AlfalfaGEDB | MsaG006498

M. sativa ssp. caerulea / MsaG006498

KEGG: -
GO: -
PFAM: PF02701.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006498	XP_003593557.1	91.336	277	20	2	1	276	1	274	6.80e-170	481

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006498	sp\|Q9FZA4\|DOF14_ARATH	65.060	83	28	1	20	101	1	83	3.66e-28	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006498	tr\|G7IPR3\|G7IPR3_MEDTR	91.336	277	20	2	1	276	1	274	3.25e-170	481

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006498	TF	C2C2-Dof

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006498	MtrunA17_Chr2g0282051	91.336	277	20	2	1	276	1	274	6.26e-174	481
MsaG006498	MtrunA17_Chr4g0047761	54.949	293	97	10	12	276	35	320	7.29e-81	246
MsaG006498	MtrunA17_Chr3g0127201	66.197	71	23	1	30	99	11	81	6.89e-29	111
MsaG006498	MtrunA17_Chr4g0047001	63.415	82	29	1	48	128	57	138	1.04e-28	112
MsaG006498	MtrunA17_Chr2g0328021	46.212	132	58	4	46	176	62	181	1.25e-28	110
MsaG006498	MtrunA17_Chr8g0374251	59.036	83	31	2	39	120	63	143	1.59e-28	111
MsaG006498	MtrunA17_Chr8g0374111	58.750	80	27	3	44	121	27	102	5.09e-27	105
MsaG006498	MtrunA17_Chr7g0223311	67.568	74	19	2	38	106	69	142	6.50e-27	107
MsaG006498	MtrunA17_Chr8g0346551	58.108	74	30	1	28	100	6	79	9.41e-27	105
MsaG006498	MtrunA17_Chr2g0326001	77.193	57	12	1	44	99	38	94	1.42e-26	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006498	AT1G28310.1	65.060	83	28	1	20	101	1	83	3.72e-29	112
MsaG006498	AT1G28310.2	65.060	83	28	1	20	101	25	107	6.58e-29	112
MsaG006498	AT5G66940.1	60.274	73	27	1	42	112	28	100	9.70e-28	107
MsaG006498	AT5G60850.1	59.770	87	31	2	34	116	36	122	1.88e-27	108
MsaG006498	AT5G60200.1	57.447	94	32	3	19	111	32	118	2.76e-27	106
MsaG006498	AT3G55370.2	66.667	66	21	1	45	109	75	140	2.78e-27	108
MsaG006498	AT3G55370.1	66.667	66	21	1	45	109	75	140	2.93e-27	108
MsaG006498	AT3G55370.3	66.667	66	21	1	45	109	120	185	3.06e-27	108
MsaG006498	AT1G51700.1	38.125	160	86	4	33	179	16	175	3.80e-27	104
MsaG006498	AT3G61850.2	75.439	57	13	1	44	99	60	116	1.95e-26	105

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Find 62 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAGCTTGAGTTTGAGAA+TGG	0.415643	2:-6243062	None:intergenic
AACAATGAAGAATTTGGTAT+TGG	0.395188	2:+6242981	MsaT006498.1:CDS
AACTGATCTAAATGTTCCTT+GGG	0.432000	2:+6243274	MsaT006498.1:CDS
AAGAGACATTGGACTAAAGG+TGG	0.661565	2:+6242717	MsaT006498.1:CDS
AAGAGCTTGAGTTTGAGAAT+GGG	0.526214	2:-6243061	None:intergenic
ACCTGCAACAAGTAGTGGCA+TGG	0.573077	2:+6243205	MsaT006498.1:CDS
ACTCTCAGGAATGTTCCTGT+TGG	0.606251	2:+6242741	MsaT006498.1:CDS
AGAATGGGAATATAAAGCTT+TGG	0.413450	2:-6243046	None:intergenic
AGCTCTTTAAGATCATCCAA+TGG	0.640870	2:+6243077	MsaT006498.1:CDS
AGTACCAAAGATCAATCAGG+TGG	0.670824	2:+6242957	MsaT006498.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	6242489	6243319	6242489	ID=MsaG006498
Chr2	mRNA	6242489	6243319	6242489	ID=MsaT006498.1;Parent=MsaG006498
Chr2	exon	6242489	6243319	6242489	ID=MsaT006498.1.exon1;Parent=MsaT006498.1
Chr2	CDS	6242489	6243319	6242489	ID=cds.MsaT006498.1;Parent=MsaT006498.1

Gene Sequence

>MsaT006498.1

ATGGGCTTGAGTTCTAAGCAAGTTTCTAGTAGAGGTGTTGATTGGAACCAAACCTTGTTGCAAGATCAAAACATGGAACTTCCAAAGACTCCTCCCATGAGAAAACAACAGCAACAAAATCAGCAACTAGAGGCAGTGAATTGTCCAAGATGTGACTCTACAAATACCAAATTTTGTTACTACAACAACTATAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGCAAGAGACATTGGACTAAAGGTGGTACTCTCAGGAATGTTCCTGTTGGTGGTGTTAGGAAGAATAAGAGAGTCAAGATATCAACTTCTCCAACTTCTATTAGCATCACCTCAAAAACTACTATTAGCACCTCCTCCACCACCACCTCAAATGACAACAGGCAGAATAAAAAAACCACACCTTCTTCTATGCATGAATCTATTATTCATCCACCATCTTTGTTGCCACCACAGAATCTAATGAGTACCAAAGATCAATCAGGTGGTAACAATGAAGAATTTGGTATTGGTAATGACATGTTTCTGAGTTCATCTATGCCTTTTCCTCAAAACCAAAGCTTTATATTCCCATTCTCAAACTCAAGCTCTTTAAGATCATCCAATGGATATAACTATGGTGAAGAGTTTAAAGTAATGGAGGAGTCAACTATTAACAACAGTGCAATGCCAAGCACTAGTGGTAGTGGCACTATTACACATCCATGGGAGATACCTGCAACAAGTAGTGGCATGGATATGTCAAACTATTGGAGTTGGGAGGATATTGATTCTTTGGTCTCAACTGATCTAAATGTTCCTTGGGATGATTCTGATATCAAACCTTGA

Protein sequence

>MsaT006498.1

MGLSSKQVSSRGVDWNQTLLQDQNMELPKTPPMRKQQQQNQQLEAVNCPRCDSTNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGVRKNKRVKISTSPTSISITSKTTISTSSTTTSNDNRQNKKTTPSSMHESIIHPPSLLPPQNLMSTKDQSGGNNEEFGIGNDMFLSSSMPFPQNQSFIFPFSNSSSLRSSNGYNYGEEFKVMEESTINNSAMPSTSGSGTITHPWEIPATSSGMDMSNYWSWEDIDSLVSTDLNVPWDDSDIKP*