATTGATGCTC+GGG 0.423428 2:-5873602 None:intergenic
ATAGACAGAGCTCATCGAAT+TGG 0.426036 2:+5878541 MsaT006470.1:CDS
CAATTCAACATGGCGGATGA+AGG 0.426400 2:+5870025 None:intergenic
TTTACTTGGTTCTGCGGTTG+AGG 0.428173 2:+5877840 MsaT006470.1:CDS
ATCACAGTCATCTTCATCAT+TGG 0.430047 2:-5873719 None:intergenic
CTTCTGAACCATCCATGATA+AGG 0.431633 2:-5875174 None:intergenic
CTTGTGCCTCCTGCCATGTA+AGG 0.434418 2:-5873844 None:intergenic
AGCCTGGTTTAGAGTTGTCT+TGG 0.435267 2:+5875937 MsaT006470.1:CDS
ATCCTTTGAAATGCCGTTTG+TGG 0.437778 2:+5872883 MsaT006470.1:CDS
ATCATGTTACGTCGGACAAA+AGG 0.440667 2:+5876208 MsaT006470.1:CDS
TTCATCTTTGAATTGTTACC+AGG 0.446733 2:+5872994 MsaT006470.1:CDS
AATAGATAGAGATTTGTCTA+AGG 0.447672 2:-5873578 None:intergenic
CTTTGGTTCGACTGCTTCCA+TGG 0.448873 2:-5875679 None:intergenic
TGATTATACCCAACCTTACA+TGG 0.449729 2:+5873831 MsaT006470.1:CDS
TGCCTCCTGCCATGTAAGGT+TGG 0.451717 2:-5873840 None:intergenic
TATATTGACTGTCGTGAAAT+GGG 0.455604 2:-5873192 None:intergenic
AAAATGTTTAGAGGCTTCCT+TGG 0.456953 2:+5876973 MsaT006470.1:CDS
GTCAGAAAATTGCCTTATCA+TGG 0.457889 2:+5875162 MsaT006470.1:intron
AGGAATTCTTGCTGATGATC+AGG 0.458452 2:+5875223 MsaT006470.1:CDS
AATTCGATGAGCTCTGTCTA+TGG 0.460553 2:-5878539 None:intergenic
AAACGGCAATGCAGCTTCCT+CGG 0.462396 2:+5876930 MsaT006470.1:CDS
CAAAGCTGAAGGGGATGAAA+TGG 0.463676 2:+5873336 MsaT006470.1:CDS
TCAGCAAACAGTGTAGGAAA+TGG 0.464280 2:-5870052 None:intergenic
TGAGAATGGTTTAGTGAAGA+AGG 0.464723 2:+5875472 MsaT006470.1:CDS
GCAGATCGACTTGTAGGTGC+AGG 0.465400 2:-5873769 None:intergenic
ACCGAGACAACAGCTTCTTC+AGG 0.465867 2:-5877661 None:intergenic
TCATCAATTGCATTCTGGAT+TGG 0.468026 2:-5876052 None:intergenic
TGTCAACCAGAGGCTGCTTA+GGG 0.468145 2:-5875766 None:intergenic
AGAAGATTGTGACATATTAA+GGG 0.468839 2:-5873803 None:intergenic
CAGCTTTGACATTAAATGAC+TGG 0.470302 2:-5873321 None:intergenic
AATGATGTGTACACGGCATA+AGG 0.471598 2:-5876109 None:intergenic
CCAGAACTGCCGGTAACAAC+AGG 0.473351 2:-5873031 None:intergenic
ATATATTGACTGTCGTGAAA+TGG 0.474281 2:-5873193 None:intergenic
TCTTTGAAGGCTGCTAGTCT+TGG 0.474320 2:+5878445 MsaT006470.1:CDS
GTTTAGAGTTGTCTTGGATG+AGG 0.475319 2:+5875943 MsaT006470.1:CDS
TGCATCTGTGAACATCTAAC+TGG 0.477039 2:+5877709 MsaT006470.1:CDS
TCATACTTGGCAAGCTCATA+GGG 0.478009 2:-5875704 None:intergenic
GGAACAGCCAGCAGTCCATC+TGG 0.480336 2:-5874366 None:intergenic
AACTTATTCAATTGTTAGCA+TGG 0.482405 2:+5875739 MsaT006470.1:CDS
TCCCATTGGTAATTGATGCT+CGG 0.482772 2:-5873603 None:intergenic
CGGCATTTCAAAGGATGTAC+AGG 0.484060 2:-5872876 None:intergenic
ACTGATACTACTAATATGAT+TGG 0.484968 2:+5873139 MsaT006470.1:CDS
TGCAAAGGGCAGGCCATCTG+CGG 0.485609 2:+5875559 MsaT006470.1:CDS
AATAAATTTCCAGGAAACAT+AGG 0.487886 2:+5873538 MsaT006470.1:CDS
ATGGAAATCTTCAGTTGAAA+CGG 0.487886 2:+5876913 MsaT006470.1:CDS
GAAGAGCAGGTCCGTGATGA+AGG 0.489005 2:-5872013 None:intergenic
TGAAACTTGCTATGCAGAAA+AGG 0.490223 2:+5872090 MsaT006470.1:CDS
GGAGGTCCCTAAGCAGCCTC+TGG 0.490920 2:+5875760 MsaT006470.1:CDS
ATCTGTGGAGTTGAGAAAAG+TGG 0.492453 2:+5876571 MsaT006470.1:CDS
GCATCTGCATTTGGAGAGGA+TGG 0.492731 2:+5879936 MsaT006470.1:CDS
GTTAACCGCAAAACTGTAAC+CGG 0.494594 2:-5878574 None:intergenic
GCCTCCTGCCATGTAAGGTT+GGG 0.495627 2:-5873839 None:intergenic
GCAAAGGGCAGGCCATCTGC+GGG 0.498064 2:+5875560 MsaT006470.1:CDS
GGTGGAGTAACTTCTGACTT+TGG 0.499643 2:-5874345 None:intergenic
GAGATGCCTTCTTACATTGT+GGG 0.499929 2:+5872130 MsaT006470.1:CDS
GAAAATTGCCTTATCATGGA+TGG 0.501323 2:+5875166 MsaT006470.1:intron
TTCTTCACTAAACCATTCTC+AGG 0.502258 2:-5875470 None:intergenic
GCTGTAGGCACACTTCTTGA+CGG 0.503803 2:+5876521 MsaT006470.1:intron
AACGGCAATGCAGCTTCCTC+GGG 0.504064 2:+5876931 MsaT006470.1:CDS
TATAATGTTGCAGAGTAGTC+CGG 0.506357 2:+5871576 MsaT006470.1:intron
GAAGTGTTCAGTGTGGCTTT+GGG 0.506587 2:-5877793 None:intergenic
GTCCTCTTGCAAAAGTAGCC+TGG 0.508131 2:+5875921 MsaT006470.1:CDS
ATTCAGTATAGAAGACTTGA+CGG 0.509035 2:+5878183 MsaT006470.1:CDS
GAACACTTCTATATCTGATC+CGG 0.510283 2:+5877807 MsaT006470.1:CDS
AGCACCATCTGCGCTTAGCT+CGG 0.510392 2:-5876018 None:intergenic
AGCGCAGATGGTGCTTGTCT+GGG 0.511057 2:+5876026 MsaT006470.1:CDS
GTCTCCGAGCTAAGCGCAGA+TGG 0.517097 2:+5876014 MsaT006470.1:CDS
TCAATACTTATACATTCGCT+TGG 0.517302 2:-5873664 None:intergenic
ATCTAGCATGAGAACGTGGC+AGG 0.517383 2:-5878485 None:intergenic
GATGACCCACTTCCTGAGAA+TGG 0.518471 2:+5875458 MsaT006470.1:CDS
CCCGAGCATCAATTACCAAT+GGG 0.519612 2:+5873602 MsaT006470.1:CDS
TACTCCACCAGATGGACTGC+TGG 0.520469 2:+5874359 MsaT006470.1:CDS
GTTCCATATATTTCTAGTGA+AGG 0.523222 2:+5873298 MsaT006470.1:CDS
GGCATGCATCTGAGCCCTAT+CGG 0.525362 2:+5873163 MsaT006470.1:CDS
ATACCTGCAGAGCTAAAATA+CGG 0.526888 2:-5878618 None:intergenic
CACTGTCGCAGAACACTAGT+TGG 0.528179 2:-5875599 None:intergenic
ATCATCAGCAAGAATTCCTC+CGG 0.528467 2:-5875219 None:intergenic
TCCTGAAGAAGCTGTTGTCT+CGG 0.529145 2:+5877660 MsaT006470.1:CDS
TCTTCAAATTTAGCATTACC+AGG 0.531061 2:-5873247 None:intergenic
TTGTCATCCTTCCAAAGACT+CGG 0.531331 2:-5872211 None:intergenic
TATGGCTTGATCTTCAGTTG+TGG 0.531334 2:-5878521 None:intergenic
TTATTGCACGTCTTAAGTAA+TGG 0.532061 2:-5875398 None:intergenic
AAAAGCTCTAATGATTCAGT+TGG 0.532462 2:+5878078 MsaT006470.1:CDS
CCACTGTAAGGCGAGTTTGA+CGG 0.534419 2:-5879968 None:intergenic
TGTCAAAACAACATCATACT+TGG 0.534844 2:-5875717 None:intergenic
TACTTTATTATGCAGCTCGT+CGG 0.535191 2:-5875624 None:intergenic
TCAATAGAAATCCATCAAAA+GGG 0.535724 2:+5876155 MsaT006470.1:CDS
ACGTTTCACCTGGTGAATCT+GGG 0.538203 2:+5871617 MsaT006470.1:CDS
CTCCACAGATTTAGGTGGCA+AGG 0.541084 2:-5876558 None:intergenic
TCATTTAATGTCAAAGCTGA+AGG 0.541111 2:+5873325 MsaT006470.1:CDS
ATCCACAAACGGCATTTCAA+AGG 0.542643 2:-5872885 None:intergenic
GATACTACTAATATGATTGG+TGG 0.543799 2:+5873142 MsaT006470.1:CDS
TAATTCTGATATCCAGAGGT+AGG 0.544131 2:-5873430 None:intergenic
CACAGTGACCCTACCTCTGA+AGG 0.545527 2:-5870148 None:intergenic
TGATTCAGTTGGTTCTCTTG+GGG 0.545568 2:+5878089 MsaT006470.1:CDS
TTGCTTTAATACTAAAGGAA+AGG 0.545826 2:+5875372 MsaT006470.1:CDS
CTTTGGGAAGTATGACATTG+TGG 0.549677 2:-5877946 None:intergenic
TGAAATGGGATCCGACCGAT+AGG 0.550636 2:-5873178 None:intergenic
ACAACAAGGGTTCCCGCAGA+TGG 0.552943 2:-5875572 None:intergenic
TGTATTACAAACCATGGACT+TGG 0.554072 2:+5875433 MsaT006470.1:CDS
ACAGATACCGCAGAGGGCCA+AGG 0.555555 2:-5876990 None:intergenic
AACTAGTGTTCTGCGACAGT+GGG 0.555888 2:+5875601 MsaT006470.1:CDS
TGCTAGTCTTGGTCTGAACA+TGG 0.556504 2:+5878456 MsaT006470.1:CDS
GTAACCTGGTGACGTAAAAG+AGG 0.558182 2:-5874387 None:intergenic
GAAAAGTGTATTACAAACCA+TGG 0.558940 2:+5875427 MsaT006470.1:CDS
CTTATCATGGATGGTTCAGA+AGG 0.560588 2:+5875175 MsaT006470.1:CDS
ACGTGATTTCTATTCCAAGC+TGG 0.560621 2:+5876610 MsaT006470.1:CDS
AATTTGTCAGTGCATGCAAA+GGG 0.560798 2:+5875545 MsaT006470.1:CDS
TCTTTCAATGAAGAATCCTC+CGG 0.561196 2:-5871595 None:intergenic
TGTCAGTGCATGCAAAGGGC+AGG 0.561301 2:+5875549 MsaT006470.1:CDS
ATCACAGAACTCAAGTTGCA+AGG 0.561357 2:+5875981 MsaT006470.1:CDS
ACAATTATACTGATTCCCAT+TGG 0.561396 2:-5873617 None:intergenic
CGATGATGAAAAGCTTGCAA+TGG 0.563887 2:+5870084 MsaT006470.1:CDS
AGGTCCGTGATGAAGGTCCC+TGG 0.564167 2:-5872006 None:intergenic
CACTAGTTGGACAAACAACA+AGG 0.565893 2:-5875586 None:intergenic
CTCTCCGTGCTTGTGTACCA+TGG 0.566087 2:+5875662 MsaT006470.1:CDS
TCGAATTGGACAGACTCGTC+CGG 0.568912 2:+5878555 MsaT006470.1:CDS
TTCGAACCCGAGTCTTTGGA+AGG 0.569765 2:+5872204 MsaT006470.1:CDS
TGAGATGCCTTCTTACATTG+TGG 0.570622 2:+5872129 MsaT006470.1:CDS
GCCCGAGCATCAATTACCAA+TGG 0.572437 2:+5873601 MsaT006470.1:CDS
ACAGCTTTGAAAGACACAAT+CGG 0.573202 2:+5872827 MsaT006470.1:CDS
TCATTGAAAGACGTTTCACC+TGG 0.573810 2:+5871607 MsaT006470.1:CDS
CTTGTGCCCACAATGTAAGA+AGG 0.575062 2:-5872136 None:intergenic
ACTTGCTATGCAGAAAAGGC+AGG 0.575936 2:+5872094 MsaT006470.1:CDS
TCATGTGCAGAGCTCTTCTA+GGG 0.576561 2:+5877972 MsaT006470.1:CDS
CTAGAGGTGAAACAATTACC+TGG 0.576931 2:+5873400 MsaT006470.1:CDS
TCACAGAACTCAAGTTGCAA+GGG 0.578682 2:+5875982 MsaT006470.1:CDS
GGCAGGAGGCACAAGACCAA+AGG 0.579098 2:+5873852 MsaT006470.1:CDS
GGTATGTCAACATCCACAAA+CGG 0.579434 2:-5872896 None:intergenic
TTATCATCTTTGTCAACCAG+AGG 0.582809 2:-5875776 None:intergenic
TGAAGATTGTGTTCCTTCAG+AGG 0.582862 2:+5870135 MsaT006470.1:CDS
TGCATCTGAGCCCTATCGGT+CGG 0.582979 2:+5873167 MsaT006470.1:CDS
CTTTCCAAAAGAAGTACTGA+GGG 0.583768 2:+5873694 MsaT006470.1:CDS
CCAGAGGTAGGGAAAATACC+AGG 0.584023 2:-5873418 None:intergenic
TTCATGTTCGAAGTCAAGCA+AGG 0.584671 2:-5871981 None:intergenic
AATTCTGATATCCAGAGGTA+GGG 0.584694 2:-5873429 None:intergenic
TAGTTCTAAAAGCAGCAAGA+AGG 0.586317 2:+5875865 MsaT006470.1:CDS
AGGAAAATAACCAGAACTGC+CGG 0.587224 2:-5873041 None:intergenic
GAAGCTGTTGTCTCGGTCTG+TGG 0.587319 2:+5877667 MsaT006470.1:CDS
ATCCTTGCCACCTAAATCTG+TGG 0.587694 2:+5876556 MsaT006470.1:CDS
CACTGACAAATTAGCACTTG+TGG 0.588933 2:-5875534 None:intergenic
TGTCATCCTTCCAAAGACTC+GGG 0.589617 2:-5872210 None:intergenic
TAATGACAATGCTGGTCTAG+AGG 0.593643 2:+5873384 MsaT006470.1:CDS
TTGTAACGCTTGACAAGCAG+AGG 0.594354 2:-5876878 None:intergenic
CTCAACTCCACAGATTTAGG+TGG 0.595904 2:-5876563 None:intergenic
CAAGGCTGAGTCTTAGAACA+AGG 0.597015 2:-5877871 None:intergenic
TATACCCAACCTTACATGGC+AGG 0.597086 2:+5873835 MsaT006470.1:CDS
TTCTCATGCTAGATCTATGG+TGG 0.597224 2:+5878494 MsaT006470.1:CDS
TGACTTCGAACATGAAAACC+AGG 0.597999 2:+5871988 MsaT006470.1:CDS
TGGGTCATCATCCAAGTCCA+TGG 0.598418 2:-5875444 None:intergenic
TAATTTGTCAGTGCATGCAA+AGG 0.598421 2:+5875544 MsaT006470.1:CDS
CAAGCATGTGGTAGATGATG+TGG 0.598489 2:+5872246 MsaT006470.1:CDS
TGATAGGAATATGCTGATGC+TGG 0.598926 2:+5876788 MsaT006470.1:intron
GCTGAATTTCCAAAATGTGT+AGG 0.600127 2:-5872917 None:intergenic
CATTTAATGTCAAAGCTGAA+GGG 0.600769 2:+5873326 MsaT006470.1:CDS
TTTGAACAGCATGATGCTTG+AGG 0.601520 2:+5875889 MsaT006470.1:CDS
TAACAGCTTTATCTCTAGCG+AGG 0.602141 2:-5878218 None:intergenic
GGTAATGCTAAATTTGAAGA+CGG 0.606113 2:+5873250 MsaT006470.1:CDS
TCATCGTCAGCAAACAGTGT+AGG 0.609474 2:-5870058 None:intergenic
TCATCTTTGAATTGTTACCA+GGG 0.612325 2:+5872995 MsaT006470.1:CDS
TGATCATTTACTTGGTTCTG+CGG 0.613573 2:+5877834 MsaT006470.1:CDS
CCAAGTAAATGATCACAAGC+CGG 0.614767 2:-5877826 None:intergenic
TCAGAAGTTACTCCACCAGA+TGG 0.616360 2:+5874351 MsaT006470.1:CDS
ACTAAAATCACTAGGAACAT+CGG 0.618407 2:-5872963 None:intergenic
TAGTAGCCACTAAAATCACT+AGG 0.619773 2:-5872971 None:intergenic
AGAGCTGGTGAGGAATATGA+AGG 0.624629 2:+5873096 MsaT006470.1:CDS
TCATGGATCCCAGATTCACC+AGG 0.625159 2:-5871625 None:intergenic
CCGTCAAACTCGCCTTACAG+TGG 0.631830 2:+5879968 MsaT006470.1:CDS
CTAAACCATTCTCAGGAAGT+GGG 0.633411 2:-5875463 None:intergenic
TGATTTCTATTCCAAGCTGG+AGG 0.634043 2:+5876613 MsaT006470.1:CDS
CAGATCGACTTGTAGGTGCA+GGG 0.636342 2:-5873768 None:intergenic
GAGGCTTCCTTGGCCCTCTG+CGG 0.638494 2:+5876983 MsaT006470.1:CDS
ATTTAATGTCAAAGCTGAAG+GGG 0.638524 2:+5873327 MsaT006470.1:CDS
TACATTACAGATACCGCAGA+GGG 0.641101 2:-5876996 None:intergenic
ATCCAAGACAACTCTAAACC+AGG 0.641250 2:-5875939 None:intergenic
ACAGCCAGCAGTCCATCTGG+TGG 0.645061 2:-5874363 None:intergenic
ACGTGAATCAGCCTCCAGCT+TGG 0.646624 2:-5876624 None:intergenic
GAAATGGGATCCGACCGATA+GGG 0.646679 2:-5873177 None:intergenic
GCTTCCATGGTACACAAGCA+CGG 0.648542 2:-5875666 None:intergenic
CTGTGAACATCTAACTGGTG+AGG 0.649654 2:+5877714 MsaT006470.1:CDS
ATCGTAATTCTGATATCCAG+AGG 0.650145 2:-5873434 None:intergenic
TTTGGAGAGGATGGAACTAG+TGG 0.651521 2:+5879945 MsaT006470.1:CDS
TTGCACGTCTTAAGTAATGG+AGG 0.655918 2:-5875395 None:intergenic
TTATAGCCAAATCAAGCATG+TGG 0.656101 2:+5872234 MsaT006470.1:CDS
GCAGCAAAAGAAGAGAACAA+TGG 0.658011 2:+5879911 MsaT006470.1:intron
AAAACCAGGGACCTTCATCA+CGG 0.661295 2:+5872002 MsaT006470.1:CDS
ACTTTCCAAAAGAAGTACTG+AGG 0.663533 2:+5873693 MsaT006470.1:CDS
CAGGTCTAACATCTATACCC+TGG 0.669293 2:-5873012 None:intergenic
TCAAGTTTATACTGTTCCGG+AGG 0.669465 2:+5875203 MsaT006470.1:CDS
AACTCGACTTAACATGTCTG+CGG 0.671534 2:+5877765 MsaT006470.1:CDS
AGAACAGAATGATGTGTACA+CGG 0.673282 2:-5876116 None:intergenic
ACCCAACCTTACATGGCAGG+AGG 0.676228 2:+5873838 MsaT006470.1:CDS
GGTTGCATCTGCATTTGGAG+AGG 0.681651 2:+5879932 MsaT006470.1:CDS
TTATTCAATTGTTAGCATGG+AGG 0.684044 2:+5875742 MsaT006470.1:CDS
TGTAGGCACACTTCTTGACG+GGG 0.687352 2:+5876523 MsaT006470.1:intron
AACGCTTGACAAGCAGAGGG+TGG 0.689868 2:-5876874 None:intergenic
CAAGTTGCAAGGGCTTGTTG+GGG 0.693407 2:+5875992 MsaT006470.1:CDS
TAGTCTTGGTCTGAACATGG+TGG 0.702583 2:+5878459 MsaT006470.1:CDS
ATAGATCTAGCATGAGAACG+TGG 0.709917 2:-5878489 None:intergenic
GACTTCGAACATGAAAACCA+GGG 0.711049 2:+5871989 MsaT006470.1:CDS
AATGTTGCAGAGTAGTCCGG+AGG 0.714192 2:+5871579 MsaT006470.1:intron
TGTAACGCTTGACAAGCAGA+GGG 0.716009 2:-5876877 None:intergenic
TAAAGACGATCATGTTACGT+CGG 0.717207 2:+5876200 MsaT006470.1:CDS
ACTAGTTGGACAAACAACAA+GGG 0.740281 2:-5875585 None:intergenic
AGATATAGAAGTGTTCAGTG+TGG 0.742861 2:-5877800 None:intergenic
TGATGCAATTGTAACAACTG+AGG 0.759146 2:+5873477 MsaT006470.1:CDS
ATACATTACAGATACCGCAG+AGG 0.763123 2:-5876997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 5870034 5880019 5870034 ID=MsaG006470
Chr2 mRNA 5870034 5880019 5870034 ID=MsaT006470.1;Parent=MsaG006470
Chr2 exon 5870034 5870156 5870034 ID=MsaT006470.1.exon1;Parent=MsaT006470.1
Chr2 CDS 5870034 5870156 5870034 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5871589 5871667 5871589 ID=MsaT006470.1.exon2;Parent=MsaT006470.1
Chr2 CDS 5871589 5871667 5871589 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5871975 5872277 5871975 ID=MsaT006470.1.exon3;Parent=MsaT006470.1
Chr2 CDS 5871975 5872277 5871975 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5872771 5873912 5872771 ID=MsaT006470.1.exon4;Parent=MsaT006470.1
Chr2 CDS 5872771 5873912 5872771 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5874333 5874404 5874333 ID=MsaT006470.1.exon5;Parent=MsaT006470.1
Chr2 CDS 5874333 5874404 5874333 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5875167 5875244 5875167 ID=MsaT006470.1.exon6;Parent=MsaT006470.1
Chr2 CDS 5875167 5875244 5875167 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5875347 5876229 5875347 ID=MsaT006470.1.exon7;Parent=MsaT006470.1
Chr2 CDS 5875347 5876229 5875347 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5876528 5876658 5876528 ID=MsaT006470.1.exon8;Parent=MsaT006470.1
Chr2 CDS 5876528 5876658 5876528 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5876794 5877015 5876794 ID=MsaT006470.1.exon9;Parent=MsaT006470.1
Chr2 CDS 5876794 5877015 5876794 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5877655 5878263 5877655 ID=MsaT006470.1.exon10;Parent=MsaT006470.1
Chr2 CDS 5877655 5878263 5877655 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5878427 5878636 5878427 ID=MsaT006470.1.exon11;Parent=MsaT006470.1
Chr2 CDS 5878427 5878636 5878427 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Chr2 exon 5879915 5880019 5879915 ID=MsaT006470.1.exon12;Parent=MsaT006470.1
Chr2 CDS 5879915 5880019 5879915 ID=cds.MsaT006470.1;Parent=MsaT006470.1
Gene Sequence

>MsaT006470.1

ATGGCGGATGAAGGATTTCCATTTCCTACACTGTTTGCTGACGATGATTCCGATGATGAAAAGCTTGCAATGGATATTGAATCGTTTCTCAGCGTTCTTGATGAAGATTGTGTTCCTTCAGAGAGTAGTCCGGAGGATTCTTCATTGAAAGACGTTTCACCTGGTGAATCTGGGATCCATGATAATTTTTTACTTCAAAATGAGAATTCCTTGCTTGACTTCGAACATGAAAACCAGGGACCTTCATCACGGACCTGCTCTTCCCCAAATGTTTTTGCTGGTGGTTACAGGGACTCGTTCTCTGTTGCTGAAAGTGATGAAACTTGCTATGCAGAAAAGGCAGGAGTTTCTGAACATGAGATGCCTTCTTACATTGTGGGCACAAGTTTTGCTGAGGCAAATTCAAATACTGTAACTCTTTGTGGAGATAATTCGAACCCGAGTCTTTGGAAGGATGACAATTATAGCCAAATCAAGCATGTGGTAGATGATGTGGAATCTGAACATGCTTCACACAGCTCTATCATTGAGAATGTTGATGGAACTTTTGAAGATTATGGAACAGCTTTGAAAGACACAATCGGAGTTTCTAGGCAGCCAGAAAATGACTCCTGTACATCCTTTGAAATGCCGTTTGTGGATGTTGACATACCTACACATTTTGGAAATTCAGCTGATTCTATTTTTTGTCAAGGTTCCGATGTTCCTAGTGATTTTAGTGGCTACTATTCATCTTTGAATTGTTACCAGGGTATAGATGTTAGACCTGTTGTTACCGGCAGTTCTGGTTATTTTCCTAATGGTGTTGGTTCTGAATTCTGGAAAAATGAAGAGCTGGTGAGGAATATGAAGGTTGAAAAAATGGAATGCTTAACTGATACTACTAATATGATTGGTGGCATGCATCTGAGCCCTATCGGTCGGATCCCATTTCACGACAGTCAATATATGCCAGTAAATAATGAATATCCTTCATTTTTTCCTGGTAATGCTAAATTTGAAGACGGTGAATCAGTGCAACAATCATCTTGTGTTCCATATATTTCTAGTGAAGGCCAGTCATTTAATGTCAAAGCTGAAGGGGATGAAATGGTTATGCCTTACCAAAATACTTTTCATAATGACAATGCTGGTCTAGAGGTGAAACAATTACCTGGTATTTTCCCTACCTCTGGATATCAGAATTACGATTTTTTCAAGGTGGAGGATAGTGATGCAATTGTAACAACTGAGGATGCCAATTATTACCAAGATCTTATTGGTGAAACTGCTAATAAATTTCCAGGAAACATAGGAAATTTGAATTTCAGATCCTTAGACAAATCTCTATCTATTGCCCGAGCATCAATTACCAATGGGAATCAGTATAATTGTAGTATGAGTGAACTAGAGAGTAAACCAAGCGAATGTATAAGTATTGATTCTCAACTTTCCAAAAGAAGTACTGAGGGATCCAATGATGAAGATGACTGTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTACAAGTCGATCTGCCGAATTCAATTCCCTTAATATGTCACAATCTTCTAGATTTGATTATACCCAACCTTACATGGCAGGAGGCACAAGACCAAAGGCACGCGACGAGCAGTACATATTACGAGCTGCTTTGCAGGATATAGCTCAGCCAAAGTCAGAAGTTACTCCACCAGATGGACTGCTGGCTGTTCCTCTTTTACGTCACCAGAAAATTGCCTTATCATGGATGGTTCAGAAGGAAACATCAAGTTTATACTGTTCCGGAGGAATTCTTGCTGATGATCAGGGTCTTGGGAAAACAGTGTCAACTATTGCTTTAATACTAAAGGAAAGGCCTCCATTACTTAAGACGTGCAATAATGACCAGAAAAGTGTATTACAAACCATGGACTTGGATGATGACCCACTTCCTGAGAATGGTTTAGTGAAGAAGGAATCTACTGTGTGTCAAGATACATCCAATAGAAATGCAACCACAAGTGCTAATTTGTCAGTGCATGCAAAGGGCAGGCCATCTGCGGGAACCCTTGTTGTTTGTCCAACTAGTGTTCTGCGACAGTGGGCCGACGAGCTGCATAATAAAGTAACCTGCAAAGCAAATCTCTCCGTGCTTGTGTACCATGGAAGCAGTCGAACCAAAGATCCCTATGAGCTTGCCAAGTATGATGTTGTTTTGACAACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAGCCTCTGGTTGACAAAGATGATAAAGATGACAAAGAAAAAGGAATTTATGAAGATCATGCTGTGCCGAATAGGAAAAGAAAATGCCCTCCTAGTTCTAAAAGCAGCAAGAAGGCTTTGAACAGCATGATGCTTGAGGCTGCTGCACGTCCTCTTGCAAAAGTAGCCTGGTTTAGAGTTGTCTTGGATGAGGCCCAAAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCTTGTTGGGGTCTCCGAGCTAAGCGCAGATGGTGCTTGTCTGGGACTCCAATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTCTAAGATATGATCCTTATGCCGTGTACACATCATTCTGTTCTACCATCAAGATTCCTATCAATAGAAATCCATCAAAAGGGTATAGAAAGCTACAAGCTGTCTTAAAGACGATCATGTTACGTCGGACAAAAGGCACACTTCTTGACGGGGAACCTATTATATCCTTGCCACCTAAATCTGTGGAGTTGAGAAAAGTGGAATTTTCACAGGAGGAACGTGATTTCTATTCCAAGCTGGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGTACTGTGAAGCAAAACTATGTGAACATTTTATTGATGCTTTTGCGCCTTAGACAAGCTTGCGACCACCCTCTGCTTGTCAAGCGTTACAATTCTACTACTCTATGGAAATCTTCAGTTGAAACGGCAATGCAGCTTCCTCGGGAAAAACAGTTATTTCTTTTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGCGGTATCTGTAATGATGCTCCTGAAGAAGCTGTTGTCTCGGTCTGTGGTCATGTTTTCTGTAATCAGTGCATCTGTGAACATCTAACTGGTGAGGACAATCAGTGCCCTGCTACAAACTGCAAAACTCGACTTAACATGTCTGCGGTCTTTCCCAAAGCCACACTGAACACTTCTATATCTGATCCGGCTTGTGATCATTTACTTGGTTCTGCGGTTGAGGATTCTGAACCTTGTTCTAAGACTCAGCCTTGTGATTCTTCAAAAATAAGGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGTCATACTTCCCAAAGAAGTCATGTGCAGAGCTCTTCTAGGGAAAGTTCTGATTGCAGCTCCACTTCTGCCGATAATGGAAAATCCATTAGTGATACTCCAGAAAAGAAAGCCGTGTTTATGGAGAAAAGCTCTAATGATTCAGTTGGTTCTCTTGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACTGGCATGCTAGATTTACTTGAAGCATGTCTTAAGGATTCTTCAATTCAGTATAGAAGACTTGACGGAACAATGTCAGTCCTCGCTAGAGATAAAGCTGTTAAAGATTTTAACACACTCCCTGAGGTATCTGTTATGATAATGTCTTTGAAGGCTGCTAGTCTTGGTCTGAACATGGTGGCAGCCTGCCACGTTCTCATGCTAGATCTATGGTGGAATCCCACAACTGAAGATCAAGCCATAGACAGAGCTCATCGAATTGGACAGACTCGTCCGGTTACAGTTTTGCGGTTAACTGTCAAAGATACAGTTGAAGACCGTATTTTAGCTCTGCAGCAAAAGAAGAGAACAATGGTTGCATCTGCATTTGGAGAGGATGGAACTAGTGGCCGTCAAACTCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA
Protein sequence

>MsaT006470.1

MADEGFPFPTLFADDDSDDEKLAMDIESFLSVLDEDCVPSESSPEDSSLKDVSPGESGIHDNFLLQNENSLLDFEHENQGPSSRTCSSPNVFAGGYRDSFSVAESDETCYAEKAGVSEHEMPSYIVGTSFAEANSNTVTLCGDNSNPSLWKDDNYSQIKHVVDDVESEHASHSSIIENVDGTFEDYGTALKDTIGVSRQPENDSCTSFEMPFVDVDIPTHFGNSADSIFCQGSDVPSDFSGYYSSLNCYQGIDVRPVVTGSSGYFPNGVGSEFWKNEELVRNMKVEKMECLTDTTNMIGGMHLSPIGRIPFHDSQYMPVNNEYPSFFPGNAKFEDGESVQQSSCVPYISSEGQSFNVKAEGDEMVMPYQNTFHNDNAGLEVKQLPGIFPTSGYQNYDFFKVEDSDAIVTTEDANYYQDLIGETANKFPGNIGNLNFRSLDKSLSIARASITNGNQYNCSMSELESKPSECISIDSQLSKRSTEGSNDEDDCDVCIIEDISHPAPTSRSAEFNSLNMSQSSRFDYTQPYMAGGTRPKARDEQYILRAALQDIAQPKSEVTPPDGLLAVPLLRHQKIALSWMVQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCNNDQKSVLQTMDLDDDPLPENGLVKKESTVCQDTSNRNATTSANLSVHAKGRPSAGTLVVCPTSVLRQWADELHNKVTCKANLSVLVYHGSSRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDKDDKEKGIYEDHAVPNRKRKCPPSSKSSKKALNSMMLEAAARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKSVELRKVEFSQEERDFYSKLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSTTLWKSSVETAMQLPREKQLFLLKCLEASLALCGICNDAPEEAVVSVCGHVFCNQCICEHLTGEDNQCPATNCKTRLNMSAVFPKATLNTSISDPACDHLLGSAVEDSEPCSKTQPCDSSKIRAALEVLQSLSKPQCHTSQRSHVQSSSRESSDCSSTSADNGKSISDTPEKKAVFMEKSSNDSVGSLGEKAIVFSQWTGMLDLLEACLKDSSIQYRRLDGTMSVLARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRTMVASAFGEDGTSGRQTRLTVDDLKYLFMM*