AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006586


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006586 MtrunA17_Chr2g0282961 84.919 683 31 7 1 681 1 613 0.0 1083
MsaG006586 MtrunA17_Chr4g0046371 66.571 697 168 18 1 679 2 651 0.0 847
MsaG006586 MtrunA17_Chr4g0029671 51.464 478 212 9 52 512 53 527 4.76e-149 452
MsaG006586 MtrunA17_Chr2g0326281 40.639 657 323 17 52 673 55 679 4.48e-141 432
MsaG006586 MtrunA17_Chr8g0385791 48.157 407 191 3 47 442 53 450 2.22e-121 381
MsaG006586 MtrunA17_Chr2g0276781 49.448 362 166 3 53 407 23 374 5.99e-113 355
MsaG006586 MtrunA17_Chr4g0009751 45.432 405 196 7 53 448 19 407 3.02e-110 346
MsaG006586 MtrunA17_Chr5g0433301 48.837 387 158 7 51 416 20 387 2.92e-108 347
MsaG006586 MtrunA17_Chr4g0070181 50.862 348 153 3 49 388 19 356 1.93e-107 351
MsaG006586 MtrunA17_Chr2g0285461 50.000 370 154 9 35 388 4 358 3.78e-107 346
MsaG006586 MtrunA17_Chr2g0301251 51.020 343 152 2 53 388 23 356 9.54e-107 349
MsaG006586 MtrunA17_Chr8g0376771 49.041 365 164 7 35 388 4 357 1.62e-106 344
MsaG006586 MtrunA17_Chr3g0109391 48.187 386 162 7 51 416 22 389 2.33e-106 342
MsaG006586 MtrunA17_Chr1g0156321 50.000 364 158 7 53 405 43 393 2.18e-105 340
MsaG006586 MtrunA17_Chr8g0346711 47.107 363 170 7 53 407 29 377 1.27e-101 325
MsaG006586 MtrunA17_Chr8g0389081 49.858 351 156 5 48 388 27 367 7.86e-101 333
MsaG006586 MtrunA17_Chr7g0239061 42.963 405 200 9 53 447 14 397 2.39e-95 308
MsaG006586 MtrunA17_Chr2g0326761 39.706 408 184 11 53 418 11 398 5.91e-84 279
MsaG006586 MtrunA17_Chr4g0028971 36.285 463 230 7 47 465 6 447 1.18e-82 275
MsaG006586 MtrunA17_Chr1g0199681 39.604 404 190 11 27 387 65 457 4.31e-82 274
MsaG006586 MtrunA17_Chr1g0181211 37.413 433 207 10 51 432 23 442 5.18e-80 268
MsaG006586 MtrunA17_Chr7g0264171 37.018 389 186 9 49 387 27 406 4.78e-71 242
MsaG006586 MtrunA17_Chr3g0115271 35.714 406 213 6 39 407 5 399 6.49e-68 233
MsaG006586 MtrunA17_Chr7g0264161 39.677 310 174 5 62 367 1 301 6.94e-65 216
MsaG006586 MtrunA17_Chr5g0424931 34.015 391 198 11 32 387 2 367 1.15e-64 223
MsaG006586 MtrunA17_Chr5g0417281 35.674 356 185 11 47 387 5 331 3.55e-61 213
MsaG006586 MtrunA17_Chr8g0356211 41.353 266 142 5 166 429 2 255 2.32e-60 205
MsaG006586 MtrunA17_Chr5g0436761 34.943 352 185 12 53 387 12 336 1.29e-51 185
MsaG006586 MtrunA17_Chr1g0178011 30.595 353 218 9 45 387 3 338 3.89e-51 184
MsaG006586 MtrunA17_Chr2g0289221 35.821 335 179 11 45 367 11 321 4.24e-51 181
MsaG006586 MtrunA17_Chr2g0277461 31.014 345 207 9 53 387 13 336 3.01e-47 173
MsaG006586 MtrunA17_Chr5g0417211 32.229 332 181 10 53 368 12 315 5.87e-46 168
MsaG006586 MtrunA17_Chr5g0424801 30.214 374 216 13 43 397 4 351 7.69e-42 156
MsaG006586 MtrunA17_Chr5g0424741 30.208 384 228 11 44 393 3 380 8.29e-42 159
MsaG006586 MtrunA17_Chr5g0425261 29.947 374 217 13 43 397 4 351 7.33e-40 150
MsaG006586 MtrunA17_Chr2g0277531 28.896 308 189 11 53 350 20 307 5.46e-34 132
MsaG006586 MtrunA17_Chr5g0425661 34.783 207 122 4 53 255 37 234 4.30e-33 127
MsaG006586 MtrunA17_Chr8g0345771 36.752 117 72 2 136 252 150 264 9.77e-13 71.2
MsaG006586 MtrunA17_Chr7g0276471 41.304 92 53 1 156 247 116 206 1.18e-12 70.9
MsaG006586 MtrunA17_Chr5g0424791 28.571 154 92 5 99 252 14 149 8.45e-12 63.5
MsaG006586 MtrunA17_Chr1g0178071 30.457 197 125 7 125 310 39 234 3.20e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006586 AT2G33860.1 58.801 517 178 4 2 515 3 487 0.0 601
MsaG006586 AT2G33860.2 59.945 362 110 4 157 515 1 330 2.02e-145 431
MsaG006586 AT5G60450.2 48.861 483 217 9 49 512 37 508 1.02e-140 430
MsaG006586 AT5G60450.1 49.061 479 214 9 53 512 65 532 4.84e-140 429
MsaG006586 AT5G62000.2 43.886 458 230 5 13 458 27 469 4.08e-119 376
MsaG006586 AT5G62000.5 43.886 458 230 5 13 458 27 469 4.08e-119 376
MsaG006586 AT5G62000.3 43.886 458 230 5 13 458 27 469 4.08e-119 376
MsaG006586 AT5G62000.1 43.886 458 230 5 13 458 27 469 4.08e-119 376
MsaG006586 AT5G62000.4 43.886 458 230 5 13 458 27 469 4.42e-119 376
MsaG006586 AT1G59750.4 49.568 347 158 3 49 388 18 354 4.05e-111 350
MsaG006586 AT1G59750.2 49.568 347 158 3 49 388 18 354 4.51e-111 350
MsaG006586 AT1G59750.1 49.568 347 158 3 49 388 18 354 5.26e-111 350
MsaG006586 AT1G59750.3 49.568 347 158 3 49 388 18 354 5.26e-111 350
MsaG006586 AT1G19220.1 51.603 343 150 2 53 388 23 356 7.30e-108 352
MsaG006586 AT2G46530.1 49.133 346 151 6 53 388 21 351 2.73e-106 335
MsaG006586 AT5G37020.2 46.078 408 179 10 47 436 14 398 3.67e-106 340
MsaG006586 AT2G46530.3 49.133 346 151 6 53 388 42 372 5.32e-106 335
MsaG006586 AT5G37020.1 45.813 406 183 8 47 436 14 398 9.18e-106 340
MsaG006586 AT3G61830.1 47.159 352 161 5 47 388 19 355 6.94e-105 332
MsaG006586 AT4G23980.1 44.330 388 192 6 53 432 12 383 5.04e-104 330
MsaG006586 AT1G30330.3 51.724 348 144 8 53 388 25 360 5.82e-104 338
MsaG006586 AT1G30330.2 51.724 348 144 8 53 388 25 360 5.82e-104 338
MsaG006586 AT4G23980.2 44.709 378 182 6 53 415 12 377 6.78e-104 330
MsaG006586 AT1G30330.1 51.724 348 144 8 53 388 23 358 8.76e-104 338
MsaG006586 AT5G20730.2 50.291 344 153 3 53 388 24 357 2.66e-102 338
MsaG006586 AT1G19850.2 49.570 349 148 6 53 387 43 377 1.09e-101 331
MsaG006586 AT1G19850.1 49.570 349 148 6 53 387 54 388 1.29e-101 331
MsaG006586 AT5G20730.3 50.145 345 153 4 53 388 24 358 9.59e-101 333
MsaG006586 AT5G20730.1 50.145 345 153 4 53 388 24 358 1.58e-100 333
MsaG006586 AT3G61830.2 48.505 301 142 3 88 388 17 304 1.52e-92 298
MsaG006586 AT1G35540.1 41.481 405 203 8 53 439 27 415 1.93e-90 294
MsaG006586 AT1G35240.1 42.092 392 197 8 53 435 27 397 2.80e-89 290
MsaG006586 AT1G34410.1 41.646 401 200 10 53 435 27 411 1.17e-88 289
MsaG006586 AT1G34390.1 42.063 378 190 7 53 419 27 386 1.70e-88 288
MsaG006586 AT1G34310.1 41.799 378 193 6 53 419 27 388 8.68e-87 284
MsaG006586 AT1G35520.1 41.270 378 195 7 53 419 27 388 4.27e-86 282
MsaG006586 AT1G34170.1 37.188 441 220 11 53 459 25 442 7.61e-85 276
MsaG006586 AT4G30080.1 41.398 372 174 9 53 387 19 383 2.49e-82 274
MsaG006586 AT5G37020.3 51.064 282 126 5 158 436 31 303 4.47e-82 275
MsaG006586 AT2G28350.2 39.410 373 187 5 53 387 10 381 1.44e-81 272
MsaG006586 AT2G28350.1 39.410 373 187 5 53 387 10 381 2.10e-81 272
MsaG006586 AT2G46530.2 54.506 233 99 4 158 388 37 264 3.18e-80 264
MsaG006586 AT1G34170.2 34.694 441 205 11 53 459 25 416 3.19e-72 242
MsaG006586 AT1G34170.3 34.624 439 208 10 53 459 25 416 2.00e-71 242
MsaG006586 AT1G77850.2 34.129 419 211 13 54 432 20 413 3.87e-63 221
MsaG006586 AT1G77850.1 34.129 419 211 13 54 432 20 413 4.01e-63 220
MsaG006586 AT1G43950.1 47.170 212 89 6 53 257 27 222 2.99e-52 180
MsaG006586 AT2G46870.1 38.211 123 68 3 141 258 20 139 6.32e-14 73.6
MsaG006586 AT1G01030.2 41.304 92 53 1 156 247 54 144 1.94e-13 72.4
MsaG006586 AT1G01030.1 41.304 92 53 1 156 247 54 144 2.72e-13 72.4
MsaG006586 AT4G01500.1 40.217 92 52 1 156 247 34 122 2.92e-13 72.0
MsaG006586 AT1G13260.1 31.410 156 91 3 157 308 187 330 1.59e-12 69.7
MsaG006586 AT3G25730.1 31.818 132 78 3 153 282 178 299 5.20e-12 68.2
MsaG006586 AT3G61970.1 36.667 120 72 2 140 256 5 123 7.09e-12 67.4

Find 197 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGTGCAGGCCATCCATTTC+TGG 0.192673 2:+7199267 None:intergenic
GTGATGCTGTGTTGTTTCTT+AGG 0.208732 2:-7201024 MsaT006586.1:intron
CTTGACCTTGCAAGACCTTT+TGG 0.224240 2:+7199386 None:intergenic
TCCTCAAGGTTCTGTTTGTT+TGG 0.242457 2:-7202586 MsaT006586.1:CDS
CTGGAAGGCACAACTTCTTT+TGG 0.244577 2:-7199034 MsaT006586.1:CDS
AGGCATCAAGGCATAATAAT+AGG 0.252606 2:-7199871 MsaT006586.1:CDS
CTTGCAAGGTCAAGAAATTA+TGG 0.253844 2:-7199584 MsaT006586.1:CDS
ACAACAATGCTTCCTTTCTT+TGG 0.260385 2:+7202525 None:intergenic
GGATTGGAGCGTCAGACTTT+GGG 0.304165 2:-7199630 MsaT006586.1:CDS
ACTAGCTGCCATCAGGTTAC+TGG 0.311822 2:+7199805 None:intergenic
CCCTGTAACGGCATAGGCTT+TGG 0.312124 2:-7199424 MsaT006586.1:CDS
ACCAAAGCCTATGCCGTTAC+AGG 0.314128 2:+7199423 None:intergenic
GCTAGTCCACTAGATAAAAT+AGG 0.316462 2:+7199058 None:intergenic
GATATGGTTTCTTGTAAAAC+TGG 0.319862 2:-7198926 MsaT006586.1:CDS
CTTGACCTTGCAAGACCTTT+CGG 0.326370 2:+7199593 None:intergenic
TTGAGCATTAATACTGTCAT+AGG 0.327410 2:+7199549 None:intergenic
TGCCATCAGGTTACTGGAAT+TGG 0.331969 2:+7199811 None:intergenic
TTTGATCCTGGCCATCTAAC+AGG 0.335220 2:+7200414 None:intergenic
AGGAGGCATTTGCTCACAAC+TGG 0.344623 2:-7201085 MsaT006586.1:CDS
TTGAAAAGTTCTGGTTCCTT+TGG 0.345700 2:-7200877 MsaT006586.1:CDS
CTTGTTGGTTCCTGAAAATC+AGG 0.346782 2:-7202069 MsaT006586.1:intron
GAAGAAGAAATAGCTGAATA+TGG 0.353827 2:+7202678 None:intergenic
ATTCTGCTGGAATGAGGTTC+AGG 0.356740 2:-7200590 MsaT006586.1:CDS
GTTCTGTTTGTTTGGAGCTA+TGG 0.357996 2:-7202578 MsaT006586.1:CDS
CTTAGAAAATTACTTGGAAC+TGG 0.358853 2:+7199737 None:intergenic
ATCCCGGTTCAAACTGTTCC+GGG 0.364323 2:-7199495 MsaT006586.1:CDS
TCATACCGAGAGTTTGAAAC+TGG 0.364947 2:+7199151 None:intergenic
ACCTCCCTAGCTCATATAAC+CGG 0.366764 2:+7199521 None:intergenic
CACTTCTGCTTCTGCAGCTA+TGG 0.376990 2:-7202628 MsaT006586.1:CDS
GGTTCCTTTGGAGGGTCCTC+TGG 0.378058 2:-7200865 MsaT006586.1:CDS
GCGGTGCAGTTGAAAAGTTC+TGG 0.379713 2:-7200886 MsaT006586.1:CDS
ATCAAAATGGAAATGCCTAT+TGG 0.380196 2:-7200397 MsaT006586.1:intron
GGGATTGGAGCGTCAGACTT+TGG 0.382193 2:-7199631 MsaT006586.1:CDS
AAAACTGGCTGCAGACTCTT+CGG 0.383825 2:-7198911 MsaT006586.1:CDS
CTTGATTGTTCTTATTCTGC+TGG 0.385178 2:-7200603 MsaT006586.1:CDS
TGAGAGTCTTGCAGAACATA+TGG 0.388643 2:+7201619 None:intergenic
TGATAATATTAATCTCAATC+AGG 0.389378 2:-7199131 MsaT006586.1:CDS
TATCCCGGTTCAAACTGTTC+CGG 0.398623 2:-7199496 MsaT006586.1:CDS
GCAAGTGGAGCAAAATGTTC+GGG 0.402501 2:-7201706 MsaT006586.1:CDS
AAAAGTTCTGGTTCCTTTGG+AGG 0.403391 2:-7200874 MsaT006586.1:CDS
AGGGTCCTCTGGTATGCAAT+TGG 0.407086 2:-7200854 MsaT006586.1:CDS
AATAATAATAATTTGTTGGA+TGG 0.408057 2:-7198992 MsaT006586.1:CDS
AAACTGGCTGCAGACTCTTC+GGG 0.411738 2:-7198910 MsaT006586.1:CDS
CCAATGCTCGGGTCCAGAAA+TGG 0.411902 2:-7199280 MsaT006586.1:CDS
TTGATCTCTTTACCAAAGAA+AGG 0.420423 2:-7202537 MsaT006586.1:CDS
GGAGGTTCCGGCATATATAC+AGG 0.422819 2:-7201208 MsaT006586.1:CDS
TCTGGTATGCAATTGGATCC+TGG 0.423772 2:-7200847 MsaT006586.1:CDS
TTAGATGGCCAGGATCAAAA+TGG 0.424313 2:-7200410 MsaT006586.1:CDS
TTCTAATGAGGCAGGTTCAC+TGG 0.424709 2:-7200465 MsaT006586.1:intron
AGCAAGTGGAGCAAAATGTT+CGG 0.428665 2:-7201707 MsaT006586.1:CDS
TTGCATGCATCTGTTACATC+TGG 0.432429 2:-7199223 MsaT006586.1:CDS
TTTATCTAGTGGACTAGCTC+TGG 0.432678 2:-7199053 MsaT006586.1:CDS
GAGCTATGGCATGCTTGTGC+TGG 0.433793 2:-7202564 MsaT006586.1:CDS
GGAATATTACAAGCAGAAAC+AGG 0.435107 2:+7202462 None:intergenic
ATAATTTGTTGGATGGTTCA+AGG 0.435195 2:-7198985 MsaT006586.1:CDS
TTTGACGAGGCCCGTGGAAG+TGG 0.439439 2:-7199328 MsaT006586.1:CDS
GGCATCAAGGCATAATAATA+GGG 0.442600 2:-7199870 MsaT006586.1:CDS
TGAAGACTGCTTTCCTCCCC+TGG 0.447036 2:-7201544 MsaT006586.1:intron
ATTGGATCCTGGCTCTCTCA+TGG 0.448332 2:-7200836 MsaT006586.1:CDS
AGGTTCACTGGATTAATTGC+TGG 0.450146 2:-7200453 MsaT006586.1:CDS
GCTCTTGTGAAGGCCTCTGC+TGG 0.456741 2:+7201261 None:intergenic
AGGATGGAGAACTGAGACTA+GGG 0.457399 2:-7200918 MsaT006586.1:CDS
CCTCCACCTCTTCCTCCTCA+AGG 0.458803 2:-7202600 MsaT006586.1:CDS
TCATCTTCTTCTTCTCACTC+TGG 0.460997 2:-7202657 MsaT006586.1:CDS
TGTTCCGGGATTGCTGCAAC+AGG 0.462435 2:-7199481 MsaT006586.1:CDS
AATCCCGGAACAGTTTGAAC+CGG 0.468798 2:+7199492 None:intergenic
GTTGTGAGCAAATGCCTCCT+TGG 0.470083 2:+7201088 None:intergenic
ACTAGATAAAATAGGCTTGT+GGG 0.474427 2:+7199066 None:intergenic
GCAGCGTCATGCATCTGTGC+AGG 0.474941 2:+7199253 None:intergenic
TGATATATTAGGGGTGAGGA+TGG 0.479470 2:-7200934 MsaT006586.1:intron
CCATTTCTGGACCCGAGCAT+TGG 0.481294 2:+7199280 None:intergenic
TACATATCTGAAGCTAAAAG+TGG 0.482634 2:-7199103 MsaT006586.1:CDS
ATGGCTCGGAGTGGAGGTTC+CGG 0.487428 2:-7201220 MsaT006586.1:CDS
GATGAGAGACAATCAAGATA+TGG 0.488060 2:-7198942 MsaT006586.1:CDS
TGAATCTTTCAGATTCCAAA+AGG 0.488445 2:-7199401 MsaT006586.1:CDS
ATTTCCTGTTGCAGCAATCC+CGG 0.489961 2:+7199477 None:intergenic
GTGGATCCTGTTAGATGGCC+AGG 0.491480 2:-7200420 MsaT006586.1:CDS
TCTTCAAACTAGCTGCCATC+AGG 0.491550 2:+7199798 None:intergenic
CCATGGGAAATCGAGCCATC+TGG 0.493386 2:-7199842 MsaT006586.1:CDS
GTTCTTATTCTGCTGGAATG+AGG 0.495749 2:-7200596 MsaT006586.1:CDS
CAGCAGAATAAGAACAATCA+AGG 0.499150 2:+7200604 None:intergenic
CTCTTCAAGAACTTGTTGAC+AGG 0.502590 2:+7200627 None:intergenic
CAGCTAGTTTGAAGAGGACC+AGG 0.503820 2:-7199790 MsaT006586.1:CDS
ATCTGTGTTAATGTTCCAGC+AGG 0.504305 2:-7199182 MsaT006586.1:CDS
GCTTCTGACACTAGCACTCA+TGG 0.504325 2:-7201594 MsaT006586.1:CDS
AACGAGGCTCGTCCGTAGGG+TGG 0.505344 2:+7199349 None:intergenic
GGTTGTGTTGGACGTTATGA+TGG 0.506134 2:-7199307 MsaT006586.1:CDS
GGTAAGGTGGGATGATATAG+AGG 0.506725 2:-7199891 MsaT006586.1:CDS
ACAACATCCATGAGAGAGCC+AGG 0.507240 2:+7200829 None:intergenic
TTAATCCAGTTTCAAACTCT+CGG 0.507421 2:-7199156 MsaT006586.1:CDS
GTTTGTTTGACAGATGGGAT+TGG 0.508320 2:-7199646 MsaT006586.1:intron
AAAGTTCTGGTTCCTTTGGA+GGG 0.508492 2:-7200873 MsaT006586.1:CDS
TTGCAAGGTCAAGAAATTAT+GGG 0.510787 2:-7199583 MsaT006586.1:CDS
AGTGTATTGTCAAGTCTTGT+TGG 0.511473 2:-7202084 MsaT006586.1:CDS
TCCGCCAATGTGTGTGTCAT+CGG 0.518100 2:+7198877 None:intergenic
AATTGATGCTGATGCGGAAG+AGG 0.519080 2:-7201676 MsaT006586.1:CDS
CCTTGAGGAGGAAGAGGTGG+AGG 0.520375 2:+7202600 None:intergenic
AGTTTGAAGAGGACCAGGAT+TGG 0.525572 2:-7199785 MsaT006586.1:CDS
GTCCAACACAACCACTTCCA+CGG 0.527880 2:+7199317 None:intergenic
AATAAGAAGAAGCTTGTGTC+TGG 0.529144 2:-7201046 MsaT006586.1:CDS
AAACTGGATTAACAGCCTGC+TGG 0.529156 2:+7199167 None:intergenic
TTAGTGTTTGCTATAATCCA+AGG 0.530357 2:-7200780 MsaT006586.1:intron
TATGATGGTTATCCAATGCT+CGG 0.531088 2:-7199292 MsaT006586.1:CDS
GCCCGTGGAAGTGGTTGTGT+TGG 0.532318 2:-7199319 MsaT006586.1:CDS
GCTCGTCCGTAGGGTGGGCA+CGG 0.538067 2:+7199355 None:intergenic
AACTGAGACTAGGGATTCGT+AGG 0.539200 2:-7200909 MsaT006586.1:CDS
TCTCATCCTTACAGGTAAGG+TGG 0.540717 2:-7199904 MsaT006586.1:intron
TGATGAAGTAAATCCAATCC+TGG 0.540978 2:+7199772 None:intergenic
AGGAAATATCAGAATGCAGC+CGG 0.542520 2:-7199461 MsaT006586.1:CDS
ACCGATGACACACACATTGG+CGG 0.542908 2:-7198878 MsaT006586.1:CDS
TTATTGATATATTAGGGGTG+AGG 0.544361 2:-7200938 MsaT006586.1:intron
GTCAAACGAGGCTCGTCCGT+AGG 0.545617 2:+7199345 None:intergenic
GAGAGTCTTGCAGAACATAT+GGG 0.546093 2:+7201620 None:intergenic
TCCAACACAACCACTTCCAC+GGG 0.546409 2:+7199318 None:intergenic
CTCATCCTTACAGGTAAGGT+GGG 0.547514 2:-7199903 MsaT006586.1:intron
CACTAGATAAAATAGGCTTG+TGG 0.548010 2:+7199065 None:intergenic
ATCTGCATGGCTCGGAGTGG+AGG 0.549415 2:-7201226 MsaT006586.1:CDS
ACAGAACCTTGAGGAGGAAG+AGG 0.550075 2:+7202594 None:intergenic
TAATAATAGGGTTTCCCCAT+GGG 0.552921 2:-7199858 MsaT006586.1:CDS
TTTACTGTGTAGGCTGAGGA+AGG 0.554564 2:-7202116 MsaT006586.1:intron
AGATTCCAAAAGGTCTTGCA+AGG 0.554960 2:-7199391 MsaT006586.1:CDS
GTGATGTGGATCCTGTTAGA+TGG 0.555747 2:-7200425 MsaT006586.1:CDS
TCAAACGAGGCTCGTCCGTA+GGG 0.557969 2:+7199346 None:intergenic
GGAGCAAAATGTTCGGGAAG+GGG 0.558230 2:-7201700 MsaT006586.1:CDS
GAGCTAGGGAGGTGCTATCC+CGG 0.558273 2:-7199511 MsaT006586.1:CDS
CCAGATGGCTCGATTTCCCA+TGG 0.559343 2:+7199842 None:intergenic
TTCACAAGAGCTTGTAGCAA+AGG 0.561527 2:-7201249 MsaT006586.1:CDS
GATAATATTAATCTCAATCA+GGG 0.564287 2:-7199130 MsaT006586.1:CDS
TGGAACATTAACACAGATGA+TGG 0.566397 2:+7199187 None:intergenic
GAACCTTGAGGAGGAAGAGG+TGG 0.567888 2:+7202597 None:intergenic
AGCAAAGGATCTGCATGGCT+CGG 0.568425 2:-7201234 MsaT006586.1:CDS
TGAGCATTAATACTGTCATA+GGG 0.569740 2:+7199550 None:intergenic
ATGATGGTTATCCAATGCTC+GGG 0.570161 2:-7199291 MsaT006586.1:CDS
AGTCCCCGGTTATATGAGCT+AGG 0.571174 2:-7199526 MsaT006586.1:CDS
CTGAAGATGCTGCAGAGCGA+AGG 0.573424 2:-7200554 MsaT006586.1:intron
ACGAGGCTCGTCCGTAGGGT+GGG 0.574143 2:+7199350 None:intergenic
GAGGATGGAGAACTGAGACT+AGG 0.576907 2:-7200919 MsaT006586.1:CDS
CCAAAGCCTATGCCGTTACA+GGG 0.579594 2:+7199424 None:intergenic
CCTCCCTAGCTCATATAACC+GGG 0.579600 2:+7199522 None:intergenic
TTCTTTGGTAAAGAGATCAA+AGG 0.581371 2:+7202540 None:intergenic
TGATGCTGATGCGGAAGAGG+AGG 0.584498 2:-7201673 MsaT006586.1:CDS
ATTCTTCCGTGCCCACCCTA+CGG 0.589745 2:-7199361 MsaT006586.1:CDS
TGGAGCAAAATGTTCGGGAA+GGG 0.590933 2:-7201701 MsaT006586.1:CDS
AGATTCCGAAAGGTCTTGCA+AGG 0.591011 2:-7199598 MsaT006586.1:CDS
GCCTCGTTTGACGAGGCCCG+TGG 0.594609 2:-7199334 MsaT006586.1:CDS
GATTGGAGCGTCAGACTTTG+GGG 0.595092 2:-7199629 MsaT006586.1:CDS
GTATTAATGCTCAAAGTCCC+CGG 0.595936 2:-7199540 MsaT006586.1:CDS
ACATACCCCTGTATATATGC+CGG 0.602336 2:+7201201 None:intergenic
GTGGAGCAAAATGTTCGGGA+AGG 0.607985 2:-7201702 MsaT006586.1:CDS
ATCCCGGAACAGTTTGAACC+GGG 0.608108 2:+7199493 None:intergenic
GGGATGATATAGAGGCATCA+AGG 0.608470 2:-7199883 MsaT006586.1:CDS
TATGTGAAAATTACCAGGGG+AGG 0.608609 2:+7201531 None:intergenic
GAGGTTCCGGCATATATACA+GGG 0.610720 2:-7201207 MsaT006586.1:CDS
TTAACCGATGACACACACAT+TGG 0.611716 2:-7198881 MsaT006586.1:CDS
GGAATCATTAAGATTCCGAA+AGG 0.612567 2:-7199608 MsaT006586.1:CDS
TTCCAATTCCAGTAACCTGA+TGG 0.613226 2:-7199813 MsaT006586.1:CDS
ACTGAGACTAGGGATTCGTA+GGG 0.614609 2:-7200908 MsaT006586.1:CDS
CAGATGGCTCGATTTCCCAT+GGG 0.616656 2:+7199843 None:intergenic
CAGGGAAAATCAGAAGCCGC+CGG 0.618202 2:+7199442 None:intergenic
GTCCCCGGTTATATGAGCTA+GGG 0.619100 2:-7199525 MsaT006586.1:CDS
TTTGCTACAAGCTCTTGTGA+AGG 0.621318 2:+7201251 None:intergenic
TTTAGGATTACAGCCAGCAG+AGG 0.626599 2:-7201274 MsaT006586.1:intron
ACACGACAGAAAACATGAGG+TGG 0.628496 2:+7202441 None:intergenic
ATAATAATAGGGTTTCCCCA+TGG 0.628746 2:-7199859 MsaT006586.1:CDS
TCCACGGGCCTCGTCAAACG+AGG 0.628825 2:+7199333 None:intergenic
GGAGGCATTTGCTCACAACT+GGG 0.631966 2:-7201084 MsaT006586.1:CDS
AGGGGTAATTGATGCTGATG+CGG 0.632870 2:-7201682 MsaT006586.1:CDS
CCCGGTTATATGAGCTAGGG+AGG 0.633034 2:-7199522 MsaT006586.1:CDS
TGCTCGGGTCCAGAAATGGA+TGG 0.638360 2:-7199276 MsaT006586.1:CDS
GATGACACACACATTGGCGG+AGG 0.638885 2:-7198875 MsaT006586.1:CDS
TGATGGCAGCTAGTTTGAAG+AGG 0.639010 2:-7199796 MsaT006586.1:CDS
GAGACTAGGGATTCGTAGGG+CGG 0.640641 2:-7200905 MsaT006586.1:CDS
GATAAAATAGGCTTGTGGGA+AGG 0.641991 2:+7199070 None:intergenic
CTTGTAGCAAAGGATCTGCA+TGG 0.646829 2:-7201239 MsaT006586.1:CDS
AGGATCTGCATGGCTCGGAG+TGG 0.652171 2:-7201229 MsaT006586.1:CDS
TCTAGTGGACTAGCTCTGGA+AGG 0.652449 2:-7199049 MsaT006586.1:CDS
AATTGCTGGAATAAGTGATG+TGG 0.654162 2:-7200439 MsaT006586.1:CDS
GGCATTTGCTCACAACTGGG+TGG 0.657268 2:-7201081 MsaT006586.1:CDS
CGGACGAGCCTCGTTTGACG+AGG 0.658321 2:-7199341 MsaT006586.1:CDS
CATACCAGAGGACCCTCCAA+AGG 0.666097 2:+7200861 None:intergenic
TCGTTGGAGCAGGACAGCCA+AGG 0.673661 2:-7201105 MsaT006586.1:intron
ATTGTTGTTTATGTTCCACA+AGG 0.675688 2:-7202510 MsaT006586.1:CDS
AGGATCCAATTGCATACCAG+AGG 0.675738 2:+7200849 None:intergenic
CAGTCTTCAGCAGCTCGACG+AGG 0.676991 2:+7201558 None:intergenic
AAATATCAGAATGCAGCCGG+CGG 0.679146 2:-7199458 MsaT006586.1:CDS
AGATGGCTCGATTTCCCATG+GGG 0.681877 2:+7199844 None:intergenic
AGAACACGACAGAAAACATG+AGG 0.684027 2:+7202438 None:intergenic
TTGGAGCAGGACAGCCAAGG+AGG 0.696098 2:-7201102 MsaT006586.1:intron
GCTTGTTCAAAGTGTCCTTG+TGG 0.696713 2:+7202495 None:intergenic
AAACAAACAGAACCTTGAGG+AGG 0.697531 2:+7202588 None:intergenic
AGAGTCTTGCAGAACATATG+GGG 0.705605 2:+7201621 None:intergenic
GAATTGGAAGCAGAACCAGA+TGG 0.706161 2:+7199827 None:intergenic
AATCGATCTCAACACTACAG+AGG 0.712921 2:-7202712 MsaT006586.1:CDS
CTCCCTAGCTCATATAACCG+GGG 0.726668 2:+7199523 None:intergenic
TCCAAACAAACAGAACCTTG+AGG 0.748977 2:+7202585 None:intergenic
AGGTTCCGGCATATATACAG+GGG 0.752458 2:-7201206 MsaT006586.1:intron
TCTGACACTAGCACTCATGG+AGG 0.799481 2:-7201591 MsaT006586.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 7198871 7202742 7198871 ID=MsaG006586
Chr2 mRNA 7198871 7202742 7198871 ID=MsaT006586.1;Parent=MsaG006586
Chr2 exon 7198871 7199655 7198871 ID=MsaT006586.1.exon10;Parent=MsaT006586.1
Chr2 CDS 7198871 7199655 7198871 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7199750 7199912 7199750 ID=MsaT006586.1.exon9;Parent=MsaT006586.1
Chr2 CDS 7199750 7199912 7199750 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7200398 7200473 7200398 ID=MsaT006586.1.exon8;Parent=MsaT006586.1
Chr2 CDS 7200398 7200473 7200398 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7200555 7200674 7200555 ID=MsaT006586.1.exon7;Parent=MsaT006586.1
Chr2 CDS 7200555 7200674 7200555 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7200781 7200945 7200781 ID=MsaT006586.1.exon6;Parent=MsaT006586.1
Chr2 CDS 7200781 7200945 7200781 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7201025 7201115 7201025 ID=MsaT006586.1.exon5;Parent=MsaT006586.1
Chr2 CDS 7201025 7201115 7201025 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7201207 7201291 7201207 ID=MsaT006586.1.exon4;Parent=MsaT006586.1
Chr2 CDS 7201207 7201291 7201207 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7201545 7201727 7201545 ID=MsaT006586.1.exon3;Parent=MsaT006586.1
Chr2 CDS 7201545 7201727 7201545 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7202070 7202126 7202070 ID=MsaT006586.1.exon2;Parent=MsaT006586.1
Chr2 CDS 7202070 7202126 7202070 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Chr2 exon 7202422 7202742 7202422 ID=MsaT006586.1.exon1;Parent=MsaT006586.1
Chr2 CDS 7202422 7202742 7202422 ID=cds.MsaT006586.1;Parent=MsaT006586.1
Gene Sequence

>MsaT006586.1

ATGGGGTTAATCGATCTCAACACTACAGAGGATGATGAAACACCATATTCAGCTATTTCTTCTTCATCTTCTTCTTCTCACTCTGGTATAAGCACTTCTGCTTCTGCAGCTATGGTTGTTCCTCCACCTCTTCCTCCTCAAGGTTCTGTTTGTTTGGAGCTATGGCATGCTTGTGCTGGTCCTTTGATCTCTTTACCAAAGAAAGGAAGCATTGTTGTTTATGTTCCACAAGGACACTTTGAACAAGCTCATGATTTTCCTGTTTCTGCTTGTAATATTCCACCTCATGTTTTCTGTCGTGTTCTTGATGTTAAGCTTCATGCTGAGGAAGGAAGTGATGAAGTGTATTGTCAAGTCTTGTTGGTTCCTGAAAATCAGCAAGTGGAGCAAAATGTTCGGGAAGGGGTAATTGATGCTGATGCGGAAGAGGAGGATACTGAAGCTATTGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTCACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCTGCTGAAGACTGCTTTCCTCCCCTGGATTACAGCCAGCAGAGGCCTTCACAAGAGCTTGTAGCAAAGGATCTGCATGGCTCGGAGTGGAGGTTCCGGCATATATACAGGGGACAGCCAAGGAGGCATTTGCTCACAACTGGGTGGAGTGCATTTGTTAATAAGAAGAAGCTTGTGTCTGGTGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGAGAACTGAGACTAGGGATTCGTAGGGCGGTGCAGTTGAAAAGTTCTGGTTCCTTTGGAGGGTCCTCTGGTATGCAATTGGATCCTGGCTCTCTCATGGATGTTGTGAATGCTTTATCTAAAAGATCTGCATTTAGTGTTTGCTATAATCCAAGGGTCAGTTCTTCGGAATTCATCATACCTGTCAACAAGTTCTTGAAGAGCCTTGATTGTTCTTATTCTGCTGGAATGAGGTTCAGGATGCGTTTTGAAACTGAAGATGCTGCAGAGCGAAGGTTCACTGGATTAATTGCTGGAATAAGTGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAAATGCCTATTGGTAAGGTGGGATGATATAGAGGCATCAAGGCATAATAATAGGGTTTCCCCATGGGAAATCGAGCCATCTGGTTCTGCTTCCAATTCCAGTAACCTGATGGCAGCTAGTTTGAAGAGGACCAGGATTGGATTTACTTCATCAAAGCTAGAATTTCCAGTTCCAAATGGGATTGGAGCGTCAGACTTTGGGGAATCATTAAGATTCCGAAAGGTCTTGCAAGGTCAAGAAATTATGGGCATGAATACTCCCTATGACAGTATTAATGCTCAAAGTCCCCGGTTATATGAGCTAGGGAGGTGCTATCCCGGTTCAAACTGTTCCGGGATTGCTGCAACAGGAAATATCAGAATGCAGCCGGCGGCTTCTGATTTTCCCTGTAACGGCATAGGCTTTGGTGAATCTTTCAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATTCTTCCGTGCCCACCCTACGGACGAGCCTCGTTTGACGAGGCCCGTGGAAGTGGTTGTGTTGGACGTTATGATGGTTATCCAATGCTCGGGTCCAGAAATGGATGGCCTGCACAGATGCATGACGCTGCTTCACATTTGCATGCATCTGTTACATCTGGACAAGTTTCGTCTCCATCATCTGTGTTAATGTTCCAGCAGGCTGTTAATCCAGTTTCAAACTCTCGGTATGATAATATTAATCTCAATCAGGGTTCATACATATCTGAAGCTAAAAGTGGAATGTTTGCGCCTTCCCACAAGCCTATTTTATCTAGTGGACTAGCTCTGGAAGGCACAACTTCTTTTGGTGTGCATGATTTTCATAATAATAATAATAATTTGTTGGATGGTTCAAGGTCTCGTGATTCAGTGTTAGCGATGAGAGACAATCAAGATATGGTTTCTTGTAAAACTGGCTGCAGACTCTTCGGGTTTTCATTAACCGATGACACACACATTGGCGGAGGTTGA

Protein sequence

>MsaT006586.1

MGLIDLNTTEDDETPYSAISSSSSSSHSGISTSASAAMVVPPPLPPQGSVCLELWHACAGPLISLPKKGSIVVYVPQGHFEQAHDFPVSACNIPPHVFCRVLDVKLHAEEGSDEVYCQVLLVPENQQVEQNVREGVIDADAEEEDTEAIVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGSEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAVQLKSSGSFGGSSGMQLDPGSLMDVVNALSKRSAFSVCYNPRVSSSEFIIPVNKFLKSLDCSYSAGMRFRMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWKCLLVRWDDIEASRHNNRVSPWEIEPSGSASNSSNLMAASLKRTRIGFTSSKLEFPVPNGIGASDFGESLRFRKVLQGQEIMGMNTPYDSINAQSPRLYELGRCYPGSNCSGIAATGNIRMQPAASDFPCNGIGFGESFRFQKVLQGQEILPCPPYGRASFDEARGSGCVGRYDGYPMLGSRNGWPAQMHDAASHLHASVTSGQVSSPSSVLMFQQAVNPVSNSRYDNINLNQGSYISEAKSGMFAPSHKPILSSGLALEGTTSFGVHDFHNNNNNLLDGSRSRDSVLAMRDNQDMVSCKTGCRLFGFSLTDDTHIGGG*