AlfalfaGEDB | MsaG006518

M. sativa ssp. caerulea / MsaG006518

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
PFAM: PF00139.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006518	XP_003593578.1	97.329	599	15	1	1	599	90	687	0.0	1201

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006518	sp\|Q9S9U1\|LRK71_ARATH	60.239	586	220	8	1	580	88	666	0.0	695

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006518	tr\|G7IPT4\|G7IPT4_MEDTR	97.329	599	15	1	1	599	90	687	0.0	1201

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000180	MsaG006518	0.801551	1.431158e-48	2.004005e-46
MsaG000382	MsaG006518	0.836439	1.710718e-56	5.983408e-54
MsaG000683	MsaG006518	0.825793	6.862624e-54	1.764551e-51
MsaG001086	MsaG006518	0.815474	1.571549e-51	3.074576e-49
MsaG001200	MsaG006518	0.816057	1.167141e-51	2.317386e-49
MsaG001279	MsaG006518	0.803099	6.893150e-49	1.000033e-46
MsaG001654	MsaG006518	0.857868	2.373824e-62	1.703434e-59
MsaG001672	MsaG006518	0.805708	1.982504e-49	3.055567e-47
MsaG002013	MsaG006518	0.803508	5.675758e-49	8.312360e-47
MsaG003187	MsaG006518	0.835501	2.951159e-56	1.003464e-53

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006518	MtrunA17_Chr2g0282271	97.329	599	15	1	1	599	90	687	0.0	1201
MsaG006518	MtrunA17_Chr2g0324171	55.766	581	245	6	1	580	91	660	0.0	652
MsaG006518	MtrunA17_Chr2g0324471	54.545	605	253	12	1	599	111	699	0.0	633
MsaG006518	MtrunA17_Chr2g0324481	53.519	540	239	5	1	535	88	620	0.0	575
MsaG006518	MtrunA17_Chr7g0239321	45.624	537	265	12	7	534	93	611	1.86e-151	451
MsaG006518	MtrunA17_Chr7g0239381	44.796	538	267	14	10	538	102	618	1.56e-150	449
MsaG006518	MtrunA17_Chr7g0239371	44.669	544	272	13	3	538	92	614	3.22e-150	448
MsaG006518	MtrunA17_Chr7g0239211	44.199	543	267	11	7	534	93	614	2.61e-148	443
MsaG006518	MtrunA17_Chr7g0239331	45.971	546	263	13	1	534	87	612	2.84e-147	441
MsaG006518	MtrunA17_Chr7g0239361	44.108	594	286	15	8	588	108	668	1.64e-146	439

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006518	AT4G04960.1	60.239	586	220	8	1	580	88	666	0.0	695
MsaG006518	AT4G28350.1	54.036	607	255	11	1	599	91	681	0.0	642
MsaG006518	AT4G04960.2	64.050	484	166	4	1	481	88	566	0.0	622
MsaG006518	AT3G53810.1	43.462	543	273	14	7	535	99	621	1.20e-147	442
MsaG006518	AT3G55550.1	44.790	547	269	14	1	534	92	618	1.33e-146	439
MsaG006518	AT2G37710.1	41.513	595	298	14	8	589	100	657	7.66e-146	437
MsaG006518	AT4G02410.1	43.831	543	276	15	7	535	101	628	1.23e-145	437
MsaG006518	AT4G29050.1	42.937	538	286	11	6	535	94	618	2.41e-145	436
MsaG006518	AT4G29050.2	42.937	538	286	11	6	535	108	632	5.62e-145	435
MsaG006518	AT4G02420.1	43.599	539	275	13	10	535	101	623	3.90e-143	430

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Find 113 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGAAGTTTAGACAAA+AGG	0.409116	2:+6415223	MsaT006518.1:CDS
AAAATGTGATTGGTGTTGGA+GGG	0.657982	2:+6415001	MsaT006518.1:CDS
AAATCCTGCAACAAACCCTT+TGG	0.447663	2:-6414803	None:intergenic
AAATGGAAGTTTAGACAAAA+GGG	0.419667	2:+6415224	MsaT006518.1:CDS
AACGTTACTATAGCAAAATT+GGG	0.420509	2:+6414559	MsaT006518.1:CDS
AAGATTGGGAGTTAGAGTAT+TGG	0.578677	2:+6414923	MsaT006518.1:CDS
AAGGATATGAATGGCAAGTT+AGG	0.384828	2:+6415396	MsaT006518.1:CDS
AAGGTAATCCACTAGTAACA+AGG	0.646277	2:-6414747	None:intergenic
AAGTCCAAAGGGTTTGTTGC+AGG	0.355989	2:+6414799	MsaT006518.1:CDS
AATGGCAAGTTAGGTGATTT+TGG	0.241935	2:+6415405	MsaT006518.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	6414199	6415998	6414199	ID=MsaG006518
Chr2	mRNA	6414199	6415998	6414199	ID=MsaT006518.1;Parent=MsaG006518
Chr2	exon	6414199	6415998	6414199	ID=MsaT006518.1.exon1;Parent=MsaT006518.1
Chr2	CDS	6414199	6415998	6414199	ID=cds.MsaT006518.1;Parent=MsaT006518.1

Gene Sequence

>MsaT006518.1

ATGGCACCTTTTGAAGATACTCTTCCTGGTCATGGCTTAGTTTTCATCTTCACACCTGTTAAAGGCATAGAAGGTACAAGTTCAGCTCAACATCTTGGTCTTTTTAATCTTTCAAACAATGGAAATTCCAACAACCATGTTTTTGGTGTTGAGTTTGATGTTTTTATGAACCAAGAGTTTAATGATATCAATGCCAACCATGTTGGAATTGACATAAACTCTCTTAATTCTGTTGTTTCACATGATGTTGGGTTTTGGGTTGATGATGAGAAAAGTGAAAAAGATCAGATTTTTGAGAAATTGGTGTTGAATAATGGTGAAAATTATCAAGTTTGGATTGATTATGAAGATTCTTTGATTAACGTTACTATAGCAAAATTGGGTATGAAAAGACCTGTTAGGCCTTTATTGAATGTTTCTCTCAATTTATCTGAAGTTTTTGAAGATGATATGTTTGTTGGATTTACTAGCTCAACTGGGCAATTAGTTGAAAGTCACAAGATTTTAGCTTGGAGTTTTAGCAATGCAAATTTTTCATTGAGTGATGACCTTGTTACTAGTGGATTACCTTCTTTTGTTCTTCCAAAAGATTCAATTTTTAAGTCCAAAGGGTTTGTTGCAGGATTTAGTGTAGGAGTTTTCTTTATTATCTGTGTTTTGGTTTTGTTGGTACTGTTTTTGATTCAAAGGAAGAGAAAAATAGACAAGAAGAGAAGTGAAATGGAAGATTGGGAGTTAGAGTATTGGCCACACAGAATGACATATGAAGAAATTGAAGCTTCTACAAAAGGTTTCTCTGAGGAAAATGTGATTGGTGTTGGAGGGAATGGGAAAGTCTATAAGGGTGTTTTAAGAGGAGGAGTAGTGACTGCTGTGAAACACATTTCTCATGAGAATAATGGTATGAGAGAATTTCTTGCAGAAGTTTCAACTCTTGGGAGGTTAAAGCAAAGGAATTTAGTAGGGTTAAGAGGTTGGTGTAAGAAAGATGCTGGAAATTTCTTATTAGTTTATGAACATATGGAAAATGGAAGTTTAGACAAAAGGGTGTTTGATTGTGATGAGAGCAAGATGTTAAACTATGAAGATAGAATAAGGATTATTAAAGATGTAGCTCATGCTGTTTTGTATTTGCATGAAGGGTGGGAAGTAAAAGTGGTGCATAGGGACATTAAGGCAAGCAATGTTTTACTTGATAAGGATATGAATGGCAAGTTAGGTGATTTTGGTTTAGCTAGAATGCAAGATCATGGTCAGGTTGCGAGCACAACAAAATTGGTTGGCACGGTCGGTTACATGGCTCCTGAAGTGATCAAAACTGGAAGAACTTCGACTCATACCGATGTTTACATGTTTGGTATCTTGATTTTAGAGGTTATGTGTGGAAGGAGACCATTAGAAGAAGGTAAACCATCTTTGGTGGAGTTTGTTTGGAAACTTATGGTACAAGGGGAACTTGTGAATGCACTTGATCAAAGGCTAAGGGATAAAGGTGAATTTAGTTTGCAAGAATTGGAGAGAGTGCTACATTTGGGTTTGTTGTGTGCATATCCTGAACCAAAATCCAGGCCAACAATGAGACAAGTGGTGAATATTTTAGAGGGGAAGAATGAAGGAGTTGAAGAGTCAGAGATTGAGAATATGGATAGTTATTTGCTCCAACAATTGAAATCAAGGGATATTTTGGCTGAGTATTCTCAGTATTTTAGCTATGCATCACATCCAACTTTTCAAGATATTGGTGCTCACTTTTCCTCAACATCTTTCACTTGGTCTGGATCTTTAGTTCAGGGTAGGTGA

Protein sequence

>MsaT006518.1

MAPFEDTLPGHGLVFIFTPVKGIEGTSSAQHLGLFNLSNNGNSNNHVFGVEFDVFMNQEFNDINANHVGIDINSLNSVVSHDVGFWVDDEKSEKDQIFEKLVLNNGENYQVWIDYEDSLINVTIAKLGMKRPVRPLLNVSLNLSEVFEDDMFVGFTSSTGQLVESHKILAWSFSNANFSLSDDLVTSGLPSFVLPKDSIFKSKGFVAGFSVGVFFIICVLVLLVLFLIQRKRKIDKKRSEMEDWELEYWPHRMTYEEIEASTKGFSEENVIGVGGNGKVYKGVLRGGVVTAVKHISHENNGMREFLAEVSTLGRLKQRNLVGLRGWCKKDAGNFLLVYEHMENGSLDKRVFDCDESKMLNYEDRIRIIKDVAHAVLYLHEGWEVKVVHRDIKASNVLLDKDMNGKLGDFGLARMQDHGQVASTTKLVGTVGYMAPEVIKTGRTSTHTDVYMFGILILEVMCGRRPLEEGKPSLVEFVWKLMVQGELVNALDQRLRDKGEFSLQELERVLHLGLLCAYPEPKSRPTMRQVVNILEGKNEGVEESEIENMDSYLLQQLKSRDILAEYSQYFSYASHPTFQDIGAHFSSTSFTWSGSLVQGR*