AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006702

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006702 MtrunA17_Chr2g0284321 95.045 222 3 2 1 220 1 216 5.22e-155 428
MsaG006702 MtrunA17_Chr8g0379461 53.769 199 63 7 11 197 46 227 4.33e-62 194
MsaG006702 MtrunA17_Chr2g0319961 51.980 202 80 6 7 194 47 245 1.52e-59 187
MsaG006702 MtrunA17_Chr7g0248691 60.440 91 30 1 9 99 134 218 2.50e-33 122
MsaG006702 MtrunA17_Chr8g0348311 50.000 126 49 3 4 121 129 248 8.90e-33 120
MsaG006702 MtrunA17_Chr2g0293481 50.769 130 48 3 11 124 239 368 1.19e-32 122
MsaG006702 MtrunA17_Chr7g0270051 52.252 111 48 3 9 116 24 132 5.04e-32 117
MsaG006702 MtrunA17_Chr8g0387501 76.562 64 15 0 36 99 130 193 1.55e-31 116
MsaG006702 MtrunA17_Chr5g0401821 54.945 91 40 1 4 94 169 258 1.36e-28 108
MsaG006702 MtrunA17_Chr1g0147881 54.762 84 37 1 11 94 239 321 8.80e-28 107
MsaG006702 MtrunA17_Chr1g0202461 72.308 65 18 0 35 99 261 325 2.19e-27 107
MsaG006702 MtrunA17_Chr4g0053281 55.172 87 37 2 9 94 240 325 2.26e-27 106
MsaG006702 MtrunA17_Chr4g0071521 56.471 85 36 1 9 93 220 303 2.89e-27 105
MsaG006702 MtrunA17_Chr1g0184691 55.294 85 37 1 12 96 271 354 2.95e-26 103
MsaG006702 MtrunA17_Chr7g0228941 64.407 59 21 0 34 92 51 109 3.81e-25 95.5
MsaG006702 MtrunA17_Chr3g0139021 51.163 86 41 1 11 96 291 375 3.90e-24 98.6
MsaG006702 MtrunA17_Chr2g0289181 59.677 62 25 0 34 95 13 74 3.71e-22 90.5
MsaG006702 MtrunA17_Chr3g0099641 58.065 62 26 0 35 96 251 312 2.52e-19 85.5
MsaG006702 MtrunA17_Chr7g0218081 42.017 119 50 4 11 116 375 487 5.44e-19 84.7
MsaG006702 MtrunA17_Chr7g0218081 43.182 88 47 3 31 118 224 308 1.36e-14 72.0
MsaG006702 MtrunA17_Chr7g0270831 56.452 62 27 0 35 96 216 277 7.00e-19 84.3
MsaG006702 MtrunA17_Chr4g0051881 56.667 60 25 1 36 95 179 237 7.51e-19 83.6
MsaG006702 MtrunA17_Chr5g0443131 55.000 60 26 1 36 95 158 216 1.01e-18 82.8
MsaG006702 MtrunA17_Chr2g0288871 56.452 62 27 0 35 96 305 366 1.11e-18 84.0
MsaG006702 MtrunA17_Chr2g0302391 55.738 61 27 0 36 96 212 272 1.31e-18 83.6
MsaG006702 MtrunA17_Chr7g0263531 53.846 78 30 3 36 113 362 433 4.28e-18 82.0
MsaG006702 MtrunA17_Chr7g0263531 49.206 63 30 2 33 95 187 247 2.04e-14 71.2
MsaG006702 MtrunA17_Chr3g0079691 38.596 114 65 4 32 142 277 388 4.33e-18 82.4
MsaG006702 MtrunA17_Chr3g0079691 41.053 95 46 3 36 121 496 589 9.58e-15 72.8
MsaG006702 MtrunA17_Chr2g0322391 54.839 62 28 0 35 96 349 410 6.10e-18 82.0
MsaG006702 MtrunA17_Chr5g0418191 47.500 80 40 2 36 114 321 399 7.03e-18 81.3
MsaG006702 MtrunA17_Chr5g0418191 32.520 123 80 3 33 155 149 268 2.09e-15 74.3
MsaG006702 MtrunA17_Chr5g0418781 54.688 64 27 2 36 98 125 187 7.25e-18 80.1
MsaG006702 MtrunA17_Chr4g0042831 47.561 82 40 2 36 115 279 359 7.86e-18 80.9
MsaG006702 MtrunA17_Chr4g0042831 35.246 122 68 3 7 126 125 237 1.00e-12 66.2
MsaG006702 MtrunA17_Chr4g0060271 52.459 61 29 0 35 95 255 315 6.75e-17 79.0
MsaG006702 MtrunA17_Chr4g0075201 51.613 62 30 0 35 96 267 328 7.39e-17 78.6
MsaG006702 MtrunA17_Chr4g0025051 52.459 61 29 0 35 95 335 395 7.55e-17 78.6
MsaG006702 MtrunA17_Chr4g0025061 50.000 64 32 0 32 95 357 420 9.86e-17 78.6
MsaG006702 MtrunA17_Chr5g0445311 50.794 63 30 1 36 98 365 426 1.08e-16 78.2
MsaG006702 MtrunA17_Chr5g0445311 36.449 107 65 3 36 142 201 304 3.63e-14 70.9
MsaG006702 MtrunA17_Chr1g0194481 48.333 60 30 1 36 95 159 217 1.75e-16 76.6
MsaG006702 MtrunA17_Chr3g0101131 50.000 64 31 1 36 99 416 478 1.85e-16 77.4
MsaG006702 MtrunA17_Chr3g0101131 34.579 107 66 4 36 142 244 346 9.00e-11 60.8
MsaG006702 MtrunA17_Chr1g0150281 49.123 57 29 0 36 92 141 197 2.95e-16 75.5
MsaG006702 MtrunA17_Chr4g0051181 52.459 61 29 0 35 95 243 303 3.05e-16 76.6
MsaG006702 MtrunA17_Chr3g0106491 43.158 95 51 2 14 106 342 435 4.88e-16 76.3
MsaG006702 MtrunA17_Chr3g0106491 40.909 110 59 5 36 143 199 304 2.03e-13 68.6
MsaG006702 MtrunA17_Chr5g0432161 52.381 63 29 1 36 98 422 483 5.73e-16 76.3
MsaG006702 MtrunA17_Chr5g0432161 48.333 60 29 2 36 95 245 302 1.54e-11 63.2
MsaG006702 MtrunA17_Chr7g0270191 51.667 60 28 1 36 95 146 204 8.06e-16 74.7
MsaG006702 MtrunA17_Chr7g0249301 55.000 60 25 2 36 95 63 120 8.84e-16 75.1
MsaG006702 MtrunA17_Chr7g0249301 50.794 63 30 1 36 98 293 354 7.27e-15 72.4
MsaG006702 MtrunA17_Chr7g0238921 40.000 105 56 3 36 134 125 228 1.35e-15 74.3
MsaG006702 MtrunA17_Chr4g0068541 48.333 60 30 1 36 95 209 267 1.35e-15 74.7
MsaG006702 MtrunA17_Chr7g0216891 53.448 58 27 0 35 92 219 276 1.47e-15 75.1
MsaG006702 MtrunA17_Chr1g0150271 46.667 60 32 0 36 95 102 161 2.63e-15 72.4
MsaG006702 MtrunA17_Chr3g0136961 43.056 72 41 0 36 107 139 210 2.97e-15 72.8
MsaG006702 MtrunA17_Chr7g0249311 48.052 77 34 2 36 112 393 463 3.21e-15 73.9
MsaG006702 MtrunA17_Chr7g0249311 48.611 72 34 3 24 95 169 237 9.20e-15 72.8
MsaG006702 MtrunA17_Chr6g0485431 51.613 62 28 2 35 95 154 214 3.68e-15 73.2
MsaG006702 MtrunA17_Chr4g0001361 42.857 70 40 0 27 96 154 223 4.49e-15 72.8
MsaG006702 MtrunA17_Chr7g0275531 46.479 71 32 2 36 100 119 189 1.59e-14 71.2
MsaG006702 MtrunA17_Chr4g0074001 47.619 63 32 1 36 98 360 421 2.86e-14 71.2
MsaG006702 MtrunA17_Chr2g0294231 46.667 60 31 1 36 95 204 262 3.14e-14 70.9
MsaG006702 MtrunA17_Chr2g0333851 45.000 60 33 0 36 95 170 229 3.64e-14 70.1
MsaG006702 MtrunA17_Chr8g0347251 30.827 133 83 3 9 134 110 240 4.97e-14 70.1
MsaG006702 MtrunA17_Chr3g0126391 50.000 60 28 1 33 90 131 190 5.57e-14 69.7
MsaG006702 MtrunA17_Chr3g0129321 48.333 60 30 1 36 95 119 177 6.02e-14 68.2
MsaG006702 MtrunA17_Chr8g0387981 31.724 145 86 4 9 146 106 244 8.04e-14 69.3
MsaG006702 MtrunA17_Chr4g0004911 49.206 63 31 1 36 98 337 398 8.64e-14 69.7
MsaG006702 MtrunA17_Chr5g0447701 50.000 60 29 1 36 95 253 311 1.10e-13 69.3
MsaG006702 MtrunA17_Chr5g0447701 48.333 60 29 2 36 95 93 150 6.09e-11 61.2
MsaG006702 MtrunA17_Chr1g0189391 55.932 59 24 2 36 93 98 155 1.13e-13 68.9
MsaG006702 MtrunA17_Chr1g0188941 38.298 94 48 2 4 97 29 112 1.18e-13 65.1
MsaG006702 MtrunA17_Chr1g0150801 49.123 57 28 1 36 92 103 158 2.36e-13 65.5
MsaG006702 MtrunA17_Chr7g0243891 47.619 63 32 1 36 98 375 436 3.44e-13 67.8
MsaG006702 MtrunA17_Chr7g0243891 45.588 68 33 3 36 103 217 280 5.83e-12 64.3
MsaG006702 MtrunA17_Chr5g0428351 35.433 127 69 5 36 152 184 307 4.97e-13 67.0
MsaG006702 MtrunA17_Chr4g0024391 45.312 64 35 0 32 95 226 289 6.09e-13 67.0
MsaG006702 MtrunA17_Chr8g0383351 46.552 58 30 1 36 93 161 217 1.13e-12 65.1
MsaG006702 MtrunA17_Chr3g0129361 46.552 58 30 1 36 93 145 201 1.49e-12 64.3
MsaG006702 MtrunA17_Chr8g0335811 48.276 58 29 1 36 93 155 211 1.83e-12 64.3
MsaG006702 MtrunA17_Chr8g0383251 45.000 60 32 1 36 95 109 167 1.95e-12 63.5
MsaG006702 MtrunA17_Chr7g0224801 44.068 59 32 1 36 94 94 151 4.76e-12 62.0
MsaG006702 MtrunA17_Chr7g0248721 47.368 57 28 2 36 92 142 196 2.75e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006702 AT1G29280.1 48.214 224 94 7 4 208 38 258 1.41e-57 183
MsaG006702 AT3G58710.2 45.714 210 89 6 11 197 41 248 9.43e-49 160
MsaG006702 AT3G58710.1 45.455 209 89 6 12 197 43 249 4.11e-48 159
MsaG006702 AT2G34830.2 60.577 104 31 2 6 99 185 288 5.06e-33 123
MsaG006702 AT2G34830.1 60.577 104 31 2 6 99 176 279 5.94e-33 123
MsaG006702 AT4G01250.1 44.000 150 69 3 7 155 105 240 2.26e-32 119
MsaG006702 AT1G30650.1 61.290 93 32 1 11 99 189 281 3.28e-31 119
MsaG006702 AT4G23550.1 49.612 129 54 4 16 143 126 244 1.57e-30 114
MsaG006702 AT5G52830.1 49.153 118 50 3 9 125 144 252 6.12e-30 114
MsaG006702 AT2G23320.1 53.488 86 39 1 9 94 215 299 4.27e-29 111
MsaG006702 AT4G24240.1 56.977 86 36 1 9 94 256 340 7.95e-28 108
MsaG006702 AT5G45050.2 55.914 93 36 1 7 99 1129 1216 1.03e-26 107
MsaG006702 AT2G30590.1 56.098 82 35 1 11 92 290 370 1.11e-26 105
MsaG006702 AT5G45050.1 55.914 93 36 1 7 99 1157 1244 1.19e-26 107
MsaG006702 AT5G45050.4 55.914 93 36 1 7 99 1018 1105 1.41e-26 107
MsaG006702 AT4G31550.2 54.878 82 36 1 11 92 222 302 2.45e-26 103
MsaG006702 AT4G31550.1 54.321 81 36 1 12 92 224 303 1.09e-25 102
MsaG006702 AT3G04670.1 51.648 91 43 1 3 93 231 320 2.21e-25 101
MsaG006702 AT2G24570.1 54.321 81 36 1 12 92 221 300 4.18e-25 100
MsaG006702 AT5G28650.1 50.549 91 44 1 3 93 231 320 5.87e-25 100
MsaG006702 AT5G46350.1 51.220 82 39 1 36 117 184 264 1.65e-21 90.9
MsaG006702 AT2G04880.1 44.828 87 45 2 36 120 308 393 1.79e-19 86.7
MsaG006702 AT2G04880.2 44.828 87 45 2 36 120 284 369 2.02e-19 86.3
MsaG006702 AT4G18170.1 56.667 60 25 1 36 95 173 231 5.18e-19 84.0
MsaG006702 AT4G04450.2 56.452 62 27 0 35 96 198 259 5.26e-19 85.1
MsaG006702 AT4G04450.1 56.452 62 27 0 35 96 292 353 7.50e-19 84.7
MsaG006702 AT1G62300.1 54.839 62 28 0 35 96 312 373 1.32e-18 84.3
MsaG006702 AT4G22070.4 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
MsaG006702 AT4G22070.3 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
MsaG006702 AT4G22070.2 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
MsaG006702 AT4G22070.1 54.839 62 28 0 35 96 297 358 2.07e-18 83.6
MsaG006702 AT1G29860.1 53.333 60 27 1 36 95 137 195 2.35e-18 81.6
MsaG006702 AT5G45260.1 45.833 96 43 3 17 110 1197 1285 2.63e-18 83.6
MsaG006702 AT4G01720.1 53.846 65 30 0 32 96 236 300 1.67e-17 80.9
MsaG006702 AT2G40740.1 42.424 99 49 2 1 91 133 231 2.27e-17 79.3
MsaG006702 AT2G40740.3 42.857 98 48 2 1 90 142 239 2.51e-17 79.3
MsaG006702 AT2G03340.1 42.574 101 43 3 11 98 379 477 5.53e-17 79.3
MsaG006702 AT2G03340.1 41.379 87 44 3 28 114 243 322 3.72e-14 71.2
MsaG006702 AT1G68150.1 53.333 60 28 0 36 95 236 295 1.42e-16 77.8
MsaG006702 AT4G31800.2 41.250 80 46 1 16 95 93 171 3.02e-16 75.5
MsaG006702 AT1G18860.1 52.459 61 29 0 35 95 239 299 3.43e-16 77.0
MsaG006702 AT4G31800.1 45.455 66 36 0 30 95 171 236 4.93e-16 75.9
MsaG006702 AT5G15130.1 50.820 61 30 0 35 95 227 287 5.09e-16 76.6
MsaG006702 AT5G15130.2 50.820 61 30 0 35 95 185 245 5.40e-16 76.6
MsaG006702 AT5G07100.2 49.206 63 31 1 36 98 142 203 8.11e-16 73.6
MsaG006702 AT5G07100.2 30.252 119 74 3 27 139 16 131 8.11e-11 60.1
MsaG006702 AT5G07100.4 49.206 63 31 1 36 98 142 203 8.11e-16 73.6
MsaG006702 AT5G07100.4 30.252 119 74 3 27 139 16 131 8.11e-11 60.1
MsaG006702 AT5G07100.5 49.206 63 31 1 36 98 142 203 8.11e-16 73.6
MsaG006702 AT5G07100.5 30.252 119 74 3 27 139 16 131 8.11e-11 60.1
MsaG006702 AT5G07100.3 49.206 63 31 1 36 98 142 203 8.11e-16 73.6
MsaG006702 AT5G07100.3 30.252 119 74 3 27 139 16 131 8.11e-11 60.1
MsaG006702 AT4G26440.1 45.000 80 41 3 33 112 176 252 9.04e-16 75.9
MsaG006702 AT4G26440.1 48.438 64 32 1 36 99 373 435 4.33e-14 70.9
MsaG006702 AT5G26170.1 50.000 58 28 1 36 93 114 170 9.11e-16 72.8
MsaG006702 AT1G13960.1 51.667 60 28 1 36 95 410 468 9.27e-16 75.9
MsaG006702 AT1G13960.1 38.384 99 58 3 10 108 204 299 1.50e-14 72.4
MsaG006702 AT1G13960.2 51.667 60 28 1 36 95 257 315 9.91e-16 75.5
MsaG006702 AT1G13960.2 44.872 78 40 3 31 108 72 146 1.83e-14 71.6
MsaG006702 AT2G25000.2 45.455 66 36 0 30 95 98 163 1.53e-15 73.2
MsaG006702 AT2G25000.4 45.455 66 36 0 30 95 98 163 1.53e-15 73.2
MsaG006702 AT4G30935.1 47.619 63 32 1 36 98 332 393 1.71e-15 75.1
MsaG006702 AT2G37260.2 43.678 87 48 1 8 94 240 325 2.12e-15 74.3
MsaG006702 AT2G37260.2 48.333 60 29 2 36 95 84 141 1.39e-11 63.2
MsaG006702 AT2G37260.3 43.678 87 48 1 8 94 242 327 2.14e-15 74.3
MsaG006702 AT2G37260.3 48.333 60 29 2 36 95 86 143 1.36e-11 63.2
MsaG006702 AT4G23810.1 32.847 137 86 2 6 140 129 261 2.37e-15 73.9
MsaG006702 AT2G47260.1 48.333 60 30 1 36 95 175 233 2.42e-15 73.9
MsaG006702 AT5G49520.1 50.000 60 29 1 36 95 222 280 2.51e-15 74.3
MsaG006702 AT2G37260.1 43.678 87 48 1 8 94 322 407 2.72e-15 74.3
MsaG006702 AT2G37260.1 48.333 60 29 2 36 95 166 223 1.22e-11 63.5
MsaG006702 AT5G07100.1 49.206 63 31 1 36 98 235 296 2.74e-15 73.6
MsaG006702 AT2G38470.1 50.794 63 30 1 36 98 363 424 2.83e-15 74.3
MsaG006702 AT2G38470.1 46.667 60 30 2 36 95 185 242 1.99e-11 63.2
MsaG006702 AT3G01080.2 51.667 60 28 1 36 95 345 403 2.89e-15 74.3
MsaG006702 AT3G01080.2 47.059 68 34 2 31 98 201 266 1.33e-13 69.3
MsaG006702 AT4G11070.2 40.426 94 52 2 8 97 82 175 3.22e-15 73.2
MsaG006702 AT3G01080.1 51.667 60 28 1 36 95 307 365 3.72e-15 73.9
MsaG006702 AT3G01080.1 47.059 68 34 2 31 98 163 228 1.42e-13 69.3
MsaG006702 AT2G25000.3 45.455 66 36 0 30 95 120 185 3.73e-15 72.4
MsaG006702 AT4G11070.1 40.426 94 52 2 8 97 114 207 3.74e-15 73.2
MsaG006702 AT4G26640.5 50.000 60 29 1 36 95 206 264 3.95e-15 73.6
MsaG006702 AT4G26640.5 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
MsaG006702 AT4G26640.6 50.000 60 29 1 36 95 206 264 3.95e-15 73.6
MsaG006702 AT4G26640.6 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
MsaG006702 AT4G26640.4 50.000 60 29 1 36 95 206 264 3.95e-15 73.6
MsaG006702 AT4G26640.4 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
MsaG006702 AT4G26640.3 50.000 60 29 1 36 95 206 264 3.95e-15 73.6
MsaG006702 AT4G26640.3 45.161 62 32 2 36 97 36 95 5.40e-11 61.6
MsaG006702 AT4G26640.2 50.000 60 29 1 36 95 382 440 4.02e-15 73.9
MsaG006702 AT4G26640.2 45.161 62 32 2 36 97 212 271 5.85e-11 62.0
MsaG006702 AT4G26640.1 50.000 60 29 1 36 95 310 368 4.08e-15 73.9
MsaG006702 AT4G26640.1 45.161 62 32 2 36 97 140 199 5.99e-11 61.6
MsaG006702 AT2G25000.1 45.455 66 36 0 30 95 141 206 4.18e-15 72.8
MsaG006702 AT4G26640.7 50.000 60 29 1 36 95 342 400 4.37e-15 73.9
MsaG006702 AT4G26640.7 45.161 62 32 2 36 97 172 231 7.00e-11 61.6
MsaG006702 AT2G21900.1 41.860 86 43 2 16 95 84 168 4.96e-15 71.2
MsaG006702 AT3G62340.1 45.455 77 38 2 36 109 119 194 5.14e-15 72.4
MsaG006702 AT1G80840.1 34.615 104 67 1 15 117 125 228 5.93e-15 72.8
MsaG006702 AT1G69310.4 49.153 59 29 1 36 94 148 205 6.42e-15 72.4
MsaG006702 AT1G69310.2 49.153 59 29 1 36 94 148 205 6.42e-15 72.4
MsaG006702 AT1G69310.1 49.153 59 29 1 36 94 148 205 6.42e-15 72.4
MsaG006702 AT1G69810.1 50.000 62 30 1 35 95 203 264 6.74e-15 73.2
MsaG006702 AT1G69810.2 50.000 62 30 1 35 95 145 206 1.06e-14 72.0
MsaG006702 AT5G56270.1 49.206 63 31 1 36 98 488 549 3.98e-14 71.2
MsaG006702 AT5G56270.1 47.692 65 32 2 33 97 271 333 1.72e-13 69.3
MsaG006702 AT3G01970.1 46.774 62 32 1 36 97 66 126 1.20e-13 66.2
MsaG006702 AT3G01080.3 47.692 65 32 2 31 95 201 263 1.23e-13 68.9
MsaG006702 AT1G64000.1 49.123 57 28 1 36 92 115 170 2.32e-13 66.6
MsaG006702 AT1G55600.1 36.782 87 50 2 10 96 286 367 5.48e-13 67.8
MsaG006702 AT2G30250.1 48.333 60 30 1 36 95 329 387 5.95e-13 67.4
MsaG006702 AT5G41570.1 49.123 57 28 1 36 92 99 154 9.48e-13 64.7
MsaG006702 AT1G66560.1 52.542 59 26 1 34 90 102 160 9.98e-13 65.9
MsaG006702 AT2G46130.1 47.368 57 29 1 36 92 31 86 1.58e-12 62.4
MsaG006702 AT2G46400.1 40.000 80 45 2 28 104 97 176 1.78e-12 65.5
MsaG006702 AT2G44745.1 49.123 57 28 1 36 92 146 201 2.27e-12 64.3
MsaG006702 AT5G13080.1 44.068 59 32 1 36 94 68 125 2.27e-12 62.8
MsaG006702 AT1G80590.1 39.130 92 50 2 5 90 51 142 2.67e-12 64.3
MsaG006702 AT5G43290.1 38.542 96 48 2 1 96 90 174 5.51e-12 63.9
MsaG006702 AT3G56400.1 35.802 81 48 2 12 90 99 177 5.52e-12 64.3
MsaG006702 AT5G01900.1 40.244 82 46 2 12 90 86 167 1.13e-11 62.8
MsaG006702 AT5G24110.1 43.750 64 34 1 29 90 107 170 1.42e-11 63.2
MsaG006702 AT4G39410.1 46.552 58 30 1 36 93 224 280 2.14e-11 62.4
MsaG006702 AT1G66550.2 32.374 139 84 5 5 136 70 205 2.39e-11 62.0
MsaG006702 AT1G66550.1 37.383 107 60 4 34 136 107 210 7.72e-11 60.5

Find 71 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCGGATGGTTTGGAGATT+TGG 0.234761 2:+8639563 MsaT006702.1:CDS
CACTCTCTTCTTCTGCTAAA+AGG 0.248402 2:+8638621 MsaT006702.1:CDS
TCGGGTTCTTGTTCTTGTTC+TGG 0.268469 2:-8639486 None:intergenic
TCTTGTTCTTGTTCTGGTTC+AGG 0.273307 2:-8639480 None:intergenic
CTGGTGTTGCGGTAGTTTCT+TGG 0.299051 2:-8639420 None:intergenic
CGGAGTGTTCGACGGTGTTT+TGG 0.329073 2:+8639694 MsaT006702.1:CDS
TGGATAAGGGGAACCTTTGA+TGG 0.364500 2:-8638964 None:intergenic
GTTTGATGCGGTGTTGTTGC+TGG 0.368100 2:-8639439 None:intergenic
GTCCCTTCCACATTCTTCAT+TGG 0.371466 2:-8638891 None:intergenic
TGCCGATCTCGGAGAGTTGC+CGG 0.372131 2:+8639674 MsaT006702.1:CDS
TCATGGGCTTGGAGAAAGTA+TGG 0.382534 2:+8638933 MsaT006702.1:CDS
GAGAATGAATACCTTGGATA+AGG 0.400647 2:-8638978 None:intergenic
CACCGTCTGATTCATGGGCT+TGG 0.402885 2:+8638922 MsaT006702.1:CDS
CACTCCACCGTCTGATTCAT+GGG 0.406966 2:+8638917 MsaT006702.1:CDS
ACACTCCACCGTCTGATTCA+TGG 0.409389 2:+8638916 MsaT006702.1:CDS
AGAATGAATACCTTGGATAA+GGG 0.413010 2:-8638977 None:intergenic
TAGGCGAGGTATAAAGAAAA+GGG 0.417404 2:+8638857 MsaT006702.1:intron
ATGTCGTTGTTTGCCGATCT+CGG 0.427384 2:+8639663 MsaT006702.1:CDS
AGTGTCTATGTTGGGAGAAG+AGG 0.434526 2:+8639638 MsaT006702.1:CDS
GATGAGTTAGGCGGATGGTT+TGG 0.439520 2:+8639555 MsaT006702.1:CDS
ATAGGCGAGGTATAAAGAAA+AGG 0.449369 2:+8638856 MsaT006702.1:intron
AGGAGGAGTGGTGCCGGCGC+CGG 0.456828 2:+8639723 MsaT006702.1:CDS
CGGATGGTTTGGAGATTTGG+AGG 0.482813 2:+8639566 MsaT006702.1:CDS
TTGCGGTAGTTTCTTGGTGG+TGG 0.484307 2:-8639414 None:intergenic
GATATTCGTAAACGTTTCAT+CGG 0.485537 2:-8639505 None:intergenic
GAGAAGGAAGTGTCTATGTT+GGG 0.500215 2:+8639630 MsaT006702.1:CDS
ATATTCGTAAACGTTTCATC+GGG 0.505400 2:-8639504 None:intergenic
TGGCACGGCGTGGTTGTGAT+CGG 0.521456 2:-8639394 None:intergenic
TTCTGAGTCTTTGTTTGATG+CGG 0.524236 2:-8639451 None:intergenic
ATCGGACACTCCAACACTGC+CGG 0.524605 2:-8639600 None:intergenic
GATCGGATCGCCGGCAGTGT+TGG 0.529018 2:+8639590 MsaT006702.1:CDS
ATTGCCACCGGTGATGAGTT+AGG 0.530483 2:+8639543 MsaT006702.1:CDS
AGGAGTGGTGCCGGCGCCGG+TGG 0.532501 2:+8639726 MsaT006702.1:CDS
GTAGTTTCTTGGTGGTGGCA+CGG 0.532781 2:-8639409 None:intergenic
GGAGAAGGAAGTGTCTATGT+TGG 0.533402 2:+8639629 MsaT006702.1:CDS
AGAGGTAGGAGGAGTGGTGC+CGG 0.538061 2:+8639717 MsaT006702.1:CDS
TTTGGAGATTTGGAGGCGAT+CGG 0.544302 2:+8639573 MsaT006702.1:CDS
GGATAAGGGGAACCTTTGAT+GGG 0.548989 2:-8638963 None:intergenic
GTGTTGCGGTAGTTTCTTGG+TGG 0.552712 2:-8639417 None:intergenic
TTTGGAGGCGATCGGATCGC+CGG 0.554165 2:+8639581 MsaT006702.1:CDS
ATTCCAATGAAGAATGTGGA+AGG 0.559865 2:+8638888 MsaT006702.1:CDS
GAATGAATACCTTGGATAAG+GGG 0.571511 2:-8638976 None:intergenic
CGGTGTTGTTGCTGGTGTTG+CGG 0.572453 2:-8639431 None:intergenic
CGCCGGTGGTGATGTTAGTG+TGG 0.574656 2:+8639740 MsaT006702.1:CDS
CTCCGGCAACTCTCCGAGAT+CGG 0.577094 2:-8639676 None:intergenic
TCCCACACTAACATCACCAC+CGG 0.582238 2:-8639742 None:intergenic
AGAAATTCCAATGAAGAATG+TGG 0.583073 2:+8638884 MsaT006702.1:CDS
GATCGGAGGTGTATGTTACA+AGG 0.587899 2:-8639377 None:intergenic
TATGTTACAAGGAGAACGGT+GGG 0.590777 2:-8639366 None:intergenic
GAAAATTCAATGATTGCCAC+CGG 0.593733 2:+8639531 MsaT006702.1:CDS
ACTAACATCACCACCGGCGC+CGG 0.599715 2:-8639736 None:intergenic
CTCCAAGCCCATGAATCAGA+CGG 0.600001 2:-8638924 None:intergenic
GCCGGTGGTGATGTTAGTGT+GGG 0.605737 2:+8639741 MsaT006702.1:CDS
AGAGTTGCCGGAGTGTTCGA+CGG 0.606059 2:+8639686 MsaT006702.1:CDS
TTCCAATGAAGAATGTGGAA+GGG 0.616216 2:+8638889 MsaT006702.1:CDS
CAAAACACCGTCGAACACTC+CGG 0.616354 2:-8639693 None:intergenic
CACGGCGTGGTTGTGATCGG+AGG 0.619714 2:-8639391 None:intergenic
TCAAAGGTTCCCCTTATCCA+AGG 0.623779 2:+8638967 MsaT006702.1:CDS
GAGCAATTAGCTTCAACTAG+TGG 0.632709 2:-8639765 None:intergenic
ACTTCCTTCTCCGAAAACAT+CGG 0.637465 2:-8639618 None:intergenic
CCGGTGATGAGTTAGGCGGA+TGG 0.641308 2:+8639550 MsaT006702.1:CDS
GGTGTATGTTACAAGGAGAA+CGG 0.648738 2:-8639370 None:intergenic
TTCTTGGTGGTGGCACGGCG+TGG 0.655603 2:-8639404 None:intergenic
CCATCCGCCTAACTCATCAC+CGG 0.656119 2:-8639550 None:intergenic
GGAGAACGGTGGGGTCCATG+TGG 0.658885 2:-8639356 None:intergenic
ACAAGTAGAAAGAAACCACA+TGG 0.663213 2:+8639341 MsaT006702.1:CDS
TCCGCCTAACTCATCACCGG+TGG 0.676396 2:-8639547 None:intergenic
GTATGTTACAAGGAGAACGG+TGG 0.715629 2:-8639367 None:intergenic
GCCACCGGTGATGAGTTAGG+CGG 0.726711 2:+8639546 MsaT006702.1:CDS
CAAGCCCATGAATCAGACGG+TGG 0.730326 2:-8638921 None:intergenic
ATGTTACAAGGAGAACGGTG+GGG 0.778163 2:-8639365 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 8638608 8639794 8638608 ID=MsaG006702
Chr2 mRNA 8638608 8639794 8638608 ID=MsaT006702.1;Parent=MsaG006702
Chr2 exon 8638608 8638642 8638608 ID=MsaT006702.1.exon1;Parent=MsaT006702.1
Chr2 CDS 8638608 8638642 8638608 ID=cds.MsaT006702.1;Parent=MsaT006702.1
Chr2 exon 8638860 8638988 8638860 ID=MsaT006702.1.exon2;Parent=MsaT006702.1
Chr2 CDS 8638860 8638988 8638860 ID=cds.MsaT006702.1;Parent=MsaT006702.1
Chr2 exon 8639296 8639794 8639296 ID=MsaT006702.1.exon3;Parent=MsaT006702.1
Chr2 CDS 8639296 8639794 8639296 ID=cds.MsaT006702.1;Parent=MsaT006702.1
Gene Sequence

>MsaT006702.1

ATGGAAAGATCATCACTCTCTTCTTCTGCTAAAAGGCGAGGTATAAAGAAAAGGGTAGTAGAAATTCCAATGAAGAATGTGGAAGGGACTAACACTCCACCGTCTGATTCATGGGCTTGGAGAAAGTATGGTCAAAAACCCATCAAAGGTTCCCCTTATCCAAGAGGATACTATAGATGTAGCAGTTCAAAGAATTGTCCAGCAAGAAAACAAGTAGAAAGAAACCACATGGACCCCACCGTTCTCCTTGTAACATACACCTCCGATCACAACCACGCCGTGCCACCACCAAGAAACTACCGCAACACCAGCAACAACACCGCATCAAACAAAGACTCAGAATCAGAACCTGAACCAGAACAAGAACAAGAACCCGATGAAACGTTTACGAATATCGAAGAAAATTCAATGATTGCCACCGGTGATGAGTTAGGCGGATGGTTTGGAGATTTGGAGGCGATCGGATCGCCGGCAGTGTTGGAGTGTCCGATGTTTTCGGAGAAGGAAGTGTCTATGTTGGGAGAAGAGGAGATGTCGTTGTTTGCCGATCTCGGAGAGTTGCCGGAGTGTTCGACGGTGTTTTGGAGAGGTAGGAGGAGTGGTGCCGGCGCCGGTGGTGATGTTAGTGTGGGACCACTAGTTGAAGCTAATTGCTCGTTGTGA
Protein sequence

>MsaT006702.1

MERSSLSSSAKRRGIKKRVVEIPMKNVEGTNTPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKNCPARKQVERNHMDPTVLLVTYTSDHNHAVPPPRNYRNTSNNTASNKDSESEPEPEQEQEPDETFTNIEENSMIATGDELGGWFGDLEAIGSPAVLECPMFSEKEVSMLGEEEMSLFADLGELPECSTVFWRGRRSGAGAGGDVSVGPLVEANCSL*