AlfalfaGEDB | MsaG006805

M. sativa ssp. caerulea / MsaG006805

KEGG: -
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009908 GO:0009914 GO:0009926 GO:0009958 GO:0009986 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010154 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032989 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048764 GO:0048765 GO:0048766 GO:0048767 GO:0048825 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051179 GO:0051234 GO:0051716 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0080147 GO:0080167 GO:0090558 GO:0090567 GO:0090627 GO:0099402 GO:0140096 GO:1901564 GO:1905392 GO:2000012
PFAM: PF00069.28

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006805	XP_003593887.1	99.479	192	1	0	1	192	1	192	1.13e-131	387

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006805	sp\|O64682\|PID_ARATH	69.474	190	40	6	9	192	6	183	5.88e-78	242

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006805	tr\|G7IP53\|G7IP53_MEDTR	99.479	192	1	0	1	192	1	192	5.39e-132	387

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsaG006805	MsaG040266	0.808977	4.050609e-50	6.748714e-48

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006805	MtrunA17_Chr2g0285711	99.479	192	1	0	1	192	1	192	1.04e-135	387
MsaG006805	MtrunA17_Chr8g0381091	78.756	193	35	5	1	192	1	188	4.58e-93	278
MsaG006805	MtrunA17_Chr4g0063311	51.064	141	59	2	57	192	66	201	1.30e-44	154
MsaG006805	MtrunA17_Chr1g0179101	46.809	141	60	3	57	192	445	575	1.35e-36	134
MsaG006805	MtrunA17_Chr2g0309421	41.451	193	83	4	6	192	112	280	2.81e-36	132
MsaG006805	MtrunA17_Chr7g0227331	47.518	141	59	2	57	192	207	337	3.23e-36	132
MsaG006805	MtrunA17_Chr2g0290691	44.578	166	77	2	26	186	148	303	8.87e-36	131
MsaG006805	MtrunA17_Chr8g0335351	46.809	141	60	2	57	192	345	475	1.82e-35	131
MsaG006805	MtrunA17_Chr7g0250631	46.809	141	60	2	57	192	339	469	3.07e-35	130
MsaG006805	MtrunA17_Chr2g0312641	46.853	143	59	4	57	192	67	199	3.35e-35	129
MsaG006805	MtrunA17_Chr7g0266031	45.390	141	62	2	57	192	467	597	3.49e-34	127
MsaG006805	MtrunA17_Chr6g0449401	44.000	150	69	2	48	192	229	368	6.21e-34	126
MsaG006805	MtrunA17_Chr3g0080101	43.262	141	65	2	57	192	390	520	9.25e-33	123
MsaG006805	MtrunA17_Chr8g0356291	43.357	143	65	2	56	192	100	232	2.16e-32	121
MsaG006805	MtrunA17_Chr2g0321101	43.478	115	58	1	78	192	90	197	4.04e-26	103
MsaG006805	MtrunA17_Chr8g0369091	32.877	146	83	2	52	192	567	702	2.49e-23	96.7
MsaG006805	MtrunA17_Chr4g0030361	38.462	130	65	3	57	181	282	401	1.04e-21	92.0
MsaG006805	MtrunA17_Chr2g0327561	36.508	126	65	2	57	177	601	716	1.88e-20	88.2
MsaG006805	MtrunA17_Chr7g0234641	32.258	124	71	2	74	192	8	123	3.38e-15	72.8
MsaG006805	MtrunA17_Chr4g0032761	35.000	120	73	2	74	192	10	125	3.94e-15	72.8
MsaG006805	MtrunA17_Chr8g0338741	31.298	131	74	2	70	192	11	133	1.83e-14	70.9
MsaG006805	MtrunA17_Chr2g0329011	32.479	117	68	3	74	190	12	117	1.42e-13	68.2
MsaG006805	MtrunA17_Chr7g0245031	30.645	124	72	3	69	192	140	249	1.82e-11	62.0
MsaG006805	MtrunA17_Chr1g0197721	29.600	125	77	2	59	183	32	145	2.88e-11	61.6

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006805	AT2G34650.1	69.474	190	40	6	9	192	6	183	5.98e-79	242
MsaG006805	AT2G26700.1	52.817	142	53	2	57	192	59	192	6.66e-45	155
MsaG006805	AT5G55910.2	47.518	141	59	2	57	192	82	212	1.80e-38	138
MsaG006805	AT5G55910.1	47.518	141	59	2	57	192	82	212	1.80e-38	138
MsaG006805	AT4G26610.1	46.409	181	65	6	19	192	71	226	3.67e-38	137
MsaG006805	AT5G47750.1	44.186	172	81	2	26	192	133	294	2.08e-35	130
MsaG006805	AT5G40030.1	45.775	142	61	2	57	192	86	217	2.96e-35	129
MsaG006805	AT3G12690.1	44.898	147	66	2	51	192	152	288	3.51e-35	130
MsaG006805	AT3G12690.3	44.898	147	66	2	51	192	152	288	3.51e-35	130
MsaG006805	AT3G12690.2	44.898	147	66	2	51	192	152	288	3.51e-35	130
MsaG006805	AT3G52890.2	46.099	141	61	2	57	192	511	641	5.04e-35	130
MsaG006805	AT3G52890.4	46.099	141	61	2	57	192	511	641	5.04e-35	130
MsaG006805	AT3G52890.1	46.099	141	61	2	57	192	511	641	5.04e-35	130
MsaG006805	AT3G52890.3	46.099	141	61	2	57	192	511	641	5.04e-35	130
MsaG006805	AT2G36350.1	44.681	141	63	2	57	192	532	662	9.47e-35	129
MsaG006805	AT1G16440.1	43.972	141	66	2	57	192	86	218	3.26e-34	126
MsaG006805	AT2G44830.2	45.390	141	62	2	57	192	336	466	7.91e-34	127
MsaG006805	AT2G44830.3	45.390	141	62	2	57	192	336	466	7.91e-34	127
MsaG006805	AT2G44830.1	45.390	141	62	2	57	192	336	466	7.91e-34	127
MsaG006805	AT1G79250.1	43.972	141	64	2	57	192	119	249	1.81e-33	125
MsaG006805	AT1G79250.3	43.972	141	64	2	57	192	119	249	1.81e-33	125
MsaG006805	AT1G79250.2	43.972	141	64	2	57	192	119	249	1.81e-33	125
MsaG006805	AT1G79250.4	43.972	141	64	2	57	192	119	249	1.81e-33	125
MsaG006805	AT5G03640.2	36.269	193	99	4	11	192	465	644	1.05e-32	124
MsaG006805	AT5G03640.1	36.269	193	99	4	11	192	465	644	1.05e-32	124
MsaG006805	AT3G27580.2	44.056	143	63	3	57	192	153	285	2.23e-32	122
MsaG006805	AT3G27580.1	44.056	143	63	3	57	192	153	285	2.23e-32	122
MsaG006805	AT1G53700.1	43.382	136	67	3	58	192	71	197	3.06e-31	118
MsaG006805	AT3G14370.1	35.417	192	106	3	9	192	10	191	6.31e-29	112
MsaG006805	AT3G44610.1	43.119	109	62	0	84	192	74	182	1.50e-24	99.8
MsaG006805	AT5G58140.4	36.429	140	74	3	58	192	551	680	1.53e-23	97.4
MsaG006805	AT5G58140.6	36.429	140	74	3	58	192	551	680	1.81e-23	97.4
MsaG006805	AT5G58140.7	36.429	140	74	3	58	192	551	680	1.81e-23	97.4
MsaG006805	AT5G58140.5	36.429	140	74	3	58	192	551	680	1.81e-23	97.4
MsaG006805	AT5G58140.2	36.429	140	74	3	58	192	551	680	1.81e-23	97.4
MsaG006805	AT5G58140.1	36.429	140	74	3	58	192	551	680	1.81e-23	97.4
MsaG006805	AT5G58140.3	36.429	140	74	3	58	192	551	680	2.03e-23	97.4
MsaG006805	AT3G45780.2	36.170	141	75	4	57	192	636	766	1.13e-19	86.7
MsaG006805	AT3G45780.1	36.170	141	75	4	57	192	636	766	1.13e-19	86.7
MsaG006805	AT3G08720.1	31.933	119	69	2	74	192	135	241	5.50e-13	67.0
MsaG006805	AT3G08720.3	31.933	119	69	2	74	192	135	241	5.50e-13	67.0
MsaG006805	AT3G08720.4	31.933	119	69	2	74	192	135	241	5.50e-13	67.0
MsaG006805	AT3G08720.2	31.933	119	69	2	74	192	135	241	5.50e-13	67.0
MsaG006805	AT3G08730.1	30.400	125	74	3	69	192	123	235	5.75e-12	63.9
MsaG006805	AT3G08730.2	30.400	125	74	3	69	192	123	235	5.75e-12	63.9
MsaG006805	AT3G10540.1	28.571	154	93	4	39	192	10	146	3.20e-11	61.6

Find 58 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TCATTTCTCTTGCATTGTTA+TGG	0.231413	2:-10027927	MsaT006805.1:CDS
AGTGGTAGTGGACGTGATTC+TGG	0.265800	2:-10028394	MsaT006805.1:CDS
GTCTTTATCAACAACCTTCA+TGG	0.286201	2:+10028057	None:intergenic
AAAGTCACATAGAGCGGAAA+TGG	0.379418	2:-10028017	MsaT006805.1:CDS
GGTTTGATGGAGAGAGATTC+CGG	0.379866	2:+10028253	None:intergenic
CTATGTCGCCGGCACCTATA+CGG	0.386274	2:+10028155	None:intergenic
GGAGGAGCGGTGAGGTTTGA+TGG	0.396146	2:+10028240	None:intergenic
TACACCGCCATCCGCAAATC+CGG	0.418616	2:-10028208	MsaT006805.1:CDS
AACAACCTTCATGGCGTAGA+AGG	0.436171	2:+10028066	None:intergenic
TTCCACCTTCTCCGCCGTAT+AGG	0.454282	2:-10028169	MsaT006805.1:CDS
GCATAGAGACTAGGAAGAAA+AGG	0.460620	2:+10027965	None:intergenic
GGAAGGTGAGGCCGGATTTG+CGG	0.477894	2:+10028197	None:intergenic
AGAGATTCCGGTGAGGAGGA+TGG	0.481094	2:+10028265	None:intergenic
GGAGGATGGGAGGAGGTCGA+AGG	0.486221	2:+10028279	None:intergenic
GAGATTCCGGTGAGGAGGAT+GGG	0.490200	2:+10028266	None:intergenic
GAAGGAGAGACGGCTGAAGC+TGG	0.493519	2:+10028297	None:intergenic
CGTATAGGTGCCGGCGACAT+AGG	0.503733	2:-10028154	MsaT006805.1:CDS
GGTTGCGATGGTGGCGGTGA+CGG	0.510358	2:+10027873	None:intergenic
CGGCACCTATACGGCGGAGA+AGG	0.515164	2:+10028164	None:intergenic
GAGAGAAGCGGTTGCGATGG+TGG	0.524662	2:+10027864	None:intergenic
CCGGTGAGGAGGATGGGAGG+AGG	0.529475	2:+10028272	None:intergenic
GAAGTCACGGAAGGTGAGGC+CGG	0.537513	2:+10028189	None:intergenic
CACTTCCTTCTACGCCATGA+AGG	0.538609	2:-10028071	MsaT006805.1:CDS
CACCTATACGGCGGAGAAGG+TGG	0.542299	2:+10028167	None:intergenic
ATTCCGGTGAGGAGGATGGG+AGG	0.543106	2:+10028269	None:intergenic
ATCATGTTAGAGAGTGGTAG+TGG	0.548382	2:-10028406	MsaT006805.1:CDS
GGTGAGGCCGGATTTGCGGA+TGG	0.550138	2:+10028201	None:intergenic
CCTCCTCCCATCCTCCTCAC+CGG	0.555307	2:-10028272	MsaT006805.1:CDS
GATGGCGGTGTAAGCGAAGT+CGG	0.556423	2:+10028219	None:intergenic
CTTCTCCGCCGTATAGGTGC+CGG	0.558122	2:-10028163	MsaT006805.1:CDS
TAATGAAGTTCGCTGTGTGT+TGG	0.558554	2:+10028348	None:intergenic
ATCGTAGAGGAGTTCATTTG+CGG	0.560259	2:+10028099	None:intergenic
GTTCATTTGCGGAGGAGTCA+CGG	0.561135	2:+10028110	None:intergenic
AAAGAGAGAAGCGGTTGCGA+TGG	0.564790	2:+10027861	None:intergenic
GGCGGAGAAGGTGGAAGTCA+CGG	0.567107	2:+10028176	None:intergenic
AGGAGTCACGGAGGCGACAG+AGG	0.586929	2:+10028122	None:intergenic
GGAGAGAGATTCCGGTGAGG+AGG	0.589518	2:+10028261	None:intergenic
GGAGGAGGTCGAAGGAGAGA+CGG	0.589842	2:+10028287	None:intergenic
GTAAACCGTGCCTATGTCGC+CGG	0.597296	2:+10028144	None:intergenic
GGTGGAAGTCACGGAAGGTG+AGG	0.600595	2:+10028185	None:intergenic
GCTTCTCTCTTTCATCAGCA+AGG	0.605644	2:-10027850	MsaT006805.1:CDS
AGAAGCGGTTGCGATGGTGG+CGG	0.610467	2:+10027867	None:intergenic
TCAAATTCAGCATAGAGACT+AGG	0.611689	2:+10027956	None:intergenic
GTAGAGGAGTTCATTTGCGG+AGG	0.626480	2:+10028102	None:intergenic
GAGAGAGTGCAAATCTCCAC+CGG	0.628323	2:+10027895	None:intergenic
TGCTCCATCATGTTAGAGAG+TGG	0.636490	2:-10028412	None:intergenic
AGGAAGTGTTATCATCGTAG+AGG	0.645812	2:+10028086	None:intergenic
TGTAAGCGAAGTCGGAGGAG+CGG	0.659359	2:+10028227	None:intergenic
GAGAAGGTGGAAGTCACGGA+AGG	0.661147	2:+10028180	None:intergenic
AGGTGCCGGCGACATAGGCA+CGG	0.686515	2:-10028149	MsaT006805.1:CDS
CAGCGAACTTCATTAAGCAG+CGG	0.686571	2:-10028340	MsaT006805.1:CDS
GGCGGTGTAAGCGAAGTCGG+AGG	0.697109	2:+10028222	None:intergenic
GAGGCCGGATTTGCGGATGG+CGG	0.698175	2:+10028204	None:intergenic
GCGAAGTCGGAGGAGCGGTG+AGG	0.701596	2:+10028232	None:intergenic
TTGCTGATGAAAGAGAGAAG+CGG	0.723476	2:+10027852	None:intergenic
GATGGAGAGAGATTCCGGTG+AGG	0.731793	2:+10028258	None:intergenic
TGTCGCCGGCACCTATACGG+CGG	0.765081	2:+10028158	None:intergenic
CATTTGCGGAGGAGTCACGG+AGG	0.796321	2:+10028113	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	10027847	10028425	10027847	ID=MsaG006805
Chr2	mRNA	10027847	10028425	10027847	ID=MsaT006805.1;Parent=MsaG006805
Chr2	exon	10027847	10028425	10027847	ID=MsaT006805.1.exon1;Parent=MsaT006805.1
Chr2	CDS	10027847	10028425	10027847	ID=cds.MsaT006805.1;Parent=MsaT006805.1

Gene Sequence

>MsaT006805.1

ATGTTAGAGAGTGGTAGTGGACGTGATTCTGGAATGAGTTTAGAAACATTAAACTCCAACACACAGCGAACTTCATTAAGCAGCGGCAGTGAAAGCATTTGCAGCACCAGCTTCAGCCGTCTCTCCTTCGACCTCCTCCCATCCTCCTCACCGGAATCTCTCTCCATCAAACCTCACCGCTCCTCCGACTTCGCTTACACCGCCATCCGCAAATCCGGCCTCACCTTCCGTGACTTCCACCTTCTCCGCCGTATAGGTGCCGGCGACATAGGCACGGTTTACCTCTGTCGCCTCCGTGACTCCTCCGCAAATGAACTCCTCTACGATGATAACACTTCCTTCTACGCCATGAAGGTTGTTGATAAAGACGCTGTTGCTCTTAAGAAAAAGTCACATAGAGCGGAAATGGAGAGAAAGATTCTTAAGATGCTTGATCATCCTTTTCTTCCTAGTCTCTATGCTGAATTTGAAGCTTCTCATTTCTCTTGCATTGTTATGGAGTTTTGTTCCGGTGGAGATTTGCACTCTCTCCGTCACCGCCACCATCGCAACCGCTTCTCTCTTTCATCAGCAAGGTAA

Protein sequence

>MsaT006805.1

MLESGSGRDSGMSLETLNSNTQRTSLSSGSESICSTSFSRLSFDLLPSSSPESLSIKPHRSSDFAYTAIRKSGLTFRDFHLLRRIGAGDIGTVYLCRLRDSSANELLYDDNTSFYAMKVVDKDAVALKKKSHRAEMERKILKMLDHPFLPSLYAEFEASHFSCIVMEFCSGGDLHSLRHRHHRNRFSLSSAR*