AlfalfaGEDB | MsaG006816

M. sativa ssp. caerulea / MsaG006816

KEGG: -
GO: GO:0003674 GO:0003712 GO:0003714 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0008150 GO:0009611 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0010556 GO:0010558 GO:0010605 GO:0010646 GO:0019219 GO:0019222 GO:0023051 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045934 GO:0048519 GO:0048523 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0140110 GO:1902679 GO:1903506 GO:1903507 GO:2000022 GO:2001141
PFAM: PF06200.17

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006816	XP_003593904.2	92.537	134	5	3	1	130	1	133	6.38e-78	236

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006816	sp\|Q8LBM2\|TIF5A_ARATH	44.275	131	67	4	1	130	3	128	7.83e-26	97.4

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006816	tr\|G7IP70\|G7IP70_MEDTR	92.537	134	5	3	1	130	1	133	3.05e-78	236

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
MsaG006816	TF	Tify

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006816	MtrunA17_Chr2g0285821	92.537	134	5	3	1	130	1	133	5.87e-82	236
MsaG006816	MtrunA17_Chr8g0393051	72.180	133	16	6	1	129	1	116	5.52e-55	167
MsaG006816	MtrunA17_Chr8g0376421	54.962	131	47	4	2	130	4	124	1.15e-30	106

Showing 1 to 3 of 3 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsaG006816	AT1G30135.1	44.275	131	67	4	1	130	3	128	7.96e-27	97.4
MsaG006816	AT2G34600.1	41.481	135	67	7	1	131	20	146	2.64e-17	73.6

Showing 1 to 2 of 2 entries

Previous1Next

Find 26 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGCTGGCAAATAGAATGA+AGG	0.571363	2:-10198498	MsaT006816.1:CDS
AATTGTTGTATGGAGGAAAA+AGG	0.349461	2:+10200910	None:intergenic
CAATTATATAGCCCTGGACC+AGG	0.570726	2:-10198407	MsaT006816.1:CDS
CATCTTGCCATCGTAGAAAA+TGG	0.392349	2:+10200685	None:intergenic
CCAGGGCTATATAATTGATG+AGG	0.642818	2:+10198413	None:intergenic
CCATCGTAGAAAATGGTCAG+TGG	0.671131	2:+10200692	None:intergenic
CCATGAAAAGATCTTTGCAA+AGG	0.529406	2:-10198379	MsaT006816.1:CDS
CCTCATCAATTATATAGCCC+TGG	0.530434	2:-10198413	MsaT006816.1:CDS
GAAATACAGAAAAGATGAGG+AGG	0.572260	2:-10200953	None:intergenic
GATGAGGAGGAATTGCAACT+TGG	0.553645	2:-10200940	MsaT006816.1:CDS

Showing 1 to 10 of 26 entries

Previous1 2 3Next

CRISPR-GE

Show entries

Search:

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	10198325	10200961	10198325	ID=MsaG006816
Chr2	mRNA	10198325	10200961	10198325	ID=MsaT006816.1;Parent=MsaG006816
Chr2	exon	10198325	10198534	10198325	ID=MsaT006816.1.exon3;Parent=MsaT006816.1
Chr2	CDS	10198325	10198534	10198325	ID=cds.MsaT006816.1;Parent=MsaT006816.1
Chr2	exon	10200658	10200766	10200658	ID=MsaT006816.1.exon2;Parent=MsaT006816.1
Chr2	CDS	10200658	10200766	10200658	ID=cds.MsaT006816.1;Parent=MsaT006816.1
Chr2	exon	10200885	10200961	10200885	ID=MsaT006816.1.exon1;Parent=MsaT006816.1
Chr2	CDS	10200885	10200961	10200885	ID=cds.MsaT006816.1;Parent=MsaT006816.1

Gene Sequence

>MsaT006816.1

ATGAGGAGGAATTGCAACTTGGAACTATGCCTTTTTCCTCCATACAACAATTCTAGCAATCACCAAAATCACCCCATGGTAGAAGAAGAGGATAGTAATGAGAGCACTCCAATGCAAAATCAGCAACAGCCACTGACCATTTTCTACGATGGCAAGATGTGTGTTACTGATGTCACAGAGCTTCAGGCCAAATCCATCTTAATGCTGGCAAATAGAATGAAGGTGCTAGAAAAAGTGACGACACCAATAGGGTCAGAACCATCAACACCAACAATAGTGCAATCTCCTCATCAATTATATAGCCCTGGACCAGGTCTTTCCATGAAAAGATCTTTGCAAAGGTTTCTACAAAAGAGAAAGAATAGGGTCCAAGAAGCATCTCCATATCATCGTTAG

Protein sequence

>MsaT006816.1

MRRNCNLELCLFPPYNNSSNHQNHPMVEEEDSNESTPMQNQQQPLTIFYDGKMCVTDVTELQAKSILMLANRMKVLEKVTTPIGSEPSTPTIVQSPHQLYSPGPGLSMKRSLQRFLQKRKNRVQEASPYHR*