AlfalfaGEDB | MsaG006713

M. sativa ssp. caerulea / MsaG006713

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005856 GO:0005938 GO:0006355 GO:0007275 GO:0008150 GO:0009553 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0030863 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045892 GO:0045934 GO:0048229 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071944 GO:0080090 GO:0099568 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
PFAM: PF04844.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006713	RHN72142.1	85.263	190	19	4	12	197	133	317	1.99e-94	288

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006713	sp\|Q8VZN1\|OFP5_ARATH	42.038	157	73	5	30	185	203	342	2.94e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006713	tr\|A0A396J489\|A0A396J489_MEDTR	85.263	190	19	4	12	197	133	317	9.50e-95	288

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TFs/TRs:

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Gene ID	Type	Classification
MsaG006713	TF	OFP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG000032	MsaG006713	0.847407	2.225782e-59	1.104965e-56
MsaG000137	MsaG006713	0.847714	1.835330e-59	9.205376e-57
MsaG000202	MsaG006713	0.813703	3.859674e-51	7.221705e-49
MsaG000227	MsaG006713	0.808374	5.442495e-50	8.936860e-48
MsaG000286	MsaG006713	0.826912	3.726861e-54	9.885630e-52
MsaG000430	MsaG006713	0.804053	4.379240e-49	6.495328e-47
MsaG000545	MsaG006713	0.800724	2.108880e-48	2.898377e-46
MsaG000621	MsaG006713	0.808319	5.590682e-50	9.167914e-48
MsaG000705	MsaG006713	0.832065	2.113099e-55	6.491683e-53
MsaG000772	MsaG006713	0.809611	2.965910e-50	5.017635e-48

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006713	MtrunA17_Chr2g0284471	85.263	190	19	4	12	197	133	317	1.83e-98	288
MsaG006713	MtrunA17_Chr8g0379681	51.724	145	56	3	57	191	182	322	1.34e-39	138
MsaG006713	MtrunA17_Chr7g0244571	37.838	148	81	4	46	189	203	343	1.80e-23	95.9
MsaG006713	MtrunA17_Chr4g0013081	37.576	165	92	4	35	197	227	382	2.96e-22	93.2
MsaG006713	MtrunA17_Chr5g0432531	33.742	163	79	6	33	185	103	246	1.54e-20	86.7
MsaG006713	MtrunA17_Chr8g0390531	48.529	68	35	0	125	192	258	325	1.46e-15	73.9
MsaG006713	MtrunA17_Chr4g0025901	27.907	129	84	1	66	185	31	159	2.54e-12	62.8
MsaG006713	MtrunA17_Chr4g0075391	40.678	59	35	0	127	185	83	141	5.55e-12	61.2
MsaG006713	MtrunA17_Chr1g0177881	42.857	63	36	0	128	190	105	167	3.37e-11	59.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006713	AT4G18830.1	42.038	157	73	5	30	185	203	342	2.99e-32	119
MsaG006713	AT1G06920.1	63.636	66	22	1	124	189	242	305	8.75e-23	94.0
MsaG006713	AT2G30400.1	65.152	66	21	1	124	189	251	314	2.08e-22	92.8
MsaG006713	AT5G58360.1	44.578	83	44	1	107	189	206	286	4.61e-18	80.9
MsaG006713	AT5G01840.1	53.846	65	28	1	129	193	202	264	6.82e-18	80.1
MsaG006713	AT5G19650.1	49.180	61	31	0	125	185	154	214	3.70e-15	71.6
MsaG006713	AT2G18500.1	41.176	68	38	1	124	191	225	290	8.99e-13	66.2
MsaG006713	AT4G04025.1	42.254	71	41	0	115	185	103	173	1.76e-11	60.8
MsaG006713	AT3G52525.1	46.667	60	32	0	126	185	67	126	2.17e-11	60.5

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Find 28 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGATGAAGAAAGAAATTG+TGG	0.494347	2:+8756094	MsaT006713.1:CDS
AAATTATTTACTAGTTAATC+TGG	0.300711	2:+8756850	MsaT006713.1:CDS
ACAGCAAAACTATCTAATTC+TGG	0.358668	2:-8756137	None:intergenic
ACGATAGGCGGCGGCGTTTG+CGG	0.428514	2:-8751967	None:intergenic
AGAAGAAATGGAAGAGTTGT+TGG	0.458484	2:+8756241	MsaT006713.1:CDS
ATCTCATAATCAAAGTATTT+AGG	0.389618	2:+8756300	MsaT006713.1:CDS
ATGTTCATCAAATCCAAAGC+AGG	0.550210	2:+8756166	MsaT006713.1:CDS
ATTTACTAGTTAATCTGGTT+TGG	0.305585	2:+8756855	MsaT006713.1:CDS
CATAATCAAAGTATTTAGGC+AGG	0.542446	2:+8756304	MsaT006713.1:CDS
CTGCGATTCACTAAGGTACA+TGG	0.426392	2:-8751922	None:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	8751924	8756883	8751924	ID=MsaG006713
Chr2	mRNA	8751924	8756883	8751924	ID=MsaT006713.1;Parent=MsaG006713
Chr2	exon	8751924	8751987	8751924	ID=MsaT006713.1.exon1;Parent=MsaT006713.1
Chr2	CDS	8751924	8751987	8751924	ID=cds.MsaT006713.1;Parent=MsaT006713.1
Chr2	exon	8755838	8756325	8755838	ID=MsaT006713.1.exon2;Parent=MsaT006713.1
Chr2	CDS	8755838	8756325	8755838	ID=cds.MsaT006713.1;Parent=MsaT006713.1
Chr2	exon	8756806	8756883	8756806	ID=MsaT006713.1.exon3;Parent=MsaT006713.1
Chr2	CDS	8756806	8756883	8756806	ID=cds.MsaT006713.1;Parent=MsaT006713.1

Gene Sequence

>MsaT006713.1

ATGTACCTTAGTGAATCGCAGAAAAATCTTCGTCAGTCAATCGCCGCAAACGCCGCCGCCTATCATTCGACGAAGAATTCTTCTAGCTTAAGAAATATTCGTTTTGAGAAAAGTGAGATTGCATCATCTCAGAAGAAACAAAGTAATTATGAGAAGCATAGTTTGGAAAAGCATGAAGAGTTGAAGGTAAAGACTCAAGAAAAACAAAGGAGGAAACCAAAGAAAGTTTCAAGGGTGAAAATATATTCACCAAGATTGGTTTCAAAGGTTGAAATATGCAGAATAAAAGCATTAGAAGAAATGAGGAACAAAGCAAAACAAAAGATGAAGAAAGAAATTGTGGAGGAAATTATTAGTACTAAACCAGAATTAGATAGTTTTGCTGTGATTAAATGTTCATCAAATCCAAAGCAGGATTTTAGAGATTCAATGATTGAGATGATTGAAGAGAAACAGATTAGTAAGGCAGAAGAAATGGAAGAGTTGTTGGCATGTTATTTGACTTTGAATGCTGATGAGTATCATGATCTCATAATCAAAGTATTTAGGCAGATTGAAAAGTGGATACTTATCGACATCTATAAAAAAGGAAGAAAAAATTATTTACTAGTTAATCTGGTTTGGGACTGA

Protein sequence

>MsaT006713.1

MYLSESQKNLRQSIAANAAAYHSTKNSSSLRNIRFEKSEIASSQKKQSNYEKHSLEKHEELKVKTQEKQRRKPKKVSRVKIYSPRLVSKVEICRIKALEEMRNKAKQKMKKEIVEEIISTKPELDSFAVIKCSSNPKQDFRDSMIEMIEEKQISKAEEMEELLACYLTLNADEYHDLIIKVFRQIEKWILIDIYKKGRKNYLLVNLVWD*