AlfalfaGEDB | MsaG006685

M. sativa ssp. caerulea / MsaG006685

KEGG: K14502
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006685	XP_013462587.1	100.000	380	0	0	1	380	1	380	0.0	795

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006685	sp\|Q39011\|KSG7_ARATH	89.211	380	41	0	1	380	1	380	0.0	731

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006685	tr\|I3SJN2\|I3SJN2_MEDTR	100.000	380	0	0	1	380	1	380	0.0	795

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006053	MsaG006685	0.804161	4.160835e-49	6.186544e-47
MsaG006685	MsaG028255	0.828569	1.496239e-54	4.157571e-52
MsaG006685	MsaG034436	0.812781	6.137173e-51	1.122123e-48
MsaG006685	MsaG040696	0.801099	1.769447e-48	2.452403e-46

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006685	MtrunA17_Chr2g0284091	100.000	380	0	0	1	380	1	380	0.0	795
MsaG006685	MtrunA17_Chr2g0320011	90.107	374	37	0	1	374	49	422	0.0	730
MsaG006685	MtrunA17_Chr7g0270371	75.936	374	88	2	1	372	35	408	0.0	618
MsaG006685	MtrunA17_Chr1g0193081	75.946	370	88	1	1	369	36	405	0.0	617
MsaG006685	MtrunA17_Chr1g0194201	74.799	373	93	1	1	372	36	408	0.0	613
MsaG006685	MtrunA17_Chr7g0246591	72.603	365	99	1	4	367	105	469	0.0	595
MsaG006685	MtrunA17_Chr8g0350311	73.151	365	97	1	4	367	103	467	0.0	594
MsaG006685	MtrunA17_Chr2g0277011	71.311	366	104	1	5	369	55	420	0.0	586
MsaG006685	MtrunA17_Chr4g0030231	35.577	312	183	7	46	348	46	348	7.30e-58	192
MsaG006685	MtrunA17_Chr4g0045841	35.669	314	179	9	46	348	61	362	5.97e-57	191

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
MsaG006685	AT4G18710.1	89.211	380	41	0	1	380	1	380	731
MsaG006685	AT2G30980.1	86.807	379	50	0	1	379	33	411	711
MsaG006685	AT1G06390.2	87.467	375	45	1	1	373	31	405	708
MsaG006685	AT1G06390.1	87.467	375	45	1	1	373	31	405	708
MsaG006685	AT5G14640.1	79.730	370	74	1	1	369	35	404	640
MsaG006685	AT5G14640.2	79.730	370	74	1	1	369	35	404	640
MsaG006685	AT3G05840.2	77.568	370	82	1	1	369	34	403	631
MsaG006685	AT3G05840.1	77.568	370	82	1	1	369	34	403	631
MsaG006685	AT5G26751.1	77.568	370	82	1	1	369	30	399	626
MsaG006685	AT4G00720.1	75.137	366	90	1	3	367	101	466	613

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Find 98 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGCACACCCATGGCACA+AGG	0.636924	2:+8414086	MsaT006685.1:CDS
AAAATGCTTGGAAACTGGAG+AGG	0.672448	2:+8412672	MsaT006685.1:CDS
AAACCTGAAGTCATTGTAAT+TGG	0.193382	2:-8414055	None:intergenic
AAATCCCTGTGGCAAACTCC+GGG	0.516072	2:-8413059	None:intergenic
AACCTGAAGTCATTGTAATT+GGG	0.451494	2:-8414054	None:intergenic
AAGACTCGGTACATGGATTC+TGG	0.277843	2:-8412856	None:intergenic
AAGATGCAGACCTTGTGCCA+TGG	0.609718	2:-8414096	None:intergenic
AAGCTATTGATCTTGCTTCC+CGG	0.379271	2:+8414237	MsaT006685.1:CDS
AAGTACCTTATCCTCAGACA+TGG	0.650908	2:-8411255	None:intergenic
AATGGGAACGATTCCCTCAC+TGG	0.503846	2:+8412320	MsaT006685.1:CDS

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	8411257	8414914	8411257	ID=MsaG006685
Chr2	mRNA	8411257	8414914	8411257	ID=MsaT006685.1;Parent=MsaG006685
Chr2	exon	8411257	8411271	8411257	ID=MsaT006685.1.exon1;Parent=MsaT006685.1
Chr2	CDS	8411257	8411271	8411257	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8412299	8412391	8412299	ID=MsaT006685.1.exon2;Parent=MsaT006685.1
Chr2	CDS	8412299	8412391	8412299	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8412530	8412589	8412530	ID=MsaT006685.1.exon3;Parent=MsaT006685.1
Chr2	CDS	8412530	8412589	8412530	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8412670	8412942	8412670	ID=MsaT006685.1.exon4;Parent=MsaT006685.1
Chr2	CDS	8412670	8412942	8412670	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8413026	8413100	8413026	ID=MsaT006685.1.exon5;Parent=MsaT006685.1
Chr2	CDS	8413026	8413100	8413026	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8413202	8413258	8413202	ID=MsaT006685.1.exon6;Parent=MsaT006685.1
Chr2	CDS	8413202	8413258	8413202	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8413698	8413838	8413698	ID=MsaT006685.1.exon7;Parent=MsaT006685.1
Chr2	CDS	8413698	8413838	8413698	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8413961	8414107	8413961	ID=MsaT006685.1.exon8;Parent=MsaT006685.1
Chr2	CDS	8413961	8414107	8413961	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8414212	8414295	8414212	ID=MsaT006685.1.exon9;Parent=MsaT006685.1
Chr2	CDS	8414212	8414295	8414212	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8414437	8414538	8414437	ID=MsaT006685.1.exon10;Parent=MsaT006685.1
Chr2	CDS	8414437	8414538	8414437	ID=cds.MsaT006685.1;Parent=MsaT006685.1
Chr2	exon	8414819	8414914	8414819	ID=MsaT006685.1.exon11;Parent=MsaT006685.1
Chr2	CDS	8414819	8414914	8414819	ID=cds.MsaT006685.1;Parent=MsaT006685.1

Gene Sequence

>MsaT006685.1

ATGTCTGAGGATAAGGAGATGTCTACTTCTGTTATCAATGGGAACGATTCCCTCACTGGTCACATTATATCTACAACAATTGGAGGCAAAAATGGAGAACCAAAACAGACTATTAGTTACATGGCAGAGCGTGTCGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCTTGGAAACTGGAGAGGCAGTAGCCATCAAGAAGGTTTTGCAAGACCGAAGATATAAGAACCGTGAACTACAATTGATGCGTGTGATGGACCATCCAAATGTGGTCACTCTGAAGCATTGTTTCTTTTCAACTACAAGTACGGACGAACTTTTTCTGAATTTGGTGATGGAATATGTTCCAGAATCCATGTACCGAGTCTTAAAGCACTATAACAATGCTAATCAAAGAATACCGATCATCTATGTAAAACTTTATATGTACCAGATCTTCAGGGGGTTGGCTTATATCCACACTGTTCCCGGAGTTTGCCACAGGGATTTGAAACCTCAAAATATATTGGTTGATCCTCTCTCACATCAAGTTAAGCTATGTGATTTTGGAAGTGCTAAAATGCTGGTCAAGGGTGAAGCTAATATATCATACATATGTTCTCGTTTCTATCGAGCTCCAGAACTTATATTTGGCGCCACAGAGTATACTACTTCAATTGATATCTGGTCAGCTGGATGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCGTTATTCCCTGGTGAAAATGCAGTGGACCAGCTCGTACATATTATAAAGGTGCTTGGAACACCCACCCGGGAGGAAGTACGCTGCATGAATCCCAATTACAATGACTTCAGGTTTCCGCAAATAAAAGCACACCCATGGCACAAGATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAGTACTCCCCAAGTCTTCGTTGCACTGCGCTTGAAGCTTGTGCACATCCTTTCTTTGATGAACTTCGAGAACCCAATGCTCGCCTGCCAAATGGCCGTCCTTTTCCCCCTCTTTTCAACTTCAAACAGGAATTATCAGGGGCATCTCCAGAGCTTGTTAATAAGTTGATACCTGATCACATAAAGCGGCAAATAGGGCTACAATTTGTCCAATCAGTCGGATCATGA

Protein sequence

>MsaT006685.1

MSEDKEMSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGEAVAIKKVLQDRRYKNRELQLMRVMDHPNVVTLKHCFFSTTSTDELFLNLVMEYVPESMYRVLKHYNNANQRIPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLSHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNDFRFPQIKAHPWHKIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNARLPNGRPFPPLFNFKQELSGASPELVNKLIPDHIKRQIGLQFVQSVGS*