AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa ssp. caerulea / MsaG006844

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006844 MtrunA17_Chr2g0286151 98.340 482 4 1 1 478 1 482 0.0 942
MsaG006844 MtrunA17_Chr4g0066941 66.805 482 120 6 11 460 18 491 0.0 543
MsaG006844 MtrunA17_Chr1g0195891 49.862 363 148 10 1 349 1 343 9.24e-98 298
MsaG006844 MtrunA17_Chr7g0249221 42.079 404 195 11 26 413 8 388 1.22e-92 287
MsaG006844 MtrunA17_Chr7g0249221 29.193 161 57 3 12 115 190 350 3.52e-12 68.2
MsaG006844 MtrunA17_Chr5g0438891 36.148 379 201 14 40 414 36 377 2.77e-60 203
MsaG006844 MtrunA17_Chr5g0438891 44.578 83 45 1 38 120 76 157 2.67e-18 87.0
MsaG006844 MtrunA17_Chr5g0438891 40.964 83 47 1 33 115 255 335 3.31e-13 71.2
MsaG006844 MtrunA17_Chr3g0116431 33.978 362 167 9 35 375 166 476 8.91e-55 191
MsaG006844 MtrunA17_Chr4g0058011 33.154 371 186 12 36 386 227 555 1.67e-52 186
MsaG006844 MtrunA17_Chr8g0356241 29.268 369 195 14 40 374 138 474 8.22e-30 122
MsaG006844 MtrunA17_Chr8g0356241 35.429 175 70 4 38 181 188 350 6.52e-28 116
MsaG006844 MtrunA17_Chr8g0356241 32.018 228 98 4 3 173 258 485 2.92e-27 114
MsaG006844 MtrunA17_Chr8g0356241 29.674 337 141 16 86 375 138 425 2.80e-16 81.3
MsaG006844 MtrunA17_Chr1g0195901 58.667 75 28 2 380 454 3 74 1.73e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsaG006844 AT5G18550.1 51.064 470 200 13 11 469 15 465 4.95e-137 403
MsaG006844 AT5G18550.4 53.034 445 179 13 11 444 15 440 1.48e-136 401
MsaG006844 AT3G06410.1 56.140 399 155 8 8 395 12 401 1.68e-132 391
MsaG006844 AT5G18550.3 51.708 439 186 12 38 469 14 433 3.62e-131 387
MsaG006844 AT2G47850.1 50.805 435 196 10 15 449 18 434 3.03e-130 385
MsaG006844 AT2G47850.3 50.805 435 196 10 15 449 18 434 3.03e-130 385
MsaG006844 AT5G18550.2 49.362 470 195 13 11 469 15 452 2.24e-129 383
MsaG006844 AT2G47850.2 46.437 435 189 11 15 449 18 408 3.34e-107 326
MsaG006844 AT3G02830.1 41.406 384 167 10 26 390 18 362 1.92e-86 271
MsaG006844 AT3G02830.2 41.732 381 164 10 29 390 1 342 4.03e-86 269
MsaG006844 AT5G16540.1 41.081 370 148 11 26 386 19 327 3.54e-81 256
MsaG006844 AT5G16540.1 38.144 97 60 0 22 118 222 318 3.25e-15 77.8
MsaG006844 AT5G16540.3 41.417 367 145 11 29 386 1 306 4.65e-81 255
MsaG006844 AT5G16540.3 38.144 97 60 0 22 118 201 297 2.98e-15 77.4
MsaG006844 AT2G47850.4 46.988 332 149 8 124 449 2 312 1.08e-75 241
MsaG006844 AT2G47850.4 41.304 92 54 0 37 128 161 252 1.62e-16 81.3
MsaG006844 AT5G16540.2 39.459 370 147 12 26 386 19 320 5.49e-74 238
MsaG006844 AT5G16540.2 41.237 97 49 1 86 182 240 328 5.59e-15 76.6
MsaG006844 AT5G16540.2 35.294 102 49 2 22 118 222 311 9.36e-14 73.2
MsaG006844 AT5G16540.4 40.303 330 127 11 29 349 1 269 7.49e-65 211
MsaG006844 AT5G63260.1 34.715 386 188 13 20 390 85 421 3.24e-58 198
MsaG006844 AT5G63260.2 33.250 400 191 13 20 390 85 437 2.98e-55 191
MsaG006844 AT3G48440.1 34.807 362 199 11 37 391 104 435 3.50e-54 188
MsaG006844 AT1G04990.1 32.964 361 180 9 21 377 34 336 1.31e-52 182
MsaG006844 AT1G04990.6 32.964 361 180 9 21 377 34 336 1.31e-52 182
MsaG006844 AT1G04990.2 32.964 361 180 9 21 377 34 336 1.31e-52 182
MsaG006844 AT1G04990.5 31.579 361 165 10 21 377 34 316 5.51e-47 167
MsaG006844 AT2G32930.2 31.316 380 206 10 40 411 41 373 2.05e-45 165
MsaG006844 AT2G32930.2 43.038 79 44 1 37 115 82 159 2.39e-15 78.6
MsaG006844 AT2G32930.3 31.316 380 206 10 40 411 14 346 2.67e-45 164
MsaG006844 AT2G32930.3 43.038 79 44 1 37 115 55 132 2.19e-15 78.6
MsaG006844 AT3G12680.1 32.410 361 186 13 40 374 171 499 2.41e-41 155
MsaG006844 AT3G12680.1 42.000 150 59 3 38 162 220 366 4.74e-32 129
MsaG006844 AT3G12680.1 40.476 168 58 5 41 167 338 504 2.71e-29 120
MsaG006844 AT3G12680.1 32.353 204 79 5 37 181 262 465 2.22e-24 106
MsaG006844 AT3G12680.1 41.000 100 45 2 39 124 416 515 2.50e-18 88.2
MsaG006844 AT2G32930.1 31.053 380 203 11 40 411 41 369 4.62e-41 153
MsaG006844 AT1G04990.3 30.420 286 149 7 96 377 16 255 4.17e-31 122
MsaG006844 AT1G04990.3 39.437 71 42 1 46 116 12 81 9.43e-14 72.8
MsaG006844 AT1G04990.3 43.421 76 42 1 88 163 179 253 7.42e-13 70.1
MsaG006844 AT1G04990.4 28.671 286 134 8 96 377 16 235 8.18e-26 107
MsaG006844 AT1G04990.4 42.424 66 37 1 51 116 17 81 1.34e-13 72.0
MsaG006844 AT1G48195.1 46.753 77 40 1 85 161 5 80 3.50e-17 76.6
MsaG006844 AT1G48195.1 42.308 78 45 0 296 373 3 80 3.01e-16 73.9
MsaG006844 AT1G48195.1 35.897 78 50 0 37 114 3 80 2.42e-11 60.1

Find 166 sgRNAs with CRISPR-Local

Find sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGGCTCCACACAGCTTTA+TGG 0.148543 2:+10688966 MsaT006844.1:CDS
ACTGGACCTTATCAACTTTC+TGG 0.159692 2:+10689023 MsaT006844.1:CDS
GGACCTTCTTCACAACAAAT+TGG 0.188676 2:+10688696 MsaT006844.1:CDS
AGGACAAGATCTTGCAAATT+TGG 0.216539 2:+10688270 MsaT006844.1:CDS
TTCTGGCTGGGGTCCTTATC+AGG 0.252628 2:+10688809 MsaT006844.1:CDS
CTAAGGACGGCATTCACTTT+TGG 0.274159 2:-10689194 None:intergenic
CGAGTGCTTGATTGAGAAAC+AGG 0.284724 2:-10692459 None:intergenic
CCATAATAATTTAGTGAAAC+AGG 0.285617 2:-10688345 None:intergenic
ACAAGCCCTGTACTTCCTTC+TGG 0.315539 2:+10688930 MsaT006844.1:CDS
TTGGCTCCACACAGCTTTAT+GGG 0.316108 2:+10688967 MsaT006844.1:CDS
TAAGGACCCCAGCCAGAAAA+AGG 0.327349 2:-10688804 None:intergenic
TCGTTCTGATTTCTGCTTGA+AGG 0.328571 2:-10689059 None:intergenic
CCTGTTTCACTAAATTATTA+TGG 0.341570 2:+10688345 MsaT006844.1:CDS
TAATGATACTCTGGTTGATT+AGG 0.346544 2:-10689101 None:intergenic
AGGTTATTGGAGCTGCTTCT+AGG 0.346914 2:+10687913 MsaT006844.1:intron
GACCTTCTTCACAACAAATT+GGG 0.350087 2:+10688697 MsaT006844.1:CDS
TGCAGAACCTATGTGGCAAT+TGG 0.353523 2:+10687675 MsaT006844.1:intron
TCTGGTTGATTAGGACTTGC+TGG 0.357396 2:-10689092 None:intergenic
GAGCTGCTTCTAGGACTGTT+GGG 0.358371 2:+10687922 MsaT006844.1:CDS
GATTCTCAAACCGGTTTAGA+AGG 0.358762 2:+10687586 MsaT006844.1:CDS
CAGCGTGGTATATGCAAGTT+TGG 0.367194 2:+10692186 MsaT006844.1:CDS
CCAGTTGCACCCTACTTTGT+GGG 0.372096 2:+10692282 MsaT006844.1:CDS
GCAGAACCTATGTGGCAATT+GGG 0.384400 2:+10687676 MsaT006844.1:intron
CATTACCCGGTGAAGGTAGC+TGG 0.387837 2:-10688995 None:intergenic
ATTGCTACTTGTCGTGGTAT+TGG 0.389271 2:-10692505 None:intergenic
TGCACTTACTATTTGAGAAC+TGG 0.397141 2:+10687745 MsaT006844.1:CDS
TCTAAACCGGTTTGAGAATC+CGG 0.399891 2:-10687583 None:intergenic
ACCAGTTGCACCCTACTTTG+TGG 0.400576 2:+10692281 MsaT006844.1:CDS
AATGCCGTCCTTAGCCCTGC+AGG 0.402972 2:+10689203 MsaT006844.1:CDS
CATTCACATTTCTTAATTTG+AGG 0.403952 2:-10692538 None:intergenic
CTGTAACTCTGTGGTGCAAT+AGG 0.404024 2:-10692231 None:intergenic
AGCTCCATCGCCGGTTCCCC+CGG 0.406379 2:+10688614 MsaT006844.1:CDS
GTAAGTTCTGGCTGCAACTC+TGG 0.408260 2:-10692342 None:intergenic
CCCACAAAGTAGGGTGCAAC+TGG 0.416510 2:-10692282 None:intergenic
TCACCGGGTAATGCCTATAC+TGG 0.417112 2:+10689005 MsaT006844.1:CDS
AACTTACTGCAGGATCCAAC+AGG 0.417918 2:+10692358 MsaT006844.1:CDS
AAAAGGAAGCTCCTCTGGTT+TGG 0.424409 2:-10689129 None:intergenic
TACTTTGTGGGTTCTTCCGT+TGG 0.425428 2:+10692294 MsaT006844.1:CDS
CCATAGGTCCATAGGGGCTC+TGG 0.431128 2:-10688761 None:intergenic
ACCCCAATTTGTTGTGAAGA+AGG 0.431547 2:-10688699 None:intergenic
GTGCAACTGGTACATCTGTC+AGG 0.431818 2:-10692269 None:intergenic
GTTGGCTTGACTTTGCCAAC+TGG 0.431997 2:+10692432 MsaT006844.1:CDS
TGTTTGTTTACCTTCTAAAC+CGG 0.432767 2:-10687596 None:intergenic
TTGGATCCTGCAGTAAGTTC+TGG 0.432849 2:-10692354 None:intergenic
GGAGCTGCTTCTAGGACTGT+TGG 0.436466 2:+10687921 MsaT006844.1:CDS
AAAACGGGGCAATGCAAGTT+TGG 0.437807 2:+10688543 MsaT006844.1:CDS
GGTACATGTAAAGGTGAAAC+CGG 0.437936 2:-10688633 None:intergenic
GGAGCAAAAGGAAGCTCCTC+TGG 0.446002 2:-10689134 None:intergenic
CCTATGTGGCAATTGGGGTT+AGG 0.448878 2:+10687682 MsaT006844.1:CDS
TCATCAGTAAGCACATCAAC+TGG 0.458973 2:+10692405 MsaT006844.1:CDS
CAACTTTCTGGTTCCTCAGT+CGG 0.464302 2:+10689035 MsaT006844.1:CDS
GGACGTAACGGAAGCCCTGC+AGG 0.467084 2:-10689218 None:intergenic
TTCACAACAAATTGGGGTAC+TGG 0.467303 2:+10688704 MsaT006844.1:CDS
GTGGCTTTGGTTCTAGGTGT+CGG 0.469793 2:+10687773 MsaT006844.1:CDS
ATTTGTACACTAGCAGGAAC+TGG 0.472818 2:-10688588 None:intergenic
GGAGAACCAGAAGGAAGTAC+AGG 0.473748 2:-10688936 None:intergenic
TCAGTGGCTCCTGTCTGTTT+CGG 0.476235 2:-10688315 None:intergenic
TACCTATAAGATGGAGCAAA+AGG 0.476484 2:-10689146 None:intergenic
TAAGTGCAATCAACCTCATC+AGG 0.476914 2:-10687730 None:intergenic
TTATAATTAACAGGGTGAAA+AGG 0.477063 2:+10688503 MsaT006844.1:intron
GTGGTATTGGCAGGTGCTAA+AGG 0.477705 2:-10692492 None:intergenic
GATCCGTCTTCTCAATGGAC+CGG 0.479108 2:+10687559 MsaT006844.1:CDS
ACTGATGACGATATTCTAGA+AGG 0.479935 2:-10692390 None:intergenic
TCGTTTGTCCAGAGCCCCTA+TGG 0.481665 2:+10688753 MsaT006844.1:CDS
GTCTGTACGGTTGGATACAA+TGG 0.485124 2:-10688666 None:intergenic
TCTGGTTCTCCAGCTAATGT+TGG 0.486127 2:+10688948 MsaT006844.1:CDS
TCTGTACGGTTGGATACAAT+GGG 0.486783 2:-10688665 None:intergenic
ACCGGGCCGGATTCTCAAAC+CGG 0.487708 2:+10687577 MsaT006844.1:CDS
CCAGAGCCCCTATGGACCTA+TGG 0.489000 2:+10688761 MsaT006844.1:CDS
CCTAACCCCAATTGCCACAT+AGG 0.489648 2:-10687682 None:intergenic
ACAGGCTGTCCAACACGTTC+AGG 0.492536 2:-10687951 None:intergenic
TGTGTGGAGCCAACATTAGC+TGG 0.495140 2:-10688957 None:intergenic
AACCTGATCCGTCTTCTCAA+TGG 0.496083 2:+10687554 MsaT006844.1:CDS
ACGGAAGCCCTGCAGGGCTA+AGG 0.497525 2:-10689211 None:intergenic
CCAACCGTACAGACTCCATC+TGG 0.498384 2:+10688675 MsaT006844.1:CDS
GGACAATACCATAGGTCCAT+AGG 0.499115 2:-10688769 None:intergenic
GGATACAATGGGGAAGGTAC+TGG 0.505178 2:-10688654 None:intergenic
ATTCACATTTCTTAATTTGA+GGG 0.507428 2:-10692537 None:intergenic
CTACTTGTCGTGGTATTGGC+AGG 0.509824 2:-10692501 None:intergenic
TGCAGGGCTTCCGTTACGTC+CGG 0.510700 2:+10689220 MsaT006844.1:CDS
GTCCATTGAGAAGACGGATC+AGG 0.511766 2:-10687556 None:intergenic
TTGGCTTGACCTACCTGATA+AGG 0.513240 2:-10688822 None:intergenic
TTGAAATGCAGTATTATATG+AGG 0.513604 2:+10688250 MsaT006844.1:intron
GACAATACCATAGGTCCATA+GGG 0.514835 2:-10688768 None:intergenic
GATAACCCAGCTACCTTCAC+CGG 0.517819 2:+10688989 MsaT006844.1:CDS
GGCTTGACTTTGCCAACTGG+TGG 0.521772 2:+10692435 MsaT006844.1:CDS
TGTTGGACAGCCTGTGTGCC+AGG 0.522566 2:+10687959 MsaT006844.1:CDS
GAAGGTACTGGTACATGTAA+AGG 0.528560 2:-10688642 None:intergenic
CCAGATGGAGTCTGTACGGT+TGG 0.533223 2:-10688675 None:intergenic
AGCACATCAACTGGATCAGT+TGG 0.533767 2:+10692414 MsaT006844.1:CDS
GAGGAACCAGAAAGTTGATA+AGG 0.535581 2:-10689029 None:intergenic
ATCCGTCTTCTCAATGGACC+GGG 0.542887 2:+10687560 MsaT006844.1:CDS
ACGGAAGAACCCACAAAGTA+GGG 0.543294 2:-10692291 None:intergenic
GCTGGAATTTGTACACTAGC+AGG 0.543649 2:-10688594 None:intergenic
TTCACATTTCTTAATTTGAG+GGG 0.545538 2:-10692536 None:intergenic
TATCATCATCCGAAACAGAC+AGG 0.545794 2:+10688306 MsaT006844.1:CDS
GGATGATCAAATTTGCATGC+AGG 0.545853 2:-10692210 None:intergenic
GAAATCATTACCGGACGTAA+CGG 0.546095 2:-10689230 None:intergenic
TATATACATACCGGACGTAA+CGG 0.546577 2:-10688372 None:intergenic
TGGTACATCTGTCAGGGAAG+AGG 0.547265 2:-10692262 None:intergenic
AGCTGCTTCTAGGACTGTTG+GGG 0.557759 2:+10687923 MsaT006844.1:CDS
TTGGAGTAATAATGATACTC+TGG 0.560717 2:-10689110 None:intergenic
CATAATAATTTAGTGAAACA+GGG 0.562802 2:-10688344 None:intergenic
CAGAACCTATGTGGCAATTG+GGG 0.564961 2:+10687677 MsaT006844.1:intron
GGCCCGGTCCATTGAGAAGA+CGG 0.574708 2:-10687562 None:intergenic
TTATGGATATCCGTTACGTC+CGG 0.574710 2:+10688362 MsaT006844.1:CDS
TGTAAAATGCAGAACCTATG+TGG 0.575003 2:+10687668 MsaT006844.1:intron
AAGTTGATAAGGTCCAGTAT+AGG 0.575231 2:-10689018 None:intergenic
AACGGAAGAACCCACAAAGT+AGG 0.576967 2:-10692292 None:intergenic
CTCATCAGGTCGTTGTGGAT+AGG 0.577829 2:-10687716 None:intergenic
GTTGAGTGGAGCGAGGAAAG+TGG 0.577852 2:-10687534 None:intergenic
ATGCCGTCCTTAGCCCTGCA+GGG 0.582917 2:+10689204 MsaT006844.1:CDS
GTATAGGCATTACCCGGTGA+AGG 0.585426 2:-10689002 None:intergenic
TGAAACAGGGCTAGCATCAG+TGG 0.587083 2:-10688331 None:intergenic
TTTGGTGCACTCATGTCTGG+TGG 0.589030 2:-10689176 None:intergenic
AGAAGGAACAGACTCCCTGT+TGG 0.589389 2:-10692373 None:intergenic
AACTCTGGTGAAGAAGATGA+AGG 0.589670 2:-10692327 None:intergenic
AGGTCCAGATGGAGTCTGTA+CGG 0.593840 2:-10688679 None:intergenic
TGAGAAACAGGGCCACCAGT+TGG 0.594435 2:-10692447 None:intergenic
AAGCCCTGCAGGGCTAAGGA+CGG 0.594591 2:-10689207 None:intergenic
GTCTTCTCAATGGACCGGGC+CGG 0.595616 2:+10687564 MsaT006844.1:CDS
TTGCAGCCAGAACTTACTGC+AGG 0.595785 2:+10692348 MsaT006844.1:CDS
ACCTTCTTCACAACAAATTG+GGG 0.596480 2:+10688698 MsaT006844.1:CDS
ATGTGGCAATTGGGGTTAGG+TGG 0.598261 2:+10687685 MsaT006844.1:CDS
TCTGTCAGGGAAGAGGCAGA+TGG 0.599348 2:-10692255 None:intergenic
ATTACCCGGTGAAGGTAGCT+GGG 0.599486 2:-10688994 None:intergenic
AAGAGTTGATTACCGCGGCA+CGG 0.603398 2:-10687813 None:intergenic
AGAAACATTGCTACTTGTCG+TGG 0.603866 2:-10692511 None:intergenic
CTATCCACAACGACCTGATG+AGG 0.604241 2:+10687717 MsaT006844.1:CDS
TCAACCTCATCAGGTCGTTG+TGG 0.604355 2:-10687721 None:intergenic
ACAAATTCCAGCTCCATCGC+CGG 0.606383 2:+10688605 MsaT006844.1:CDS
TCTGCTTGAAGGACCGACTG+AGG 0.609373 2:-10689048 None:intergenic
TGTTGTGAAGAAGGTCCAGA+TGG 0.611457 2:-10688690 None:intergenic
AGAAGACGGATCAGGTTGAG+TGG 0.611535 2:-10687548 None:intergenic
GTACATGTAAAGGTGAAACC+GGG 0.613076 2:-10688632 None:intergenic
AAATTGGGGTACTGGTCGCA+AGG 0.614330 2:+10688712 MsaT006844.1:CDS
TGCAACTGGTACATCTGTCA+GGG 0.614727 2:-10692268 None:intergenic
TATGGTATTGTCCCCAACCA+TGG 0.619686 2:+10688779 MsaT006844.1:CDS
GCAAGGCCACCTCTACTACA+TGG 0.623985 2:+10688729 MsaT006844.1:CDS
GGTTTGTGATACCTATAAGA+TGG 0.626246 2:-10689155 None:intergenic
GACGTAACGGAAGCCCTGCA+GGG 0.628849 2:-10689217 None:intergenic
ATGGTTGGGGACAATACCAT+AGG 0.634397 2:-10688777 None:intergenic
ACCGGTTTGAGAATCCGGCC+CGG 0.634443 2:-10687578 None:intergenic
TCATCCTCGTGACCGTGCCG+CGG 0.635356 2:+10687801 MsaT006844.1:CDS
TGAAGGAACAAGAGTACCAA+CGG 0.641917 2:-10692310 None:intergenic
AACGAACCATGTAGTAGAGG+TGG 0.645568 2:-10688735 None:intergenic
ACATTAGCTGGAGAACCAGA+AGG 0.656658 2:-10688945 None:intergenic
ATAGAAAGAACCTGGCACAC+AGG 0.659872 2:-10687969 None:intergenic
ATAACCCAGCTACCTTCACC+GGG 0.661218 2:+10688990 MsaT006844.1:CDS
ATTACCGCGGCACGGTCACG+AGG 0.663314 2:-10687805 None:intergenic
GGTCCAGTATAGGCATTACC+CGG 0.665325 2:-10689008 None:intergenic
GGATCAGGTTGAGTGGAGCG+AGG 0.669957 2:-10687541 None:intergenic
ACAAACGAACCATGTAGTAG+AGG 0.670307 2:-10688738 None:intergenic
ACGGTTGGATACAATGGGGA+AGG 0.671841 2:-10688660 None:intergenic
GAGAACCAGAAGGAAGTACA+GGG 0.676606 2:-10688935 None:intergenic
GAGTGCTTGATTGAGAAACA+GGG 0.682043 2:-10692458 None:intergenic
GGGGAGTATCCTGAACGTGT+TGG 0.686141 2:+10687942 MsaT006844.1:CDS
ACTTACTGCAGGATCCAACA+GGG 0.697938 2:+10692359 MsaT006844.1:CDS
GGTTATCCCATAAAGCTGTG+TGG 0.703062 2:-10688973 None:intergenic
TGCACTCACTACGCACAGCG+TGG 0.705043 2:+10692171 MsaT006844.1:CDS
TACATGTAAAGGTGAAACCG+GGG 0.706635 2:-10688631 None:intergenic
TCATTATTACTCCAAACCAG+AGG 0.716269 2:+10689118 MsaT006844.1:CDS
ACAATACCATAGGTCCATAG+GGG 0.724835 2:-10688767 None:intergenic
ACATGTAAAGGTGAAACCGG+GGG 0.747756 2:-10688630 None:intergenic
GCAGATGGACTGTAACTCTG+TGG 0.749573 2:-10692240 None:intergenic
CTGTACGGTTGGATACAATG+GGG 0.782914 2:-10688664 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
Chromosome Type Strat End Strand Name
Chr2 gene 10687529 10692548 10687529 ID=MsaG006844
Chr2 mRNA 10687529 10692548 10687529 ID=MsaT006844.1;Parent=MsaG006844
Chr2 exon 10687529 10687607 10687529 ID=MsaT006844.1.exon1;Parent=MsaT006844.1
Chr2 CDS 10687529 10687607 10687529 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10687680 10687822 10687680 ID=MsaT006844.1.exon2;Parent=MsaT006844.1
Chr2 CDS 10687680 10687822 10687680 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10687915 10687980 10687915 ID=MsaT006844.1.exon3;Parent=MsaT006844.1
Chr2 CDS 10687915 10687980 10687915 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10688261 10688383 10688261 ID=MsaT006844.1.exon4;Parent=MsaT006844.1
Chr2 CDS 10688261 10688383 10688261 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10688516 10688830 10688516 ID=MsaT006844.1.exon5;Parent=MsaT006844.1
Chr2 CDS 10688516 10688830 10688516 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10688921 10689241 10688921 ID=MsaT006844.1.exon6;Parent=MsaT006844.1
Chr2 CDS 10688921 10689241 10688921 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Chr2 exon 10692159 10692548 10692159 ID=MsaT006844.1.exon7;Parent=MsaT006844.1
Chr2 CDS 10692159 10692548 10692159 ID=cds.MsaT006844.1;Parent=MsaT006844.1
Gene Sequence

>MsaT006844.1

ATGGACCACTTTCCTCGCTCCACTCAACCTGATCCGTCTTCTCAATGGACCGGGCCGGATTCTCAAACCGGTTTAGAAGAACCTATGTGGCAATTGGGGTTAGGTGGTGAAGATTCCTATCCACAACGACCTGATGAGGTTGATTGCACTTACTATTTGAGAACTGGTTTTTGTGGCTTTGGTTCTAGGTGTCGGTTCAATCATCCTCGTGACCGTGCCGCGGTTATTGGAGCTGCTTCTAGGACTGTTGGGGAGTATCCTGAACGTGTTGGACAGCCTGTGTGCCAGTATTATATGAGGACAAGATCTTGCAAATTTGGTGCATCTTGTAAGTATCATCATCCGAAACAGACAGGAGCCACTGATGCTAGCCCTGTTTCACTAAATTATTATGGATATCCGTTACGTCCGGGTGAAAAGGAATGTTCATATTTTGTGAAAACGGGGCAATGCAAGTTTGGTGCAACTTGTAAATTTGATCATCCAGTTCCTGCTAGTGTACAAATTCCAGCTCCATCGCCGGTTCCCCCGGTTTCACCTTTACATGTACCAGTACCTTCCCCATTGTATCCAACCGTACAGACTCCATCTGGACCTTCTTCACAACAAATTGGGGTACTGGTCGCAAGGCCACCTCTACTACATGGTTCGTTTGTCCAGAGCCCCTATGGACCTATGGTATTGTCCCCAACCATGGTTCCTTTTTCTGGCTGGGGTCCTTATCAGGCTACTGCAACAAGCCCTGTACTTCCTTCTGGTTCTCCAGCTAATGTTGGCTCCACACAGCTTTATGGGATAACCCAGCTACCTTCACCGGGTAATGCCTATACTGGACCTTATCAACTTTCTGGTTCCTCAGTCGGTCCTTCAAGCAGAAATCAGAACGAGCAATCATTTCCAGCAAGTCCTAATCAACCAGAGTATCATTATTACTCCAAACCAGAGGAGCTTCCTTTTGCTCCATCTTATAGGTATCACAAACCACCAGACATGAGTGCACCAAAAGTGAATGCCGTCCTTAGCCCTGCAGGGCTTCCGTTACGTCCGGGAGCAGCACTCTGCACTCACTACGCACAGCGTGGTATATGCAAGTTTGGTCCTGCATGCAAATTTGATCATCCTATTGCACCACAGAGTTACAGTCCATCTGCCTCTTCCCTGACAGATGTACCAGTTGCACCCTACTTTGTGGGTTCTTCCGTTGGTACTCTTGTTCCTTCATCTTCTTCACCAGAGTTGCAGCCAGAACTTACTGCAGGATCCAACAGGGAGTCTGTTCCTTCTAGAATATCGTCATCAGTAAGCACATCAACTGGATCAGTTGGCTTGACTTTGCCAACTGGTGGCCCTGTTTCTCAATCAAGCACTCGAAGTTCTAGTCCTTTAGCACCTGCCAATACCACGACAAGTAGCAATGTTTCTCACCCCTCAAATTAA
Protein sequence

>MsaT006844.1

MDHFPRSTQPDPSSQWTGPDSQTGLEEPMWQLGLGGEDSYPQRPDEVDCTYYLRTGFCGFGSRCRFNHPRDRAAVIGAASRTVGEYPERVGQPVCQYYMRTRSCKFGASCKYHHPKQTGATDASPVSLNYYGYPLRPGEKECSYFVKTGQCKFGATCKFDHPVPASVQIPAPSPVPPVSPLHVPVPSPLYPTVQTPSGPSSQQIGVLVARPPLLHGSFVQSPYGPMVLSPTMVPFSGWGPYQATATSPVLPSGSPANVGSTQLYGITQLPSPGNAYTGPYQLSGSSVGPSSRNQNEQSFPASPNQPEYHYYSKPEELPFAPSYRYHKPPDMSAPKVNAVLSPAGLPLRPGAALCTHYAQRGICKFGPACKFDHPIAPQSYSPSASSLTDVPVAPYFVGSSVGTLVPSSSSPELQPELTAGSNRESVPSRISSSVSTSTGSVGLTLPTGGPVSQSSTRSSSPLAPANTTTSSNVSHPSN*