AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006745

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006745 MtrunA17_Chr2g0284911 98.851 261 2 1 1 261 1 260 0.0 526
MsaG006745 MtrunA17_Chr8g0380021 75.954 262 44 4 1 261 1 244 3.06e-141 396
MsaG006745 MtrunA17_Chr3g0097101 60.920 261 85 3 1 261 1 244 1.96e-105 305
MsaG006745 MtrunA17_Chr3g0077501 72.727 176 48 0 16 191 1 176 8.16e-88 260
MsaG006745 MtrunA17_Chr8g0351051 49.123 171 87 0 16 186 1 171 6.75e-54 174
MsaG006745 MtrunA17_Chr8g0351031 50.296 169 83 1 18 185 3 171 2.95e-50 164
MsaG006745 MtrunA17_Chr5g0411691 48.538 171 86 1 16 186 1 169 5.46e-49 161
MsaG006745 MtrunA17_Chr8g0351041 50.625 160 78 1 18 176 3 162 3.52e-48 157
MsaG006745 MtrunA17_Chr2g0279821 48.538 171 87 1 16 186 1 170 7.34e-48 159
MsaG006745 MtrunA17_Chr5g0420091 40.278 216 116 3 16 230 1 204 5.19e-46 153
MsaG006745 MtrunA17_Chr7g0246431 46.667 165 88 0 18 182 3 167 7.74e-46 152
MsaG006745 MtrunA17_Chr7g0220111 45.652 184 97 3 16 197 1 183 1.06e-45 153
MsaG006745 MtrunA17_Chr3g0122251 46.591 176 88 3 16 186 1 175 1.58e-45 153
MsaG006745 MtrunA17_Chr8g0366231 43.069 202 99 3 16 204 1 199 1.63e-45 152
MsaG006745 MtrunA17_Chr4g0049541 44.809 183 93 3 16 191 1 182 3.87e-44 149
MsaG006745 MtrunA17_Chr4g0061671 44.186 172 93 2 16 186 1 170 6.13e-44 147
MsaG006745 MtrunA17_Chr6g0455511 44.828 174 94 2 16 188 1 173 2.26e-43 147
MsaG006745 MtrunA17_Chr4g0057151 44.910 167 91 1 18 183 3 169 5.09e-43 145
MsaG006745 MtrunA17_Chr4g0061691 43.452 168 94 1 16 182 1 168 5.90e-43 145
MsaG006745 MtrunA17_Chr5g0420081 43.333 180 95 2 16 191 1 177 1.34e-42 145
MsaG006745 MtrunA17_Chr7g0220121 41.304 184 102 4 16 197 1 180 2.64e-39 137
MsaG006745 MtrunA17_Chr4g0020221 43.503 177 94 3 16 188 1 175 1.76e-38 135
MsaG006745 MtrunA17_Chr1g0204111 38.503 187 114 1 16 201 17 203 1.21e-37 132
MsaG006745 MtrunA17_Chr5g0412271 41.860 172 100 0 16 187 1 172 1.07e-35 127
MsaG006745 MtrunA17_Chr6g0474371 39.884 173 102 2 16 186 1 173 1.42e-34 123
MsaG006745 MtrunA17_Chr3g0125241 44.898 147 74 3 16 160 26 167 1.49e-34 123
MsaG006745 MtrunA17_Chr5g0412461 35.865 237 140 2 16 251 1 226 2.47e-34 123
MsaG006745 MtrunA17_Chr4g0018421 39.205 176 103 3 16 188 1 175 5.73e-34 122
MsaG006745 MtrunA17_Chr3g0142191 39.901 203 103 5 16 213 1 189 2.30e-33 121
MsaG006745 MtrunA17_Chr5g0427401 38.372 172 104 1 16 187 1 170 4.00e-32 117
MsaG006745 MtrunA17_Chr1g0164791 37.572 173 95 4 16 179 1 169 4.40e-31 115
MsaG006745 MtrunA17_Chr4g0049901 34.857 175 112 1 16 188 27 201 6.63e-31 115
MsaG006745 MtrunA17_Chr1g0159661 40.816 147 80 3 16 160 1 142 9.35e-29 107
MsaG006745 MtrunA17_Chr7g0246381 75.410 61 15 0 16 76 1 61 9.54e-29 104
MsaG006745 MtrunA17_Chr8g0377561 79.310 58 12 0 16 73 1 58 4.55e-28 103
MsaG006745 MtrunA17_Chr5g0404951 40.113 177 89 5 16 182 1 170 8.14e-28 106
MsaG006745 MtrunA17_Chr2g0308251 70.000 60 18 0 16 75 1 60 1.33e-25 96.7
MsaG006745 MtrunA17_Chr1g0173161 73.333 60 16 0 16 75 1 60 1.65e-25 96.3
MsaG006745 MtrunA17_Chr5g0427921 65.000 60 21 0 16 75 1 60 2.15e-24 92.8
MsaG006745 MtrunA17_Chr3g0134451 62.857 70 25 1 16 84 1 70 8.90e-23 95.1
MsaG006745 MtrunA17_Chr5g0425191 70.690 58 17 0 16 73 1 58 2.21e-22 88.6
MsaG006745 MtrunA17_Chr4g0044071 67.241 58 19 0 16 73 1 58 1.52e-21 86.7
MsaG006745 MtrunA17_Chr1g0169761 40.000 110 66 0 16 125 1 110 4.27e-19 82.0
MsaG006745 MtrunA17_Chr8g0357771 35.878 131 80 2 16 143 1 130 5.11e-19 82.0
MsaG006745 MtrunA17_Chr2g0292791 47.674 86 44 1 17 101 9 94 5.11e-19 83.2
MsaG006745 MtrunA17_Chr1g0206701 30.811 185 99 5 17 198 9 167 9.53e-19 82.8
MsaG006745 MtrunA17_Chr8g0376821 52.174 69 33 0 16 84 1 69 4.56e-18 79.3
MsaG006745 MtrunA17_Chr8g0379021 35.374 147 78 5 8 139 3 147 7.53e-18 79.0
MsaG006745 MtrunA17_Chr3g0099421 47.674 86 44 1 17 101 34 119 8.61e-18 80.5
MsaG006745 MtrunA17_Chr3g0089141 40.777 103 60 1 17 118 9 111 1.01e-17 79.7
MsaG006745 MtrunA17_Chr1g0208581 34.783 138 87 3 17 152 9 145 1.08e-17 79.7
MsaG006745 MtrunA17_Chr1g0208561 40.777 103 60 1 17 118 9 111 1.14e-17 79.3
MsaG006745 MtrunA17_Chr3g0099411 41.346 104 60 1 17 119 9 112 1.62e-17 79.0
MsaG006745 MtrunA17_Chr1g0206721 41.346 104 60 1 17 119 9 112 1.75e-17 79.3
MsaG006745 MtrunA17_Chr1g0175601 41.346 104 58 1 16 116 1 104 2.11e-17 77.8
MsaG006745 MtrunA17_Chr4g0074101 41.758 91 50 1 16 103 1 91 2.16e-17 78.2
MsaG006745 MtrunA17_Chr5g0419601 48.649 74 38 0 11 84 3 76 3.69e-17 78.2
MsaG006745 MtrunA17_Chr2g0325971 48.529 68 35 0 17 84 9 76 3.82e-17 78.2
MsaG006745 MtrunA17_Chr1g0166611 68.750 48 15 0 28 75 17 64 4.19e-17 75.9
MsaG006745 MtrunA17_Chr8g0355091 29.730 185 101 5 17 198 9 167 5.26e-17 77.8
MsaG006745 MtrunA17_Chr1g0206991 41.346 104 60 1 17 119 9 112 5.56e-17 76.6
MsaG006745 MtrunA17_Chr1g0188671 32.911 158 103 2 7 161 37 194 9.48e-17 77.8
MsaG006745 MtrunA17_Chr1g0175611 49.296 71 36 0 16 86 1 71 1.23e-16 75.5
MsaG006745 MtrunA17_Chr2g0333981 44.828 87 46 1 13 97 6 92 1.31e-16 75.5
MsaG006745 MtrunA17_Chr1g0187361 51.471 68 33 0 17 84 9 76 1.39e-16 76.6
MsaG006745 MtrunA17_Chr1g0149391 39.091 110 66 1 17 125 9 118 2.12e-16 76.3
MsaG006745 MtrunA17_Chr5g0422941 28.151 238 124 5 17 236 9 217 2.75e-16 75.9
MsaG006745 MtrunA17_Chr2g0317481 50.000 68 34 0 17 84 9 76 4.79e-16 75.1
MsaG006745 MtrunA17_Chr2g0317451 50.000 68 34 0 17 84 9 76 4.94e-16 75.1
MsaG006745 MtrunA17_Chr4g0018951 32.948 173 102 6 8 172 3 169 2.87e-15 71.6
MsaG006745 MtrunA17_Chr1g0180591 46.377 69 37 0 16 84 1 69 3.56e-15 71.6
MsaG006745 MtrunA17_Chr5g0422421 48.529 68 35 0 17 84 9 76 4.71e-15 72.4
MsaG006745 MtrunA17_Chr4g0060841 45.070 71 37 1 16 84 1 71 4.80e-15 73.9
MsaG006745 MtrunA17_Chr5g0417661 54.717 53 24 0 16 68 56 108 5.40e-15 69.7
MsaG006745 MtrunA17_Chr5g0427961 36.036 111 70 1 76 186 5 114 6.17e-15 70.9
MsaG006745 MtrunA17_Chr2g0300421 35.294 119 75 2 17 134 9 126 8.37e-15 70.5
MsaG006745 MtrunA17_Chr3g0119901 44.928 69 38 0 16 84 8 76 1.14e-14 70.9
MsaG006745 MtrunA17_Chr8g0356071 31.783 129 84 2 16 141 1 128 1.99e-14 69.3
MsaG006745 MtrunA17_Chr3g0085241 43.478 69 39 0 16 84 40 108 2.89e-14 70.5
MsaG006745 MtrunA17_Chr2g0300441 47.143 70 35 1 17 84 7 76 6.06e-14 69.3
MsaG006745 MtrunA17_Chr3g0089151 45.833 72 38 1 14 84 5 76 8.92e-14 66.6
MsaG006745 MtrunA17_Chr4g0052061 40.580 69 41 0 16 84 1 69 5.41e-13 65.1
MsaG006745 MtrunA17_Chr1g0212151 28.025 157 98 4 16 160 1 154 3.04e-12 65.9
MsaG006745 MtrunA17_Chr6g0457851 27.160 162 99 5 15 160 10 168 6.32e-12 64.7
MsaG006745 MtrunA17_Chr1g0206691 47.458 59 31 0 26 84 1 59 6.82e-12 63.5
MsaG006745 MtrunA17_Chr4g0052081 39.130 69 42 0 16 84 1 69 8.24e-12 62.4
MsaG006745 MtrunA17_Chr2g0308271 29.915 117 82 0 75 191 32 148 9.79e-12 62.8
MsaG006745 MtrunA17_Chr1g0187351 47.458 59 31 0 26 84 1 59 4.50e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006745 AT4G18960.1 68.254 252 68 3 11 261 12 252 2.80e-120 343
MsaG006745 AT3G58780.1 64.516 248 75 3 14 261 14 248 9.61e-106 306
MsaG006745 AT3G58780.5 64.516 248 75 3 14 261 20 254 1.83e-105 306
MsaG006745 AT2G42830.1 62.903 248 77 3 14 261 14 246 3.24e-101 295
MsaG006745 AT3G58780.2 62.903 248 72 4 14 261 14 241 2.54e-100 293
MsaG006745 AT3G58780.3 58.608 273 75 4 14 261 14 273 9.51e-100 292
MsaG006745 AT2G42830.2 62.400 250 77 4 14 261 14 248 3.06e-99 290
MsaG006745 AT3G58780.4 56.940 281 75 4 14 261 14 281 1.20e-98 290
MsaG006745 AT4G09960.1 71.271 181 52 0 16 196 1 181 1.67e-90 267
MsaG006745 AT4G09960.6 71.271 181 52 0 16 196 2 182 1.74e-90 267
MsaG006745 AT4G09960.5 71.271 181 52 0 16 196 11 191 2.78e-90 267
MsaG006745 AT4G09960.3 70.879 182 53 0 15 196 26 207 3.84e-90 267
MsaG006745 AT4G09960.4 66.500 200 62 2 2 196 81 280 4.77e-89 267
MsaG006745 AT4G09960.2 66.298 181 47 1 16 196 1 167 1.30e-80 242
MsaG006745 AT4G18960.3 56.701 194 72 3 69 261 56 238 7.17e-69 213
MsaG006745 AT4G18960.2 56.701 194 72 3 69 261 56 238 7.17e-69 213
MsaG006745 AT2G45650.1 49.123 171 86 1 16 186 1 170 7.65e-51 167
MsaG006745 AT3G57230.1 48.538 171 87 1 16 186 1 170 1.92e-50 166
MsaG006745 AT3G57230.4 48.538 171 87 1 16 186 1 170 1.92e-50 166
MsaG006745 AT4G18960.4 65.254 118 41 0 69 186 56 173 2.07e-50 164
MsaG006745 AT2G45660.1 44.505 182 95 1 18 199 3 178 5.31e-48 159
MsaG006745 AT3G57230.2 52.740 146 68 1 16 161 1 145 6.37e-47 153
MsaG006745 AT5G60910.1 47.753 178 90 3 16 191 1 177 1.40e-46 155
MsaG006745 AT1G69120.2 44.382 178 96 3 16 191 1 177 1.66e-46 155
MsaG006745 AT3G61120.1 38.494 239 145 2 16 254 1 237 4.48e-46 154
MsaG006745 AT2G45660.2 46.753 154 82 0 18 171 3 156 4.67e-46 152
MsaG006745 AT1G69120.1 44.382 178 96 3 16 191 1 177 1.57e-45 154
MsaG006745 AT5G15800.1 45.055 182 99 1 16 196 1 182 4.57e-45 152
MsaG006745 AT1G24260.1 46.591 176 91 3 16 188 1 176 4.69e-45 152
MsaG006745 AT4G22950.2 46.746 169 89 1 18 186 3 170 5.59e-45 149
MsaG006745 AT1G26310.1 44.944 178 95 3 16 190 1 178 5.68e-45 152
MsaG006745 AT5G15800.2 45.055 182 99 1 16 196 1 182 8.77e-45 152
MsaG006745 AT4G37940.1 48.555 173 84 4 16 186 1 170 1.95e-44 150
MsaG006745 AT5G62165.3 42.604 169 90 1 18 179 3 171 2.64e-44 149
MsaG006745 AT5G62165.1 42.604 169 90 1 18 179 3 171 2.64e-44 149
MsaG006745 AT5G62165.2 42.604 169 90 1 18 179 3 171 2.64e-44 149
MsaG006745 AT4G22950.3 47.024 168 88 1 18 185 3 169 3.97e-44 149
MsaG006745 AT4G22950.1 47.024 168 88 1 18 185 3 169 3.97e-44 149
MsaG006745 AT5G62165.17 44.737 152 84 0 18 169 3 154 4.04e-44 147
MsaG006745 AT5G62165.12 44.737 152 84 0 18 169 3 154 4.04e-44 147
MsaG006745 AT5G62165.11 44.737 152 84 0 18 169 3 154 4.04e-44 147
MsaG006745 AT1G24260.2 44.944 178 92 3 16 188 1 177 5.58e-44 149
MsaG006745 AT5G62165.6 46.528 144 77 0 18 161 3 146 8.30e-44 145
MsaG006745 AT5G62165.9 46.528 144 77 0 18 161 3 146 8.30e-44 145
MsaG006745 AT5G62165.7 46.528 144 77 0 18 161 3 146 8.30e-44 145
MsaG006745 AT5G62165.8 46.528 144 77 0 18 161 3 146 8.30e-44 145
MsaG006745 AT5G62165.13 46.528 144 77 0 18 161 3 146 8.30e-44 145
MsaG006745 AT3G02310.1 43.956 182 101 1 16 196 1 182 1.46e-43 148
MsaG006745 AT2G22630.1 47.059 170 86 3 16 183 1 168 2.61e-43 147
MsaG006745 AT2G22630.2 47.059 170 86 3 16 183 1 168 2.61e-43 147
MsaG006745 AT4G11880.2 49.677 155 76 2 18 171 3 156 5.29e-43 144
MsaG006745 AT4G11880.3 49.677 155 76 2 18 171 3 156 5.29e-43 144
MsaG006745 AT5G62165.10 46.259 147 79 0 18 164 3 149 5.42e-43 145
MsaG006745 AT5G62165.4 46.259 147 79 0 18 164 3 149 5.42e-43 145
MsaG006745 AT3G02310.2 45.614 171 92 1 16 185 1 171 3.37e-42 143
MsaG006745 AT4G37940.4 49.333 150 73 2 16 164 1 148 7.64e-42 142
MsaG006745 AT4G11880.4 51.724 145 68 2 18 161 3 146 8.81e-42 143
MsaG006745 AT4G11880.1 51.724 145 68 2 18 161 3 146 8.81e-42 143
MsaG006745 AT4G37940.3 49.660 147 71 2 16 161 1 145 1.58e-41 140
MsaG006745 AT2G03710.3 43.678 174 95 2 16 187 1 173 1.70e-41 141
MsaG006745 AT2G03710.2 42.938 177 98 2 16 190 1 176 2.30e-41 143
MsaG006745 AT2G03710.1 42.938 177 98 2 16 190 1 176 2.44e-41 143
MsaG006745 AT1G24260.3 45.732 164 83 3 16 174 1 163 4.59e-41 141
MsaG006745 AT5G13790.2 43.878 196 93 3 16 210 1 180 1.59e-40 141
MsaG006745 AT5G13790.1 43.590 195 92 3 16 210 1 177 3.11e-40 140
MsaG006745 AT5G51860.2 42.442 172 98 1 18 188 3 174 6.27e-39 135
MsaG006745 AT5G51860.1 37.624 202 118 3 18 215 3 200 3.11e-38 133
MsaG006745 AT2G14210.1 42.534 221 110 7 16 221 1 219 1.33e-37 132
MsaG006745 AT2G14210.2 42.534 221 110 7 16 221 1 219 1.96e-37 132
MsaG006745 AT5G51870.1 41.081 185 99 3 18 198 3 181 4.06e-37 130
MsaG006745 AT5G51870.4 42.604 169 90 2 18 182 3 168 5.92e-37 130
MsaG006745 AT5G51870.3 42.604 169 90 2 18 182 13 178 1.33e-36 129
MsaG006745 AT4G24540.1 38.636 176 108 0 16 191 1 176 6.96e-36 127
MsaG006745 AT5G51870.5 44.444 153 78 2 13 161 21 170 1.44e-35 126
MsaG006745 AT5G51870.2 45.270 148 74 2 18 161 3 147 2.21e-35 125
MsaG006745 AT1G71692.1 41.379 203 106 4 16 210 1 198 6.13e-35 125
MsaG006745 AT2G22540.3 39.881 168 101 0 16 183 1 168 1.65e-34 124
MsaG006745 AT2G22540.1 39.881 168 101 0 16 183 1 168 1.65e-34 124
MsaG006745 AT3G30260.1 40.397 151 89 1 16 165 1 151 7.45e-33 120
MsaG006745 AT5G23260.4 41.279 172 92 4 13 179 14 181 1.33e-32 120
MsaG006745 AT3G57390.3 36.313 179 105 2 16 186 1 178 3.96e-32 118
MsaG006745 AT5G23260.2 41.420 169 90 4 16 179 1 165 4.35e-32 119
MsaG006745 AT5G62165.14 59.783 92 33 1 18 109 3 90 6.92e-32 114
MsaG006745 AT3G57390.1 36.313 179 105 2 16 186 1 178 9.79e-32 117
MsaG006745 AT3G54340.1 42.405 158 84 3 16 171 1 153 1.02e-30 114
MsaG006745 AT2G22540.2 38.690 168 98 1 16 183 1 163 1.62e-30 114
MsaG006745 AT5G20240.1 41.722 151 81 3 16 164 1 146 1.81e-30 113
MsaG006745 AT5G23260.1 42.384 151 80 3 13 160 14 160 7.06e-30 113
MsaG006745 AT5G23260.3 42.282 149 79 3 16 161 1 145 1.81e-29 111
MsaG006745 AT5G20240.2 42.958 142 74 3 16 155 1 137 2.04e-29 108
MsaG006745 AT5G10140.1 38.144 194 106 4 16 207 1 182 1.16e-28 108
MsaG006745 AT5G65070.1 35.882 170 96 3 16 182 1 160 6.28e-28 106
MsaG006745 AT5G10140.4 35.567 194 97 4 16 207 1 168 8.94e-27 102
MsaG006745 AT5G10140.2 39.306 173 94 3 16 186 1 164 1.92e-26 101
MsaG006745 AT5G10140.3 38.728 173 95 3 16 186 1 164 3.95e-26 101
MsaG006745 AT5G65050.2 35.429 175 104 3 16 189 1 167 9.69e-26 100
MsaG006745 AT5G65060.3 34.286 175 106 3 16 189 1 167 1.50e-25 100
MsaG006745 AT5G65060.1 34.682 173 104 3 16 187 1 165 2.76e-25 99.4
MsaG006745 AT5G65050.3 35.838 173 102 3 16 187 1 165 3.90e-25 99.0
MsaG006745 AT5G65070.4 36.000 150 83 3 16 162 1 140 1.44e-24 96.3
MsaG006745 AT5G65080.3 38.750 160 83 5 16 171 8 156 4.14e-24 96.3
MsaG006745 AT5G65050.1 36.538 156 90 3 16 170 1 148 3.43e-23 93.6
MsaG006745 AT5G65070.2 32.984 191 104 4 16 182 1 191 4.64e-23 94.4
MsaG006745 AT5G65050.5 34.104 173 94 3 16 187 1 154 5.96e-23 92.8
MsaG006745 AT1G77980.1 60.000 70 27 1 16 84 1 70 7.62e-23 95.9
MsaG006745 AT1G22130.1 60.000 70 27 1 16 84 1 70 1.12e-22 95.5
MsaG006745 AT5G65060.2 34.682 173 93 4 16 187 1 154 1.45e-22 92.0
MsaG006745 AT5G65070.5 56.338 71 30 1 16 85 1 71 3.22e-22 91.7
MsaG006745 AT5G65070.3 29.703 202 97 3 16 182 1 192 8.91e-22 90.9
MsaG006745 AT1G31140.1 36.986 146 89 2 18 161 3 147 2.21e-21 89.7
MsaG006745 AT1G77080.5 36.782 174 101 3 16 188 1 166 6.94e-21 87.0
MsaG006745 AT1G31140.2 36.184 152 84 3 18 161 3 149 7.42e-21 88.2
MsaG006745 AT1G77080.4 34.359 195 116 4 16 209 1 184 8.32e-21 87.4
MsaG006745 AT1G77080.11 36.416 173 101 3 16 187 1 165 2.37e-20 85.9
MsaG006745 AT5G65080.2 36.306 157 86 4 16 169 8 153 3.69e-20 85.9
MsaG006745 AT1G77080.2 33.846 195 113 4 16 209 1 180 7.09e-20 85.1
MsaG006745 AT1G77950.3 52.857 70 32 1 16 84 1 70 1.43e-19 85.5
MsaG006745 AT1G77950.2 52.857 70 32 1 16 84 1 70 1.43e-19 85.5
MsaG006745 AT1G77950.1 52.857 70 32 1 16 84 1 70 1.43e-19 85.5
MsaG006745 AT1G77950.4 52.857 70 32 1 16 84 1 70 1.43e-19 85.5
MsaG006745 AT4G36590.1 50.000 76 38 0 17 92 7 82 2.00e-17 79.7
MsaG006745 AT1G18750.4 47.887 71 35 1 16 84 1 71 2.83e-17 80.9
MsaG006745 AT1G18750.1 47.887 71 35 1 16 84 1 71 3.41e-17 80.9
MsaG006745 AT1G77080.8 30.769 221 116 5 16 209 1 211 4.15e-17 78.2
MsaG006745 AT1G01530.1 36.842 133 65 3 13 145 3 116 4.64e-17 78.6
MsaG006745 AT1G18750.3 47.887 71 35 1 16 84 1 71 4.96e-17 80.5
MsaG006745 AT4G37435.1 52.857 70 32 1 16 84 1 70 5.82e-17 77.0
MsaG006745 AT1G77080.12 36.306 157 87 3 16 171 1 145 1.26e-16 75.1
MsaG006745 AT3G57230.5 36.066 122 73 2 69 186 16 136 1.44e-15 73.6
MsaG006745 AT3G57230.3 36.066 122 73 2 69 186 16 136 1.44e-15 73.6
MsaG006745 AT2G03060.3 45.946 74 38 1 16 87 1 74 1.51e-15 75.9
MsaG006745 AT2G03060.7 45.946 74 38 1 16 87 1 74 1.51e-15 75.9
MsaG006745 AT2G03060.1 45.946 74 38 1 16 87 1 74 1.51e-15 75.9
MsaG006745 AT2G03060.2 45.946 74 38 1 16 87 1 74 1.96e-15 75.5
MsaG006745 AT1G72350.1 55.882 68 28 1 17 84 43 108 2.39e-15 73.6
MsaG006745 AT1G69540.1 30.061 163 83 4 16 177 1 133 4.24e-15 74.3
MsaG006745 AT5G60440.1 48.529 68 35 0 17 84 7 74 4.29e-15 73.9
MsaG006745 AT2G34440.1 40.789 76 45 0 16 91 1 76 4.35e-15 71.6
MsaG006745 AT2G24840.1 47.826 69 36 0 16 84 62 130 4.75e-15 73.2
MsaG006745 AT1G69540.2 30.061 163 83 4 16 177 1 133 8.11e-15 73.6
MsaG006745 AT1G65360.1 39.726 73 44 0 13 85 3 75 1.74e-14 71.2
MsaG006745 AT3G04100.1 43.478 69 39 0 17 85 14 82 3.41e-14 70.1
MsaG006745 AT3G66656.1 42.857 70 40 0 16 85 1 70 8.49e-14 68.2
MsaG006745 AT1G47760.1 34.848 132 81 3 16 147 1 127 5.52e-13 66.2
MsaG006745 AT1G29962.1 41.096 73 43 0 12 84 3 75 1.97e-12 64.7
MsaG006745 AT1G28460.1 42.466 73 42 0 12 84 3 75 2.06e-12 64.3
MsaG006745 AT5G60910.2 40.476 84 50 0 108 191 32 115 6.61e-12 63.2
MsaG006745 AT1G69120.3 30.172 116 79 2 77 191 1 115 8.09e-12 63.2
MsaG006745 AT4G37940.2 39.286 112 63 4 77 186 1 109 3.19e-11 60.8

Find 45 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAAATGATGGGTGAATCTT+TGG 0.255744 2:+9126066 MsaT006745.1:CDS
CTGGAGTCTAAATTAGAAAA+AGG 0.301302 2:+9126118 MsaT006745.1:CDS
TAGTAGGATTCGTTCCAAAA+AGG 0.330593 2:+9126144 MsaT006745.1:CDS
CGTGGATACTTTCAAGTGTC+TGG 0.346648 2:+9126765 MsaT006745.1:CDS
GAATCTGACATGGATTCATT+TGG 0.366495 2:-9120255 None:intergenic
GCAATTTGTCTGCCTCTTGC+TGG 0.383758 2:-9125100 None:intergenic
TGCAGTCATTTGACTACTAC+TGG 0.388464 2:-9126796 None:intergenic
ATTAAAATGCAGGCAAATGA+TGG 0.389739 2:+9126054 MsaT006745.1:intron
TGTCTTGCATACTGACTACT+TGG 0.409247 2:-9126825 None:intergenic
TGTTATTAGCATATTCATAT+AGG 0.413476 2:-9120449 None:intergenic
TATATGAATATGCTAATAAC+AGG 0.413623 2:+9120451 MsaT006745.1:CDS
CTTGCCTGTTGTTATTCTGC+AGG 0.420200 2:-9125139 None:intergenic
ACTTTCTGCAAAAGAAGAAA+TGG 0.422896 2:+9120348 MsaT006745.1:CDS
GATTCTCCACAGAGAAAGAT+TGG 0.430256 2:+9120273 MsaT006745.1:CDS
ATCTTACTTACACTAATTGA+AGG 0.461453 2:-9126860 None:intergenic
GATTCATAGTTTGTGCCTCC+AGG 0.463009 2:-9126702 None:intergenic
TGACCTTTGCTCTCAGAAGT+TGG 0.483961 2:-9126527 None:intergenic
CAAATGATGGGTGAATCTTT+GGG 0.484707 2:+9126067 MsaT006745.1:CDS
TGCTTCTGAGGCTAATGCTC+AGG 0.489603 2:+9124921 MsaT006745.1:CDS
CCCCTTCCAATCTTTCTCTG+TGG 0.498694 2:-9120279 None:intergenic
AAAGCATGTTCAGATTCATC+TGG 0.501079 2:+9124889 MsaT006745.1:CDS
GTAACCTGCAGAATAACAAC+AGG 0.517127 2:+9125135 MsaT006745.1:CDS
ATTAATATGAGTATGTTGCC+TGG 0.522184 2:+9126684 MsaT006745.1:CDS
TACTCATATTAATATTGCTA+TGG 0.537147 2:-9126674 None:intergenic
TGGCACTGGATCTGCTTCTG+AGG 0.539441 2:+9124909 MsaT006745.1:CDS
CTCCACAGAGAAAGATTGGA+AGG 0.556965 2:+9120277 MsaT006745.1:CDS
TGTTCAGATTCATCTGGCAC+TGG 0.559407 2:+9124895 MsaT006745.1:CDS
CCACAGAGAAAGATTGGAAG+GGG 0.561133 2:+9120279 MsaT006745.1:CDS
CTTATAGTCTTCTCTAGCCG+TGG 0.565803 2:+9120423 MsaT006745.1:CDS
TTAAAATGCAGGCAAATGAT+GGG 0.576296 2:+9126055 MsaT006745.1:intron
CATATTCATATAGGCGTCCA+CGG 0.581532 2:-9120440 None:intergenic
AAATTGAATACATGCAGAAG+AGG 0.608005 2:+9126332 MsaT006745.1:CDS
TCTTACTTACACTAATTGAA+GGG 0.612238 2:-9126859 None:intergenic
TCCACAGAGAAAGATTGGAA+GGG 0.614919 2:+9120278 MsaT006745.1:CDS
CAGCAGCAATATGAGTCTCG+TGG 0.617440 2:+9126747 MsaT006745.1:CDS
TTTGGGCTCTATGAATGCCA+AGG 0.622758 2:+9126084 MsaT006745.1:CDS
AATTGAATACATGCAGAAGA+GGG 0.628753 2:+9126333 MsaT006745.1:CDS
TCTCTGTGGAGAATCTGACA+TGG 0.639233 2:-9120265 None:intergenic
CAACCAACTTCTGAGAGCAA+AGG 0.640033 2:+9126524 MsaT006745.1:CDS
ACACTAATTGAAGGGACATG+TGG 0.641842 2:-9126851 None:intergenic
GTGTCAAAGAAACTATTGCA+AGG 0.654122 2:+9124860 MsaT006745.1:intron
TAATATTGCTATGGTGACTG+TGG 0.672304 2:-9126665 None:intergenic
TGTAGATAGCTGAAAGTGAG+AGG 0.680785 2:+9126640 MsaT006745.1:intron
CACAGAGAAAGATTGGAAGG+GGG 0.691435 2:+9120280 MsaT006745.1:CDS
AATATGAGTATGTTGCCTGG+AGG 0.741151 2:+9126687 MsaT006745.1:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 9120246 9126875 9120246 ID=MsaG006745
Chr2 mRNA 9120246 9126875 9120246 ID=MsaT006745.1;Parent=MsaG006745
Chr2 exon 9120246 9120472 9120246 ID=MsaT006745.1.exon1;Parent=MsaT006745.1
Chr2 CDS 9120246 9120472 9120246 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9124861 9124942 9124861 ID=MsaT006745.1.exon2;Parent=MsaT006745.1
Chr2 CDS 9124861 9124942 9124861 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9125095 9125156 9125095 ID=MsaT006745.1.exon3;Parent=MsaT006745.1
Chr2 CDS 9125095 9125156 9125095 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9126066 9126165 9126066 ID=MsaT006745.1.exon4;Parent=MsaT006745.1
Chr2 CDS 9126066 9126165 9126066 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9126313 9126354 9126313 ID=MsaT006745.1.exon5;Parent=MsaT006745.1
Chr2 CDS 9126313 9126354 9126313 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9126504 9126545 9126504 ID=MsaT006745.1.exon6;Parent=MsaT006745.1
Chr2 CDS 9126504 9126545 9126504 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Chr2 exon 9126645 9126875 9126645 ID=MsaT006745.1.exon7;Parent=MsaT006745.1
Chr2 CDS 9126645 9126875 9126645 ID=cds.MsaT006745.1;Parent=MsaT006745.1
Gene Sequence

>MsaT006745.1

ATGGATTTTCCAAATGAATCCATGTCAGATTCTCCACAGAGAAAGATTGGAAGGGGGAAGATTGAGATCAAAAGGATTGAAAACACAACGAATCGCCAAGTAACTTTCTGCAAAAGAAGAAATGGTTTGTTGAAAAAAGCATATGAACTATCTGTTCTTTGTGATGCTGAAGTTGCTCTTATAGTCTTCTCTAGCCGTGGACGCCTATATGAATATGCTAATAACAGTGTCAAAGAAACTATTGCAAGGTACAAAAAAGCATGTTCAGATTCATCTGGCACTGGATCTGCTTCTGAGGCTAATGCTCAGTTTTACCAGCAAGAGGCAGACAAATTGCGTGTGCAAATTAGTAACCTGCAGAATAACAACAGGCAAATGATGGGTGAATCTTTGGGCTCTATGAATGCCAAGGAACTGAAAAATCTGGAGTCTAAATTAGAAAAAGGAATTAGTAGGATTCGTTCCAAAAAGAATGAGCTGTTATTTGCTGAAATTGAATACATGCAGAAGAGGGAGATAGACTTGCACAATAACAACCAACTTCTGAGAGCAAAGATAGCTGAAAGTGAGAGGAACCACAGTCACCATAGCAATATTAATATGAGTATGTTGCCTGGAGGCACAAACTATGAATCTATGCAGTCTCAGAATCAGCAGCAGCAGCAATATGAGTCTCGTGGATACTTTCAAGTGTCTGGATTACAATCCAGTAGTAGTCAAATGACTGCATTACAACCAAGTAGTCAGTATGCAAGACAAGACCACATGTCCCTTCAATTAGTGTAA
Protein sequence

>MsaT006745.1

MDFPNESMSDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKETIARYKKACSDSSGTGSASEANAQFYQQEADKLRVQISNLQNNNRQMMGESLGSMNAKELKNLESKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQLLRAKIAESERNHSHHSNINMSMLPGGTNYESMQSQNQQQQQYESRGYFQVSGLQSSSSQMTALQPSSQYARQDHMSLQLV*