AlfalfaGEDB | MsaG006566

M. sativa ssp. caerulea / MsaG006566

KEGG: -
GO: -
PFAM: PF09133.13

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006566	XP_013448301.1	88.034	351	35	3	1	349	1	346	0.0	625

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006566	sp\|Q8RWD7\|EMB74_ARATH	38.053	113	63	3	22	132	64	171	1.23e-16	82.4

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006566	tr\|A0A072TZN4\|A0A072TZN4_MEDTR	88.034	351	35	3	1	349	1	346	0.0	625

TFs/TRs:

Gene ID	Type	Classification
MsaG006566	TR	Others

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000138	MsaG006566	0.822896	3.269312e-53	7.766951e-51
MsaG000917	MsaG006566	0.851236	1.932711e-60	1.093116e-57
MsaG001270	MsaG006566	0.809340	3.389273e-50	5.696143e-48
MsaG001277	MsaG006566	0.827042	3.471430e-54	9.241207e-52
MsaG002133	MsaG006566	0.815691	1.406906e-51	2.767700e-49
MsaG003524	MsaG006566	0.802347	9.838620e-49	1.402937e-46
MsaG004400	MsaG006566	0.804732	3.167492e-49	4.772261e-47
MsaG004404	MsaG006566	0.820465	1.185582e-52	2.639852e-50
MsaG004415	MsaG006566	0.811183	1.363132e-50	2.396032e-48
MsaG004416	MsaG006566	0.801701	1.333878e-48	1.874164e-46
MsaG004821	MsaG006566	0.833614	8.745193e-56	2.811013e-53
MsaG005137	MsaG006566	0.808604	4.863744e-50	8.030751e-48
MsaG005632	MsaG006566	0.805310	2.400270e-49	3.665234e-47
MsaG006463	MsaG006566	0.803360	6.091007e-49	8.889957e-47
MsaG006566	MsaG006567	0.885381	1.841473e-71	4.297139e-68
MsaG006566	MsaG006932	0.868206	1.566489e-65	1.685307e-62
MsaG006566	MsaG007243	0.805162	2.577174e-49	3.921964e-47
MsaG006566	MsaG007363	0.819967	1.539822e-52	3.383763e-50
MsaG006566	MsaG007447	0.833000	1.242140e-55	3.921066e-53
MsaG006566	MsaG007951	0.813785	3.702665e-51	6.942541e-49
MsaG006566	MsaG011213	0.808261	5.752014e-50	9.419600e-48
MsaG006566	MsaG011690	0.814964	2.038014e-51	3.936124e-49
MsaG006566	MsaG012125	0.879305	2.923006e-69	5.109098e-66
MsaG006566	MsaG014049	0.836750	1.426365e-56	5.035506e-54
MsaG006566	MsaG015221	0.813777	3.717019e-51	6.968047e-49
MsaG006566	MsaG016945	0.833275	1.061747e-55	3.378921e-53
MsaG006566	MsaG017619	0.810203	2.215225e-50	3.801649e-48
MsaG006566	MsaG017884	0.860032	5.382932e-63	4.190184e-60
MsaG006566	MsaG018493	0.810404	2.006013e-50	3.459669e-48
MsaG006566	MsaG020190	0.803997	4.497719e-49	6.662161e-47
MsaG006566	MsaG021320	0.842014	6.222083e-58	2.588721e-55
MsaG006566	MsaG021433	0.835010	3.921072e-56	1.313839e-53
MsaG006566	MsaG021438	0.802554	8.922599e-49	1.278342e-46
MsaG006566	MsaG021666	0.823654	2.178981e-53	5.284214e-51
MsaG006566	MsaG022363	0.826120	5.743360e-54	1.490287e-51
MsaG006566	MsaG025316	0.865295	1.309726e-64	1.252098e-61
MsaG006566	MsaG025448	0.815179	1.826802e-51	3.547334e-49
MsaG006566	MsaG025760	0.826074	5.889174e-54	1.526182e-51
MsaG006566	MsaG025823	0.821619	6.449314e-53	1.480539e-50
MsaG006566	MsaG025946	0.814874	2.133493e-51	4.111169e-49
MsaG006566	MsaG026820	0.800381	2.474660e-48	3.374854e-46
MsaG006566	MsaG027084	0.823890	1.919987e-53	4.685759e-51
MsaG006566	MsaG027225	0.816973	7.291377e-52	1.482167e-49
MsaG006566	MsaG027432	0.805134	2.612149e-49	3.972577e-47
MsaG006566	MsaG027690	0.803217	6.518943e-49	9.483049e-47
MsaG006566	MsaG028159	0.820483	1.174484e-52	2.616350e-50
MsaG006566	MsaG028924	0.803929	4.645563e-49	6.870273e-47
MsaG006566	MsaG029170	0.802061	1.125580e-48	1.594528e-46
MsaG006566	MsaG029247	0.812070	8.759728e-51	1.573583e-48
MsaG006566	MsaG029717	0.808214	5.884185e-50	9.625056e-48
MsaG006566	MsaG029758	0.801126	1.746816e-48	2.422583e-46
MsaG006566	MsaG030106	0.804094	4.296002e-49	6.377796e-47
MsaG006566	MsaG031114	0.810164	2.258871e-50	3.872833e-48
MsaG006566	MsaG034625	0.817362	5.967795e-52	1.225320e-49
MsaG006566	MsaG039607	0.813932	3.437911e-51	6.469892e-49
MsaG006566	MsaG039975	0.833093	1.178109e-55	3.729271e-53
MsaG006566	MsaG039976	0.832351	1.797026e-55	5.566175e-53
MsaG006566	MsaG040748	0.800238	2.646257e-48	3.597063e-46
MsaG006566	MsaG041746	0.820019	1.498337e-52	3.297123e-50
MsaG006566	MsaG042720	0.803882	4.751032e-49	7.018483e-47
MsaG006566	MsaG042932	0.804886	2.941579e-49	4.447870e-47
MsaG006566	MsaG044734	0.800155	2.749875e-48	3.730991e-46
MsaG006566	MsaG044816	0.806872	1.130368e-49	1.790672e-47
MsaG006566	MsaG044915	0.838065	6.593413e-57	2.423045e-54
MsaG006566	MsaG045605	0.837815	7.638306e-57	2.785485e-54
MsaG006566	MsaG046032	0.803200	6.570493e-49	9.554454e-47
MsaG006566	MsaG046828	0.840476	1.571679e-57	6.227929e-55
MsaG006566	MsaG047200	0.811722	1.042328e-50	1.856517e-48
MsaG006566	MsaG001347	0.886551	6.717038e-72	1.660919e-68
MsaG006566	MsaG013381	0.876352	3.112420e-68	4.754366e-65
MsaG006566	MsaG016523	0.806953	1.086964e-49	1.725193e-47
MsaG006566	MsaG018510	0.801714	1.325634e-48	1.863128e-46
MsaG006566	MsaG019874	0.826167	5.599581e-54	1.454845e-51
MsaG006566	MsaG034809	0.810539	1.875947e-50	3.246053e-48
MsaG006566	MsaG038118	0.837143	1.133666e-56	4.050162e-54
MsaG006566	MsaG036864	0.861851	1.515870e-63	1.264822e-60
MsaG006566	MsaG036911	0.872107	8.400920e-67	1.064925e-63
MsaG006566	MsaG036860	0.803773	5.005287e-49	7.375440e-47
MsaG006566	MsaG043497	0.813250	4.848156e-51	8.968941e-49
MsaG006566	MsaG042904	0.854996	1.639663e-61	1.059084e-58

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006566	MtrunA17_Chr7g0231611	88.034	351	35	3	1	349	1	346	0.0	625
MsaG006566	MtrunA17_Chr5g0416851	88.319	351	34	3	1	349	1	346	0.0	615
MsaG006566	MtrunA17_Chr2g0282701	86.275	255	15	2	96	349	42	277	7.67e-148	418
MsaG006566	MtrunA17_Chr1g0182611	33.099	142	81	6	1	132	1	138	1.18e-15	77.8
MsaG006566	MtrunA17_Chr1g0182621	35.294	119	63	4	22	134	28	138	1.53e-14	74.7

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006566	AT1G58210.1	38.053	113	63	3	22	132	64	171	1.25e-17	82.4

Find 73 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCCACTTTACGTAAAGAAAT+TGG	0.221596	2:-6941160	MsaT006566.1:CDS
CCTTGTGGTCACTTGATAAT+TGG	0.239096	2:+6941130	None:intergenic
GTGTGGTGGTGGAACGTATT+GGG	0.250160	2:+6942350	None:intergenic
GGTGGAACGTATTGGGGTTT+TGG	0.271264	2:+6942357	None:intergenic
TCCAATTTCTTTACGTAAAG+TGG	0.301497	2:+6941159	None:intergenic
GTGATTTATAATGGTGAAAA+TGG	0.304153	2:-6941483	MsaT006566.1:CDS
CAGTTGGATTTCCACACAAT+TGG	0.315477	2:-6941677	MsaT006566.1:CDS
GTGATTTCTAATGGTGAAAA+TGG	0.338731	2:-6941273	MsaT006566.1:CDS
GCCTCACATACATCTCAAAA+TGG	0.350427	2:-6941936	MsaT006566.1:CDS
GTTGGAGAGGGGTGTGGTGG+TGG	0.351038	2:+6942339	None:intergenic
TGTGGTGGTGGAACGTATTG+GGG	0.352785	2:+6942351	None:intergenic
CAAGTTGGCGTGATTTATAA+TGG	0.357302	2:-6941492	MsaT006566.1:CDS
TGCAAGGGTTTAGCTCTTGC+TGG	0.372413	2:-6942161	MsaT006566.1:CDS
GGTGTGGTGGTGGAACGTAT+TGG	0.373524	2:+6942349	None:intergenic
AATTATTCAGCTCATAGTTC+AGG	0.376079	2:-6941651	MsaT006566.1:CDS
GCTAAACCCTTGCATTGGTT+TGG	0.379957	2:+6942170	None:intergenic
AGCAGCTGATGAAACTTTGC+AGG	0.381501	2:-6941418	MsaT006566.1:CDS
AAGTCACATGATGCTTATAA+AGG	0.387819	2:-6941025	MsaT006566.1:CDS
TGAAACTTTGCAGGAAGATA+TGG	0.392140	2:-6941409	MsaT006566.1:CDS
TCTTGCTGGCATTGCTTCAA+TGG	0.402134	2:-6942147	MsaT006566.1:CDS
ATACCGGTAACTTGTGTAGT+AGG	0.407561	2:-6941074	MsaT006566.1:CDS
ACAACAATATTGCGAGTCTA+AGG	0.409478	2:-6941527	MsaT006566.1:CDS
CAGGTTGCCGTGATTTCTAA+TGG	0.414513	2:-6941282	MsaT006566.1:CDS
CACCCTACTACACAAGTTAC+CGG	0.426920	2:+6941071	None:intergenic
CCCATGAGCCAGGCAGTGTT+AGG	0.434002	2:-6941185	MsaT006566.1:CDS
TTTGAAGATTGAGTTGGAGA+GGG	0.438182	2:+6942327	None:intergenic
GGGTCTTGAGTTGTCTCAAC+AGG	0.439702	2:-6941361	MsaT006566.1:CDS
GAACACGTGGATAAAGTTAC+TGG	0.442596	2:-6941618	MsaT006566.1:CDS
AAACCCTTGCATTGGTTTGG+AGG	0.442882	2:+6942173	None:intergenic
ATCTTGAGTCTCTACAACAT+TGG	0.448912	2:+6941992	None:intergenic
GCAATGTTGTCATTACCTTC+AGG	0.449864	2:+6941384	None:intergenic
GAAGGTAATGACAACATTGC+GGG	0.450334	2:-6941381	MsaT006566.1:CDS
CACATGATGCTTATAAAGGA+TGG	0.459002	2:-6941021	MsaT006566.1:CDS
TTTAGATTTGAAGATTGAGT+TGG	0.459049	2:+6942321	None:intergenic
TCTTGAGTCTCTACAACATT+GGG	0.460912	2:+6941993	None:intergenic
CTTCTGTTAGAAGATCTACC+AGG	0.478887	2:-6940975	MsaT006566.1:CDS
ACCTAACACTGCCTGGCTCA+TGG	0.480484	2:+6941184	None:intergenic
GCAATGTTGTCATTACCTTC+CGG	0.481010	2:+6941327	None:intergenic
TGAGTTGGAGAGGGGTGTGG+TGG	0.489080	2:+6942336	None:intergenic
ATTTGAAGATTGAGTTGGAG+AGG	0.496033	2:+6942326	None:intergenic
TTATGTCGCCGTTTCTCAGT+TGG	0.496930	2:-6941693	MsaT006566.1:CDS
TGATACATTTCTTATCCTTG+TGG	0.504839	2:+6941115	None:intergenic
GTTGTCTCAACAGGAAGATA+TGG	0.506535	2:-6941352	MsaT006566.1:CDS
GATTGAGTTGGAGAGGGGTG+TGG	0.509260	2:+6942333	None:intergenic
TTGAAGATTGAGTTGGAGAG+GGG	0.510736	2:+6942328	None:intergenic
TCTTGATTTGTCTCAACCGC+AGG	0.523290	2:-6941301	MsaT006566.1:CDS
CCTAACACTGCCTGGCTCAT+GGG	0.526114	2:+6941185	None:intergenic
CAAGAGCTAAACCCTTGCAT+TGG	0.528805	2:+6942165	None:intergenic
TCAACAGGAAGATATGGAAC+CGG	0.540435	2:-6941346	MsaT006566.1:CDS
TTTGATCCTACCCATGAGCC+AGG	0.541769	2:-6941195	MsaT006566.1:CDS
AAGAAGAATGTAGATGATAC+CGG	0.549093	2:-6941090	MsaT006566.1:CDS
AGTGGAGACCTAACACTGCC+TGG	0.549411	2:+6941177	None:intergenic
GTGGAAATCCAACTGAGAAA+CGG	0.556021	2:+6941685	None:intergenic
ACATGATGCTTATAAAGGAT+GGG	0.566978	2:-6941020	MsaT006566.1:CDS
GGCATCACTGTAATGTTCCA+CGG	0.577101	2:-6941969	MsaT006566.1:CDS
TTATAAATCACGCCAACTTG+AGG	0.591187	2:+6941495	None:intergenic
TACCGGTAACTTGTGTAGTA+GGG	0.605302	2:-6941073	MsaT006566.1:CDS
GAAACCTCCAAACCAATGCA+AGG	0.605866	2:-6942177	MsaT006566.1:CDS
ACACTGCCTGGCTCATGGGT+AGG	0.608929	2:+6941189	None:intergenic
CCAATTATCAAGTGACCACA+AGG	0.618748	2:-6941130	MsaT006566.1:CDS
CAGGAAGATATGGAACCTGA+AGG	0.622434	2:-6941399	MsaT006566.1:CDS
AAACCTCCAAACCAATGCAA+GGG	0.637222	2:-6942176	MsaT006566.1:CDS
AGGTTGTCTCAACCTCAAGT+TGG	0.639538	2:-6941507	MsaT006566.1:CDS
GTTACCTTCAGCTTCCTGTG+AGG	0.642766	2:+6941548	None:intergenic
GAGACCTCACAGGAAGCTGA+AGG	0.643008	2:-6941552	MsaT006566.1:CDS
AACAGCTGATGAGACCTCAC+AGG	0.646895	2:-6941562	MsaT006566.1:CDS
AATGTTGTAGAGACTCAAGA+TGG	0.656225	2:-6941990	MsaT006566.1:CDS
CAGGAAGATATGGAACCGGA+AGG	0.662654	2:-6941342	MsaT006566.1:CDS
AGGAAATGAATGTGAACACG+TGG	0.663886	2:-6941631	MsaT006566.1:CDS
TTCTGTTAGAAGATCTACCA+GGG	0.673391	2:-6940974	MsaT006566.1:CDS
TTAGAAATCACGGCAACCTG+CGG	0.679371	2:+6941285	None:intergenic
TGAAGGTAATGACAACATTG+CGG	0.680073	2:-6941382	MsaT006566.1:CDS
GTGAGGCGTTAATCAAACCG+TGG	0.715788	2:+6941952	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	6940954	6942386	6940954	ID=MsaG006566
Chr2	mRNA	6940954	6942386	6940954	ID=MsaT006566.1;Parent=MsaG006566
Chr2	exon	6940954	6941715	6940954	ID=MsaT006566.1.exon4;Parent=MsaT006566.1
Chr2	CDS	6940954	6941715	6940954	ID=cds.MsaT006566.1;Parent=MsaT006566.1
Chr2	exon	6941923	6942061	6941923	ID=MsaT006566.1.exon3;Parent=MsaT006566.1
Chr2	CDS	6941923	6942061	6941923	ID=cds.MsaT006566.1;Parent=MsaT006566.1
Chr2	exon	6942146	6942225	6942146	ID=MsaT006566.1.exon2;Parent=MsaT006566.1
Chr2	CDS	6942146	6942225	6942146	ID=cds.MsaT006566.1;Parent=MsaT006566.1
Chr2	exon	6942318	6942386	6942318	ID=MsaT006566.1.exon1;Parent=MsaT006566.1
Chr2	CDS	6942318	6942386	6942318	ID=cds.MsaT006566.1;Parent=MsaT006566.1

Gene Sequence

>MsaT006566.1

ATGGCTTCCAAAACCCCAATACGTTCCACCACCACACCCCTCTCCAACTCAATCTTCAAATCTAAACACATTTTCTTACATGAATGGTGGCTTGTGAAACCTCCAAACCAATGCAAGGGTTTAGCTCTTGCTGGCATTGCTTCAATGGAGAGAGAAAGAATGTTTTTTTCTTCACTGATTGTAGAGAGACATGAACCCAATGTTGTAGAGACTCAAGATGGCATCACTGTAATGTTCCACGGTTTGATTAACGCCTCACATACATCTCAAAATGGTTTTTCTTCTGAGTTATGTCGCCGTTTCTCAGTTGGATTTCCACACAATTGGAAAAATTATTCAGCTCATAGTTCAGGAAATGAATGTGAACACGTGGATAAAGTTACTGGTTTTGACGACTCAAATACTTCTTCCCATAAAAAAACAGCTGATGAGACCTCACAGGAAGCTGAAGGTAACAACAATATTGCGAGTCTAAGGTTGTCTCAACCTCAAGTTGGCGTGATTTATAATGGTGAAAATGGATTCTCAAATGTTGACAACTCAAATGCTTCATCCCACAAAAAAGCAGCTGATGAAACTTTGCAGGAAGATATGGAACCTGAAGGTAATGACAACATTGCGGGTCTTGAGTTGTCTCAACAGGAAGATATGGAACCGGAAGGTAATGACAACATTGCGAGTCTTGATTTGTCTCAACCGCAGGTTGCCGTGATTTCTAATGGTGAAAATGGAGTCTCAAGTGTTGCTGCAGCTGAAAATAGTCAATCTTTGATGAGTGTATTTGAATTTGATCCTACCCATGAGCCAGGCAGTGTTAGGTCTCCACTTTACGTAAAGAAATTGGAGTTTGACCAATTATCAAGTGACCACAAGGATAAGAAATGTATCAAGAAGAAGAATGTAGATGATACCGGTAACTTGTGTAGTAGGGTGCTAACAAGAAGCATTGCCAAGAAAAGTCACATGATGCTTATAAAGGATGGGAAAGCTGAAGTAAAATGTTTCACTTCTGTTAGAAGATCTACCAGGGTACTAAATTATAAAAAATGA

Protein sequence

>MsaT006566.1

MASKTPIRSTTTPLSNSIFKSKHIFLHEWWLVKPPNQCKGLALAGIASMERERMFFSSLIVERHEPNVVETQDGITVMFHGLINASHTSQNGFSSELCRRFSVGFPHNWKNYSAHSSGNECEHVDKVTGFDDSNTSSHKKTADETSQEAEGNNNIASLRLSQPQVGVIYNGENGFSNVDNSNASSHKKAADETLQEDMEPEGNDNIAGLELSQQEDMEPEGNDNIASLDLSQPQVAVISNGENGVSSVAAAENSQSLMSVFEFDPTHEPGSVRSPLYVKKLEFDQLSSDHKDKKCIKKKNVDDTGNLCSRVLTRSIAKKSHMMLIKDGKAEVKCFTSVRRSTRVLNYKK*